Wall clock time and date at job start Mon Mar 30 2020 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46907 * 110.99837 * 2 1 4 4 C 1.46894 * 111.00310 * 123.95631 * 2 1 3 5 5 C 1.53003 * 109.47372 * 170.00068 * 4 2 1 6 6 C 1.50699 * 109.47110 * 180.02562 * 5 4 2 7 7 C 1.34183 * 126.54444 * 265.02286 * 6 5 4 8 8 N 1.36878 * 109.99350 * 179.97438 * 7 6 5 9 9 H 0.96998 * 124.99516 * 179.97438 * 8 7 6 10 10 C 1.37367 * 110.01990 * 0.22769 * 8 7 6 11 11 C 1.39699 * 133.11729 * 179.74753 * 10 8 7 12 12 C 1.36001 * 120.38526 * 180.02562 * 11 10 8 13 13 C 1.41145 * 120.57328 * 0.02562 * 12 11 10 14 14 C 1.41318 * 120.07837 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00535 * 24.53427 * 14 13 12 16 16 C 1.39881 * 119.99548 * 204.53583 * 14 13 12 17 17 N 1.30882 * 120.00129 * 17.80926 * 16 14 13 18 18 Si 1.86798 * 119.99600 * 197.80628 * 16 14 13 19 19 H 1.48508 * 109.46802 * 90.00221 * 18 16 14 20 20 H 1.48499 * 109.46785 * 209.99870 * 18 16 14 21 21 H 1.48500 * 109.47450 * 330.00193 * 18 16 14 22 22 C 1.40383 * 119.83519 * 359.61102 * 13 12 11 23 23 C 1.39026 * 119.30230 * 0.61897 * 22 13 12 24 24 H 1.09001 * 109.46846 * 296.04142 * 1 2 3 25 25 H 1.08994 * 109.46902 * 56.04050 * 1 2 3 26 26 H 1.08999 * 109.46446 * 176.04583 * 1 2 3 27 27 H 1.08996 * 109.47158 * 183.95403 * 3 2 1 28 28 H 1.08994 * 109.47255 * 303.96026 * 3 2 1 29 29 H 1.09002 * 109.46348 * 63.95652 * 3 2 1 30 30 H 1.09003 * 109.47347 * 49.99695 * 4 2 1 31 31 H 1.08996 * 109.47386 * 290.00209 * 4 2 1 32 32 H 1.08993 * 109.47019 * 60.00309 * 5 4 2 33 33 H 1.09000 * 109.46878 * 299.99879 * 5 4 2 34 34 H 1.07996 * 125.00417 * 359.97438 * 7 6 5 35 35 H 1.08006 * 119.80633 * 0.02562 * 11 10 8 36 36 H 1.08004 * 119.71136 * 179.97438 * 12 11 10 37 37 H 0.97003 * 120.00308 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.34604 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5046 -0.9553 0.9702 6 6 4.0445 -1.7417 2.1369 7 6 4.5909 -1.2393 3.2547 8 7 4.9664 -2.2564 4.0901 9 1 5.3844 -2.1384 4.9574 10 6 4.6697 -3.4692 3.5174 11 6 4.8455 -4.7908 3.9346 12 6 4.4471 -5.8213 3.1417 13 6 3.8512 -5.5726 1.8865 14 6 3.4416 -6.6514 1.0707 15 1 3.2070 -7.6068 1.5163 16 6 3.3400 -6.4817 -0.3140 17 7 3.9390 -5.4737 -0.8955 18 14 2.3496 -7.6940 -1.3333 19 1 0.9415 -7.2306 -1.4232 20 1 2.9294 -7.7833 -2.6975 21 1 2.3904 -9.0315 -0.6894 22 6 3.6595 -4.2509 1.4540 23 6 4.0735 -3.2021 2.2673 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3632 -1.0252 -0.0709 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8523 29 1 1.7044 1.8723 0.9234 30 1 1.5090 -1.7407 1.1756 31 1 1.7976 -0.2249 2.0627 32 1 3.9910 0.0193 0.9323 33 1 3.7025 -1.4965 0.0450 34 1 4.7160 -0.1873 3.4644 35 1 5.3005 -4.9953 4.8926 36 1 4.5886 -6.8389 3.4749 37 1 3.8682 -5.3558 -1.8557 38 1 3.2048 -4.0511 0.4950 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022001126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:18 Heat of formation + Delta-G solvation = 31.345159 kcal Electronic energy + Delta-G solvation = -18806.060923 eV Core-core repulsion = 16033.514142 eV Total energy + Delta-G solvation = -2772.546781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.59569 -38.51106 -37.69291 -34.98167 -33.86916 -30.97472 -30.60350 -28.63231 -28.40561 -26.68934 -25.15132 -23.18708 -22.05902 -22.00195 -19.91968 -18.85770 -18.31196 -16.98002 -16.53731 -16.27747 -16.23048 -15.60593 -15.37438 -14.83067 -14.66701 -14.43732 -14.14936 -13.52019 -13.35222 -13.24545 -13.02840 -12.92477 -12.77008 -12.68520 -12.49362 -12.34314 -12.29667 -11.83124 -11.73801 -11.48527 -11.08179 -10.80983 -10.00888 -9.23671 -8.84385 -8.47150 -8.19119 -6.10398 0.77990 1.13715 1.39387 1.52299 1.58414 2.11484 2.26885 2.67888 2.85294 3.14221 3.84983 4.06336 4.25913 4.29851 4.33094 4.40408 4.53234 4.56514 4.67130 4.71892 4.78443 4.83015 4.94837 4.99076 5.01800 5.08968 5.22179 5.28156 5.39181 5.43369 5.63883 5.70738 5.89054 6.08364 6.12373 6.20685 6.29534 6.38990 6.49799 6.84739 7.08185 7.16740 7.19766 8.48736 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.007503 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.415913 B = 3731.148379 C = 5385.668919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.570 5.570 3 C 0.023 3.977 4 C 0.076 3.924 5 C -0.019 4.019 6 C -0.223 4.223 7 C 0.065 3.935 8 N -0.589 5.589 9 H 0.421 0.579 10 C -0.009 4.009 11 C -0.115 4.115 12 C -0.187 4.187 13 C 0.051 3.949 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.974 3.026 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.257 1.257 22 C -0.169 4.169 23 C -0.093 4.093 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.203 0.797 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.281 0.719 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 12.286 4.366 13.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.295 5.295 3 C -0.124 4.124 4 C -0.052 4.052 5 C -0.057 4.057 6 C -0.232 4.232 7 C -0.063 4.063 8 N -0.194 5.194 9 H 0.259 0.741 10 C -0.113 4.113 11 C -0.135 4.135 12 C -0.207 4.207 13 C 0.049 3.951 14 C -0.535 4.535 15 H 0.090 0.910 16 C -0.180 4.180 17 N -0.459 5.459 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.195 1.195 21 H -0.181 1.181 22 C -0.190 4.190 23 C -0.097 4.097 24 H 0.050 0.950 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.220 0.780 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.184 12.159 3.837 12.936 hybrid contribution -0.424 -0.573 0.395 0.815 sum -2.608 11.585 4.232 12.607 Atomic orbital electron populations 1.22378 0.86714 1.01927 1.01179 1.61935 1.08683 1.15171 1.43685 1.22471 1.01315 0.87575 1.01081 1.21929 0.95523 0.96685 0.91025 1.19604 0.93688 0.98249 0.94171 1.20328 1.12537 0.91044 0.99308 1.21885 1.00331 0.93939 0.90128 1.41277 1.55908 1.03041 1.19206 0.74064 1.18157 1.09819 0.87466 0.95831 1.19586 1.04562 0.89243 1.00152 1.20829 1.05263 0.97612 0.97010 1.17768 0.91718 0.93194 0.92463 1.19646 1.43341 0.98229 0.92332 0.91037 1.26626 0.94314 0.97767 0.99326 1.69946 1.34020 1.29935 1.12019 0.85328 0.78804 0.78980 0.77302 1.19183 1.19507 1.18085 1.20559 1.07246 0.91175 0.99981 1.19439 1.01789 0.93735 0.94717 0.95035 0.89840 0.92755 0.90938 0.90370 0.94881 0.94065 0.94172 0.89603 0.94283 0.77991 0.85752 0.87428 0.90863 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.57 127.69 1.22 1.86 16 2 N -0.57 -16.50 5.02 -948.85 -4.76 -21.27 16 3 C 0.02 0.50 9.32 127.69 1.19 1.69 16 4 C 0.08 2.52 4.94 86.31 0.43 2.95 16 5 C -0.02 -0.66 5.67 29.85 0.17 -0.49 16 6 C -0.22 -8.81 5.58 -18.59 -0.10 -8.91 16 7 C 0.06 2.00 11.73 82.98 0.97 2.97 16 8 N -0.59 -19.22 6.05 -187.11 -1.13 -20.35 16 9 H 0.42 10.08 8.96 -92.71 -0.83 9.24 16 10 C -0.01 -0.38 7.28 39.32 0.29 -0.09 16 11 C -0.11 -5.07 9.99 22.10 0.22 -4.85 16 12 C -0.19 -9.44 9.69 22.46 0.22 -9.22 16 13 C 0.05 2.93 5.57 -21.29 -0.12 2.81 16 14 C -0.50 -28.97 9.04 23.43 0.21 -28.76 16 15 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 16 C 0.03 1.77 5.13 85.23 0.44 2.21 16 17 N -0.83 -47.34 10.97 21.82 0.24 -47.10 16 18 Si 0.97 41.35 29.59 68.60 2.03 43.38 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 C -0.17 -9.62 8.76 22.98 0.20 -9.42 16 23 C -0.09 -4.60 6.34 -20.20 -0.13 -4.73 16 24 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 26 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 27 H 0.07 1.54 6.47 -2.39 -0.02 1.52 16 28 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.04 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.04 1.20 8.12 -2.39 -0.02 1.18 16 32 H 0.09 2.42 6.55 -2.39 -0.02 2.41 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.20 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 37 H 0.28 14.68 8.30 -92.71 -0.77 13.91 16 38 H 0.09 5.65 6.17 -2.91 -0.02 5.63 16 Total: -1.00 -69.19 315.06 1.81 -67.38 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.22 Total: 29.93 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 5.21 Total: -51.97 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -5.65 Total: -88.73 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -69.19 1.81 -67.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022001126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.730 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds