Wall clock time and date at job start Mon Mar 30 2020 07:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36578 * 120.27557 * 2 1 4 4 C 1.40155 * 119.69182 * 179.97438 * 3 2 1 5 5 C 1.35348 * 120.13144 * 359.97438 * 4 3 2 6 6 N 1.36244 * 120.57340 * 0.02562 * 5 4 3 7 7 C 1.38476 * 132.44570 * 180.30559 * 6 5 4 8 8 C 1.39821 * 126.89537 * 0.02562 * 7 6 5 9 9 H 1.08002 * 120.00025 * 213.98827 * 8 7 6 10 10 C 1.39878 * 119.99894 * 33.99733 * 8 7 6 11 11 N 1.31023 * 120.00213 * 19.42312 * 10 8 7 12 12 Si 1.86802 * 119.99633 * 199.42521 * 10 8 7 13 13 H 1.48500 * 109.46993 * 90.00352 * 12 10 8 14 14 H 1.48502 * 109.46860 * 209.99931 * 12 10 8 15 15 H 1.48491 * 109.47386 * 329.99714 * 12 10 8 16 16 C 1.40083 * 106.20546 * 180.13726 * 7 6 5 17 17 C 1.50704 * 125.94257 * 179.84231 * 16 7 6 18 18 C 1.52999 * 109.46951 * 179.71237 * 17 16 7 19 19 C 1.53001 * 109.47074 * 59.71371 * 17 16 7 20 20 C 1.52998 * 109.46972 * 299.71411 * 17 16 7 21 21 N 1.32035 * 108.11279 * 359.57696 * 16 7 6 22 22 C 1.33399 * 110.02010 * 0.26192 * 21 16 7 23 23 H 1.08993 * 109.47095 * 270.02389 * 1 2 3 24 24 H 1.08999 * 109.46874 * 30.03103 * 1 2 3 25 25 H 1.09004 * 109.46728 * 150.02249 * 1 2 3 26 26 H 1.07989 * 120.15642 * 359.97438 * 3 2 1 27 27 H 1.07996 * 119.93412 * 180.02562 * 4 3 2 28 28 H 1.07992 * 119.71216 * 180.02562 * 5 4 3 29 29 H 0.96997 * 120.00042 * 181.15120 * 11 10 8 30 30 H 1.08997 * 109.47197 * 300.00313 * 18 17 16 31 31 H 1.09001 * 109.47200 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47350 * 60.00131 * 18 17 16 33 33 H 1.09001 * 109.47093 * 179.97438 * 19 17 16 34 34 H 1.08997 * 109.47116 * 299.99829 * 19 17 16 35 35 H 1.08997 * 109.46963 * 59.99755 * 19 17 16 36 36 H 1.09001 * 109.47047 * 299.99697 * 20 17 16 37 37 H 1.08997 * 109.47372 * 60.00076 * 20 17 16 38 38 H 1.09001 * 109.46704 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1795 0.0000 4 6 3.5971 1.1652 0.0005 5 6 4.2645 -0.0122 0.0016 6 7 3.5858 -1.1936 0.0016 7 6 4.0063 -2.5130 0.0080 8 6 5.3265 -2.9732 0.0170 9 1 5.5842 -3.8848 -0.5016 10 6 6.3136 -2.2531 0.6980 11 7 5.9738 -1.3893 1.6227 12 14 8.1161 -2.5230 0.2889 13 1 8.5252 -1.5851 -0.7874 14 1 8.9406 -2.2772 1.4994 15 1 8.3156 -3.9209 -0.1703 16 6 2.8433 -3.2939 0.0009 17 6 2.7891 -4.8000 0.0007 18 6 1.3292 -5.2577 -0.0010 19 6 3.4901 -5.3357 1.2507 20 6 3.4930 -5.3354 -1.2477 21 7 1.8029 -2.4809 0.0002 22 6 2.2148 -1.2121 0.0007 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6627 2.1188 -0.0004 27 1 4.1455 2.0956 0.0010 28 1 5.3445 -0.0153 0.0024 29 1 6.6573 -0.8778 2.0832 30 1 0.8278 -4.8762 0.8884 31 1 1.2900 -6.3470 -0.0006 32 1 0.8298 -4.8761 -0.8915 33 1 3.4505 -6.4249 1.2508 34 1 4.5302 -5.0095 1.2519 35 1 2.9887 -4.9541 2.1401 36 1 2.9935 -4.9538 -2.1383 37 1 4.5330 -5.0093 -1.2465 38 1 3.4534 -6.4247 -1.2481 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031916229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:44 Heat of formation + Delta-G solvation = 52.895451 kcal Electronic energy + Delta-G solvation = -19875.387273 eV Core-core repulsion = 17103.774982 eV Total energy + Delta-G solvation = -2771.612290 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01971 -36.98958 -34.86478 -34.14611 -32.58524 -29.62710 -28.71099 -26.43185 -26.34842 -25.91736 -24.92903 -21.96890 -21.23156 -20.09309 -17.79503 -17.54757 -15.72186 -15.20832 -15.13370 -14.52688 -14.33793 -13.44017 -13.33703 -13.20591 -13.12571 -12.73924 -12.54699 -11.92559 -11.71028 -11.62033 -11.40538 -11.36178 -11.13580 -10.88838 -10.79359 -10.66953 -10.47264 -10.28004 -10.14647 -9.93517 -9.80291 -9.42302 -9.08341 -8.56784 -7.29895 -7.01651 -6.44295 -4.33467 2.01180 2.57367 2.99365 3.01449 3.04121 3.84934 4.03302 4.28665 4.80770 4.95926 5.38776 5.61793 5.70933 5.82777 5.92575 5.95055 5.97896 6.20415 6.24755 6.28541 6.30969 6.38739 6.43985 6.55551 6.58844 6.65897 6.69207 6.82408 6.90795 7.03617 7.06897 7.13764 7.20843 7.25471 7.32327 7.45517 7.66436 7.91739 8.27424 8.46912 8.65588 8.90916 9.50304 10.08742 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.011517 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.209159 B = 2430.571045 C = 4034.051734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.041 4.041 3 C -0.156 4.156 4 C -0.200 4.200 5 C 0.123 3.877 6 N -0.374 5.374 7 C 0.185 3.815 8 C -0.450 4.450 9 H 0.101 0.899 10 C 0.068 3.932 11 N -0.811 5.811 12 Si 0.905 3.095 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.260 1.260 16 C -0.048 4.048 17 C 0.041 3.959 18 C -0.122 4.122 19 C -0.135 4.135 20 C -0.139 4.139 21 N -0.469 5.469 22 C 0.123 3.877 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.146 0.854 29 H 0.282 0.718 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 -0.051 -2.272 2.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.179 4.179 4 C -0.222 4.222 5 C 0.001 3.999 6 N -0.051 5.051 7 C 0.073 3.927 8 C -0.485 4.485 9 H 0.118 0.882 10 C -0.148 4.148 11 N -0.440 5.440 12 Si 0.730 3.270 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.183 1.183 16 C -0.183 4.183 17 C 0.039 3.961 18 C -0.179 4.179 19 C -0.193 4.193 20 C -0.196 4.196 21 N -0.188 5.188 22 C -0.113 4.113 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.478 -0.191 -2.095 3.251 hybrid contribution 1.904 0.549 0.151 1.987 sum -0.574 0.358 -1.945 2.059 Atomic orbital electron populations 1.20483 0.91207 1.01830 1.01472 1.18621 0.95150 0.89449 1.01132 1.20370 0.93697 0.96311 1.07511 1.20313 0.94483 0.96281 1.11103 1.21484 0.98067 0.83604 0.96789 1.42638 1.07294 1.05678 1.49477 1.18524 0.94739 0.78993 1.00431 1.18498 0.89918 1.09675 1.30417 0.88164 1.25870 1.01556 0.94383 0.92970 1.69941 1.36492 1.20943 1.16623 0.86326 0.81675 0.80233 0.78793 1.19447 1.20373 1.18341 1.20692 0.87770 0.93775 1.16048 1.18388 0.94616 0.88226 0.94833 1.21625 0.96093 0.98243 1.01951 1.21818 1.02444 0.98116 0.96878 1.21923 1.01739 0.98784 0.97158 1.69605 1.31695 0.97779 1.19729 1.19803 0.81036 0.93275 1.17235 0.92059 0.92552 0.91296 0.86869 0.86001 0.83626 0.90746 0.92993 0.94249 0.93054 0.94190 0.90821 0.93700 0.93599 0.91429 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 10.01 36.01 0.36 -1.25 16 2 C -0.04 -0.88 5.90 -104.42 -0.62 -1.50 16 3 C -0.16 -3.05 9.73 -39.46 -0.38 -3.43 16 4 C -0.20 -4.04 10.00 -39.89 -0.40 -4.44 16 5 C 0.12 2.88 9.28 -16.62 -0.15 2.72 16 6 N -0.37 -9.57 2.90 -60.03 -0.17 -9.74 16 7 C 0.19 4.78 6.10 -83.58 -0.51 4.27 16 8 C -0.45 -11.06 7.12 -38.38 -0.27 -11.34 16 9 H 0.10 2.35 5.56 -52.49 -0.29 2.06 16 10 C 0.07 1.61 4.53 -17.28 -0.08 1.53 16 11 N -0.81 -20.07 10.63 55.55 0.59 -19.48 16 12 Si 0.91 17.83 29.60 -169.99 -5.03 12.79 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 14 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 16 C -0.05 -1.18 5.59 -81.81 -0.46 -1.64 16 17 C 0.04 0.83 0.80 -155.66 -0.12 0.71 16 18 C -0.12 -2.26 7.96 37.16 0.30 -1.96 16 19 C -0.13 -2.65 8.33 37.16 0.31 -2.34 16 20 C -0.14 -2.56 8.34 37.16 0.31 -2.25 16 21 N -0.47 -11.84 10.48 -8.10 -0.08 -11.93 16 22 C 0.12 3.07 7.48 -155.51 -1.16 1.91 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 25 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 26 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 28 H 0.15 3.38 6.07 -52.49 -0.32 3.06 16 29 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.56 6.51 -51.93 -0.34 1.22 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.31 5.42 -51.93 -0.28 1.02 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -27.87 305.36 -8.41 -36.29 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.43 Total: 6.48 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.88 Total: -19.01 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.33 Total: -41.15 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.87 -8.41 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031916229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.183 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds