Wall clock time and date at job start Mon Mar 30 2020 07:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 C 1.53000 * 109.47443 * 64.99573 * 3 2 1 5 5 C 1.52999 * 109.47257 * 184.99925 * 4 3 2 6 6 C 1.50706 * 109.47339 * 185.00122 * 3 2 1 7 7 N 1.30096 * 124.97843 * 299.97154 * 6 3 2 8 8 C 1.35896 * 109.73257 * 180.02562 * 7 6 3 9 9 C 1.39681 * 133.49688 * 180.02562 * 8 7 6 10 10 C 1.37708 * 119.77430 * 179.97438 * 9 8 7 11 11 C 1.38726 * 120.52227 * 359.97438 * 10 9 8 12 12 C 1.37959 * 120.43267 * 0.02562 * 11 10 9 13 13 C 1.38712 * 119.83526 * 359.96662 * 12 11 10 14 14 N 1.36536 * 124.98312 * 119.99716 * 6 3 2 15 15 C 1.37313 * 126.39662 * 359.97438 * 14 6 3 16 16 H 1.08000 * 119.99744 * 33.78769 * 15 14 6 17 17 C 1.38908 * 120.00157 * 213.77846 * 15 14 6 18 18 N 1.31381 * 120.00135 * 20.14360 * 17 15 14 19 19 Si 1.86803 * 120.00052 * 200.14776 * 17 15 14 20 20 H 1.48494 * 109.47064 * 89.99941 * 19 17 15 21 21 H 1.48498 * 109.46875 * 209.99974 * 19 17 15 22 22 H 1.48494 * 109.46973 * 329.99694 * 19 17 15 23 23 H 1.08998 * 109.46763 * 60.00207 * 1 2 3 24 24 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47267 * 300.00492 * 1 2 3 26 26 H 1.09003 * 109.47267 * 239.99508 * 2 1 3 27 27 H 1.09007 * 109.47364 * 119.99757 * 2 1 3 28 28 H 1.08999 * 109.47141 * 304.99716 * 3 2 1 29 29 H 1.08995 * 109.46957 * 305.00411 * 4 3 2 30 30 H 1.09005 * 109.46521 * 65.00339 * 4 3 2 31 31 H 1.08996 * 109.47134 * 300.00488 * 5 4 3 32 32 H 1.09006 * 109.46618 * 60.00360 * 5 4 3 33 33 H 1.09000 * 109.47205 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.11349 * 359.94047 * 9 8 7 35 35 H 1.08007 * 119.74065 * 179.71799 * 10 9 8 36 36 H 1.07996 * 119.78295 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.08574 * 179.97438 * 12 11 10 38 38 H 0.96993 * 120.00414 * 178.90632 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0354 3.6024 1.2558 6 6 3.5419 1.4443 -0.1239 7 7 4.3605 0.8860 0.7193 8 6 5.6420 1.0755 0.3086 9 6 6.8832 0.6966 0.8253 10 6 8.0368 1.0481 0.1605 11 6 7.9764 1.7755 -1.0192 12 6 6.7586 2.1576 -1.5430 13 6 5.5862 1.8122 -0.8870 14 7 4.2431 2.0324 -1.1371 15 6 3.7143 2.7145 -2.2051 16 1 2.8114 3.2942 -2.0820 17 6 4.3407 2.6591 -3.4436 18 7 5.1757 1.6816 -3.7144 19 14 3.9960 3.9746 -4.7243 20 1 4.9640 5.0890 -4.5621 21 1 4.1356 3.3915 -6.0828 22 1 2.6145 4.4891 -4.5460 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6054 1.9815 -0.8418 29 1 0.5563 2.0471 1.4400 30 1 2.1408 1.6420 2.1426 31 1 3.1143 3.6819 1.1230 32 1 1.5298 4.0870 0.4204 33 1 1.7474 4.0897 2.1873 34 1 6.9379 0.1304 1.7434 35 1 8.9964 0.7588 0.5629 36 1 8.8886 2.0451 -1.5305 37 1 6.7181 2.7241 -2.4616 38 1 5.6010 1.6340 -4.5848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031934229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:14 Heat of formation + Delta-G solvation = 28.710112 kcal Electronic energy + Delta-G solvation = -19665.242919 eV Core-core repulsion = 16892.581874 eV Total energy + Delta-G solvation = -2772.661045 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.60410 -38.43081 -36.95555 -35.88153 -33.04519 -32.58975 -30.88659 -30.06223 -27.47850 -27.02724 -23.79719 -23.32447 -22.75242 -22.03773 -20.40348 -19.33182 -17.98680 -17.22610 -16.51369 -16.30894 -15.92027 -15.45781 -15.08590 -14.88262 -14.73462 -14.61002 -14.17104 -13.73181 -13.35399 -13.14041 -13.01950 -12.84150 -12.62695 -12.52357 -12.34948 -12.25960 -12.15494 -12.00387 -11.63288 -11.54292 -11.39122 -11.19087 -10.71419 -10.47322 -9.03378 -8.67579 -8.49308 -6.42239 0.39628 1.01742 1.33759 1.39139 1.47699 2.07902 2.25087 2.81270 2.88603 3.32033 3.56207 3.94621 4.07353 4.13358 4.30585 4.39297 4.40202 4.50250 4.59134 4.67196 4.75710 4.86295 4.88889 4.97739 5.01841 5.06125 5.10766 5.15818 5.21001 5.28081 5.31334 5.37207 5.47532 5.49853 5.54602 5.80132 5.89366 6.11900 6.27449 6.42482 6.78879 7.42640 7.59179 8.39157 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.010612 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.803680 B = 2637.918520 C = 3999.923736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C 0.004 3.996 4 C -0.101 4.101 5 C -0.143 4.143 6 C 0.222 3.778 7 N -0.544 5.544 8 C -0.006 4.006 9 C -0.101 4.101 10 C -0.133 4.133 11 C -0.150 4.150 12 C -0.074 4.074 13 C 0.012 3.988 14 N -0.308 5.308 15 C -0.383 4.383 16 H 0.113 0.887 17 C 0.016 3.984 18 N -0.857 5.857 19 Si 0.995 3.005 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.250 1.250 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.014 0.986 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 1.755 3.783 5.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.141 4.141 3 C -0.016 4.016 4 C -0.139 4.139 5 C -0.201 4.201 6 C -0.041 4.041 7 N -0.267 5.267 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.154 4.154 11 C -0.170 4.170 12 C -0.095 4.095 13 C -0.102 4.102 14 N 0.021 4.979 15 C -0.511 4.511 16 H 0.130 0.870 17 C -0.194 4.194 18 N -0.487 5.487 19 Si 0.816 3.184 20 H -0.194 1.194 21 H -0.198 1.198 22 H -0.173 1.173 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.117 0.883 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.524 1.318 4.199 6.311 hybrid contribution 0.532 0.715 -1.771 1.983 sum -3.992 2.033 2.428 5.095 Atomic orbital electron populations 1.21777 0.92621 1.02620 1.02777 1.21373 0.97721 0.94112 1.00880 1.19746 0.83655 0.98255 0.99957 1.21532 1.02244 0.94882 0.95265 1.21694 0.99383 0.96792 1.02193 1.23946 0.96558 0.95323 0.88244 1.70088 0.99195 1.27082 1.30354 1.19501 0.93491 1.04344 0.95509 1.20277 0.89125 1.02089 1.00642 1.20961 0.97889 1.00601 0.95935 1.21010 0.96185 1.01884 0.97930 1.20161 0.90462 1.00971 0.97900 1.19159 0.86411 1.06502 0.98171 1.41426 1.03280 1.35689 1.17472 1.19947 1.14064 1.29663 0.87395 0.86951 1.26463 0.95037 0.97892 0.99959 1.70156 1.26588 1.28037 1.23916 0.84921 0.80087 0.77322 0.76117 1.19366 1.19811 1.17345 0.92510 0.91516 0.90552 0.95041 0.91959 0.90387 0.88072 0.92267 0.96670 0.92481 0.90747 0.85363 0.82861 0.84227 0.88293 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.67 71.98 0.70 -2.77 16 2 C -0.10 -3.53 5.38 30.59 0.16 -3.37 16 3 C 0.00 0.16 2.19 -11.54 -0.03 0.14 16 4 C -0.10 -3.21 5.26 30.59 0.16 -3.05 16 5 C -0.14 -4.64 9.73 71.98 0.70 -3.94 16 6 C 0.22 10.91 5.32 137.76 0.73 11.65 16 7 N -0.54 -27.94 11.25 -179.55 -2.02 -29.96 16 8 C -0.01 -0.29 7.22 39.42 0.28 0.00 16 9 C -0.10 -4.44 10.10 22.49 0.23 -4.21 16 10 C -0.13 -5.10 10.01 22.26 0.22 -4.88 16 11 C -0.15 -6.20 10.03 22.32 0.22 -5.98 16 12 C -0.07 -3.75 8.57 22.32 0.19 -3.56 16 13 C 0.01 0.68 6.15 38.78 0.24 0.92 16 14 N -0.31 -16.67 2.86 -333.12 -0.95 -17.62 16 15 C -0.38 -20.05 9.29 84.00 0.78 -19.27 16 16 H 0.11 5.50 7.36 -2.91 -0.02 5.48 16 17 C 0.02 0.78 4.53 84.92 0.38 1.17 16 18 N -0.86 -45.98 10.61 21.65 0.23 -45.75 16 19 Si 0.99 38.55 29.60 68.60 2.03 40.58 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.57 6.46 -2.39 -0.02 1.56 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.08 3.06 6.98 -2.39 -0.02 3.05 16 29 H 0.10 2.44 6.34 -2.39 -0.02 2.42 16 30 H 0.06 2.01 8.13 -2.38 -0.02 2.00 16 31 H 0.01 0.58 7.38 -2.39 -0.02 0.56 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.10 5.17 6.26 -2.91 -0.02 5.15 16 38 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -65.43 309.34 5.31 -60.12 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 1.04 Total: 29.78 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 4.98 Total: -37.15 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -2.74 Total: -93.33 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -65.43 5.31 -60.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031934229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.831 kcal (2) G-P(sol) polarization free energy of solvation -65.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds