Wall clock time and date at job start Mon Mar 30 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 C 1.53000 * 109.47443 * 64.99573 * 3 2 1 5 5 C 1.52999 * 109.47257 * 184.99925 * 4 3 2 6 6 C 1.50706 * 109.47339 * 185.00122 * 3 2 1 7 7 N 1.30096 * 124.97843 * 299.97154 * 6 3 2 8 8 C 1.35896 * 109.73257 * 180.02562 * 7 6 3 9 9 C 1.39681 * 133.49688 * 180.02562 * 8 7 6 10 10 C 1.37708 * 119.77430 * 179.97438 * 9 8 7 11 11 C 1.38726 * 120.52227 * 359.97438 * 10 9 8 12 12 C 1.37959 * 120.43267 * 0.02562 * 11 10 9 13 13 C 1.38712 * 119.83526 * 359.96662 * 12 11 10 14 14 N 1.36536 * 124.98312 * 119.99716 * 6 3 2 15 15 C 1.37313 * 126.39662 * 359.97438 * 14 6 3 16 16 H 1.08000 * 119.99744 * 33.78769 * 15 14 6 17 17 C 1.38908 * 120.00157 * 213.77846 * 15 14 6 18 18 N 1.31381 * 120.00135 * 20.14360 * 17 15 14 19 19 Si 1.86803 * 120.00052 * 200.14776 * 17 15 14 20 20 H 1.48494 * 109.47064 * 89.99941 * 19 17 15 21 21 H 1.48498 * 109.46875 * 209.99974 * 19 17 15 22 22 H 1.48494 * 109.46973 * 329.99694 * 19 17 15 23 23 H 1.08998 * 109.46763 * 60.00207 * 1 2 3 24 24 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47267 * 300.00492 * 1 2 3 26 26 H 1.09003 * 109.47267 * 239.99508 * 2 1 3 27 27 H 1.09007 * 109.47364 * 119.99757 * 2 1 3 28 28 H 1.08999 * 109.47141 * 304.99716 * 3 2 1 29 29 H 1.08995 * 109.46957 * 305.00411 * 4 3 2 30 30 H 1.09005 * 109.46521 * 65.00339 * 4 3 2 31 31 H 1.08996 * 109.47134 * 300.00488 * 5 4 3 32 32 H 1.09006 * 109.46618 * 60.00360 * 5 4 3 33 33 H 1.09000 * 109.47205 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.11349 * 359.94047 * 9 8 7 35 35 H 1.08007 * 119.74065 * 179.71799 * 10 9 8 36 36 H 1.07996 * 119.78295 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.08574 * 179.97438 * 12 11 10 38 38 H 0.96993 * 120.00414 * 178.90632 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0354 3.6024 1.2558 6 6 3.5419 1.4443 -0.1239 7 7 4.3605 0.8860 0.7193 8 6 5.6420 1.0755 0.3086 9 6 6.8832 0.6966 0.8253 10 6 8.0368 1.0481 0.1605 11 6 7.9764 1.7755 -1.0192 12 6 6.7586 2.1576 -1.5430 13 6 5.5862 1.8122 -0.8870 14 7 4.2431 2.0324 -1.1371 15 6 3.7143 2.7145 -2.2051 16 1 2.8114 3.2942 -2.0820 17 6 4.3407 2.6591 -3.4436 18 7 5.1757 1.6816 -3.7144 19 14 3.9960 3.9746 -4.7243 20 1 4.9640 5.0890 -4.5621 21 1 4.1356 3.3915 -6.0828 22 1 2.6145 4.4891 -4.5460 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6054 1.9815 -0.8418 29 1 0.5563 2.0471 1.4400 30 1 2.1408 1.6420 2.1426 31 1 3.1143 3.6819 1.1230 32 1 1.5298 4.0870 0.4204 33 1 1.7474 4.0897 2.1873 34 1 6.9379 0.1304 1.7434 35 1 8.9964 0.7588 0.5629 36 1 8.8886 2.0451 -1.5305 37 1 6.7181 2.7241 -2.4616 38 1 5.6010 1.6340 -4.5848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031934229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:15 Heat of formation + Delta-G solvation = 42.831041 kcal Electronic energy + Delta-G solvation = -19664.630589 eV Core-core repulsion = 16892.581874 eV Total energy + Delta-G solvation = -2772.048716 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80023 -36.83339 -35.36158 -34.05483 -31.30553 -31.16904 -29.11348 -28.40812 -25.98258 -25.16432 -22.39102 -21.76418 -20.98052 -20.31963 -18.72506 -17.54373 -16.24353 -15.38268 -14.91757 -14.63841 -14.26408 -14.08737 -13.54633 -13.43337 -12.99106 -12.82818 -12.69158 -12.07686 -11.88166 -11.64936 -11.45213 -11.35461 -11.14721 -10.91153 -10.82763 -10.73790 -10.62720 -10.38044 -10.15337 -10.07517 -9.92642 -9.45234 -8.86112 -8.59599 -7.19761 -6.86647 -6.66191 -4.49528 2.18082 2.76346 2.99615 3.01708 3.03717 3.77449 4.04841 4.55694 4.70541 5.12718 5.16016 5.39345 5.48474 5.63323 5.67412 5.78063 5.83522 5.98588 6.01073 6.14120 6.20593 6.23987 6.28970 6.32991 6.43036 6.56780 6.66221 6.72438 6.74351 6.79023 6.85139 6.92863 6.98199 7.13287 7.26505 7.56234 7.67558 7.90506 8.11790 8.21199 8.65515 9.27133 9.44807 10.21820 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.010612 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.803680 B = 2637.918520 C = 3999.923736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.006 3.994 4 C -0.110 4.110 5 C -0.148 4.148 6 C 0.227 3.773 7 N -0.527 5.527 8 C 0.027 3.973 9 C -0.090 4.090 10 C -0.146 4.146 11 C -0.159 4.159 12 C -0.044 4.044 13 C 0.046 3.954 14 N -0.286 5.286 15 C -0.359 4.359 16 H 0.108 0.892 17 C 0.055 3.945 18 N -0.820 5.820 19 Si 0.925 3.075 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.263 1.263 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 1.322 3.286 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.014 4.014 4 C -0.149 4.149 5 C -0.205 4.205 6 C -0.035 4.035 7 N -0.250 5.250 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.167 4.167 11 C -0.180 4.180 12 C -0.064 4.064 13 C -0.070 4.070 14 N 0.044 4.956 15 C -0.487 4.487 16 H 0.125 0.875 17 C -0.158 4.158 18 N -0.450 5.450 19 Si 0.749 3.251 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.187 1.187 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.038 0.891 3.685 5.538 hybrid contribution 0.286 0.904 -1.688 1.936 sum -3.752 1.795 1.997 4.614 Atomic orbital electron populations 1.21832 0.96202 1.01095 1.01601 1.21429 0.94722 0.95817 1.02705 1.19508 0.86436 0.96823 0.98633 1.21561 1.00148 0.95630 0.97518 1.21733 1.02115 0.96202 1.00500 1.23033 0.94709 0.96554 0.89189 1.70104 0.98978 1.26164 1.29741 1.18897 0.92222 1.03482 0.95044 1.19853 0.89618 1.01927 0.99625 1.20471 0.96561 1.02584 0.97064 1.20551 0.96194 1.03467 0.97820 1.20036 0.89417 0.99264 0.97697 1.18665 0.85633 1.05469 0.97188 1.41161 1.02970 1.34768 1.16743 1.19591 1.13281 1.28986 0.86856 0.87478 1.25536 0.95634 0.96306 0.98315 1.70054 1.25368 1.26230 1.23299 0.85960 0.79760 0.80383 0.78966 1.19442 1.20273 1.18743 0.92888 0.93124 0.92631 0.92051 0.91308 0.89790 0.91896 0.91166 0.92586 0.93097 0.93461 0.87547 0.87576 0.87629 0.86796 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.87 5.38 -26.73 -0.14 -2.01 16 3 C 0.01 0.12 2.19 -91.77 -0.20 -0.08 16 4 C -0.11 -1.81 5.26 -26.73 -0.14 -1.95 16 5 C -0.15 -2.44 9.73 37.16 0.36 -2.08 16 6 C 0.23 5.39 5.32 -154.37 -0.82 4.57 16 7 N -0.53 -13.09 11.25 -8.10 -0.09 -13.18 16 8 C 0.03 0.70 7.22 -84.66 -0.61 0.08 16 9 C -0.09 -2.00 10.10 -39.24 -0.40 -2.40 16 10 C -0.15 -2.96 10.01 -39.59 -0.40 -3.35 16 11 C -0.16 -3.40 10.03 -39.50 -0.40 -3.79 16 12 C -0.04 -1.08 8.57 -39.51 -0.34 -1.42 16 13 C 0.05 1.21 6.15 -83.86 -0.52 0.70 16 14 N -0.29 -7.43 2.86 -56.64 -0.16 -7.59 16 15 C -0.36 -9.06 9.29 -14.85 -0.14 -9.20 16 16 H 0.11 2.54 7.36 -52.49 -0.39 2.16 16 17 C 0.05 1.35 4.53 -17.50 -0.08 1.27 16 18 N -0.82 -21.28 10.61 55.49 0.59 -20.69 16 19 Si 0.93 18.59 29.60 -169.99 -5.03 13.56 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.67 6.46 -51.93 -0.34 0.33 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.63 6.98 -51.93 -0.36 1.26 16 29 H 0.06 0.86 6.34 -51.93 -0.33 0.53 16 30 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 31 H 0.06 1.10 7.38 -51.93 -0.38 0.71 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 36 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.11 2.85 6.26 -52.49 -0.33 2.53 16 38 H 0.28 6.75 8.31 -40.82 -0.34 6.42 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -28.58 309.34 -8.98 -37.56 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.49 Total: 7.02 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -3.46 Total: -21.32 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.34 Total: -41.47 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.58 -8.98 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031934229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.386 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds