Wall clock time and date at job start Mon Mar 30 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37759 * 119.73887 * 2 1 4 4 C 1.39641 * 119.77037 * 180.21216 * 3 2 1 5 5 N 1.35900 * 133.50731 * 179.25818 * 4 3 2 6 6 C 1.30086 * 109.73954 * 180.02562 * 5 4 3 7 7 C 1.50695 * 124.97915 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47140 * 299.97689 * 7 6 5 9 9 C 1.53003 * 109.47090 * 59.97257 * 7 6 5 10 10 N 1.36539 * 110.04856 * 0.02562 * 6 5 4 11 11 C 1.37313 * 126.39965 * 179.97438 * 10 6 5 12 12 H 1.07994 * 119.99782 * 325.97503 * 11 10 6 13 13 C 1.38913 * 119.99609 * 145.70041 * 11 10 6 14 14 N 1.31374 * 120.00332 * 341.15801 * 13 11 10 15 15 Si 1.86800 * 119.99389 * 161.15668 * 13 11 10 16 16 H 1.48500 * 109.47207 * 60.00507 * 15 13 11 17 17 H 1.48507 * 109.46936 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47348 * 299.99820 * 15 13 11 19 19 C 1.38396 * 107.20095 * 0.26238 * 10 6 5 20 20 C 1.38669 * 134.04189 * 179.73792 * 19 10 6 21 21 C 1.38006 * 119.82853 * 180.02562 * 20 19 10 22 22 C 1.50698 * 119.77924 * 180.02562 * 21 20 19 23 23 H 1.08999 * 109.46954 * 270.38288 * 1 2 3 24 24 H 1.09001 * 109.46721 * 30.37948 * 1 2 3 25 25 H 1.08998 * 109.46980 * 150.38121 * 1 2 3 26 26 H 1.07995 * 120.11607 * 359.51868 * 3 2 1 27 27 H 1.08996 * 109.47470 * 179.97438 * 7 6 5 28 28 H 1.09004 * 109.46881 * 60.00118 * 8 7 6 29 29 H 1.09005 * 109.47604 * 179.97438 * 8 7 6 30 30 H 1.08996 * 109.47269 * 300.00103 * 8 7 6 31 31 H 1.08996 * 109.47498 * 300.00636 * 9 7 6 32 32 H 1.08999 * 109.46724 * 60.00384 * 9 7 6 33 33 H 1.09002 * 109.47394 * 179.97438 * 9 7 6 34 34 H 0.97006 * 120.00519 * 185.60534 * 14 13 11 35 35 H 1.07993 * 120.08484 * 0.02562 * 20 19 10 36 36 H 1.08997 * 109.47136 * 90.00162 * 22 21 20 37 37 H 1.08996 * 109.47218 * 209.99722 * 22 21 20 38 38 H 1.08997 * 109.47375 * 329.99706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1962 0.0000 4 6 3.5868 1.1969 -0.0045 5 7 4.5218 2.1831 -0.0184 6 6 5.7127 1.6595 -0.0170 7 6 7.0005 2.4420 -0.0294 8 6 7.0578 3.3097 -1.2883 9 6 7.0656 3.3366 1.2100 10 7 5.6249 0.2970 -0.0025 11 6 6.6755 -0.5872 0.0026 12 1 7.5857 -0.3473 -0.5267 13 6 6.5694 -1.7877 0.6935 14 7 5.6551 -1.9305 1.6260 15 14 7.7270 -3.1990 0.2964 16 1 9.1290 -2.7711 0.5339 17 1 7.4090 -4.3597 1.1665 18 1 7.5626 -3.5886 -1.1271 19 6 4.2793 -0.0265 -0.0007 20 6 3.5749 -1.2209 0.0066 21 6 2.1950 -1.2041 0.0058 22 6 1.4306 -2.5029 0.0144 23 1 -0.3633 0.0069 1.0276 24 1 -0.3633 0.8866 -0.5197 25 1 -0.3633 -0.8934 -0.5079 26 1 1.6481 2.1300 -0.0078 27 1 7.8447 1.7525 -0.0247 28 1 6.2136 3.9993 -1.2930 29 1 7.9891 3.8761 -1.2971 30 1 7.0114 2.6725 -2.1713 31 1 6.2214 4.0261 1.2053 32 1 7.0248 2.7184 2.1068 33 1 7.9973 3.9023 1.2013 34 1 5.6327 -2.7374 2.1640 35 1 4.1049 -2.1619 0.0130 36 1 1.2458 -2.8089 1.0440 37 1 0.4796 -2.3682 -0.5008 38 1 2.0136 -3.2709 -0.4939 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031943398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:29 Heat of formation + Delta-G solvation = 43.103511 kcal Electronic energy + Delta-G solvation = -19503.835191 eV Core-core repulsion = 16731.798290 eV Total energy + Delta-G solvation = -2772.036900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77145 -37.24912 -34.57715 -34.02321 -31.39294 -30.76263 -30.09138 -26.61232 -26.47148 -25.09789 -24.85349 -22.06863 -20.60863 -20.05205 -18.61631 -17.34966 -16.01676 -15.19203 -14.80331 -14.16006 -14.09448 -13.93034 -13.52654 -13.30253 -12.84608 -12.73156 -12.39364 -12.21466 -11.99047 -11.72301 -11.64654 -11.40343 -11.32124 -11.18598 -10.81862 -10.73905 -10.67280 -10.56678 -10.35267 -10.11763 -9.85646 -9.34942 -8.83646 -8.58347 -7.08094 -6.73925 -6.63012 -4.48505 2.17688 2.71661 2.97709 3.01234 3.03234 3.76900 4.05439 4.57203 4.70981 5.05541 5.20871 5.60610 5.66102 5.68641 5.77356 5.83460 5.93102 6.07108 6.09893 6.12597 6.16156 6.28000 6.30571 6.37703 6.39773 6.43690 6.48307 6.71752 6.77346 6.80776 6.88287 6.93899 7.03688 7.14132 7.26674 7.57838 7.72902 7.93778 8.12707 8.22145 8.65872 9.28075 9.45805 10.23317 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.010563 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.350601 B = 2650.081759 C = 4368.707507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.114 4.114 3 C -0.087 4.087 4 C 0.028 3.972 5 N -0.527 5.527 6 C 0.221 3.779 7 C -0.003 4.003 8 C -0.135 4.135 9 C -0.132 4.132 10 N -0.288 5.288 11 C -0.361 4.361 12 H 0.107 0.893 13 C 0.055 3.945 14 N -0.822 5.822 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.265 1.265 19 C 0.047 3.953 20 C -0.038 4.038 21 C -0.127 4.127 22 C -0.097 4.097 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.281 0.719 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 1.041 -2.283 2.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.107 4.107 4 C -0.096 4.096 5 N -0.250 5.250 6 C -0.041 4.041 7 C -0.023 4.023 8 C -0.193 4.193 9 C -0.191 4.191 10 N 0.042 4.958 11 C -0.489 4.489 12 H 0.125 0.875 13 C -0.158 4.158 14 N -0.451 5.451 15 Si 0.751 3.249 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.190 1.190 19 C -0.068 4.068 20 C -0.058 4.058 21 C -0.130 4.130 22 C -0.154 4.154 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.630 1.612 -2.159 3.149 hybrid contribution 0.847 -1.685 0.167 1.893 sum -0.783 -0.073 -1.992 2.142 Atomic orbital electron populations 1.20656 0.92560 1.01419 1.01038 1.19076 0.94482 0.92288 1.05788 1.19647 0.90385 0.96438 1.04182 1.18857 0.93480 0.89321 1.07923 1.70083 0.97326 1.31036 1.26531 1.23093 0.94814 0.81458 1.04729 1.19375 0.91548 0.95372 0.96014 1.21744 1.01364 0.99455 0.96722 1.21698 1.01150 0.99173 0.97040 1.41150 1.04001 1.04617 1.46034 1.19568 0.95804 0.98218 1.35348 0.87522 1.25561 0.97252 0.99229 0.93725 1.69997 1.31948 1.28136 1.15050 0.85991 0.80016 0.79552 0.79320 1.19100 1.20197 1.19007 1.18645 0.84307 0.95508 1.08381 1.19842 0.91624 0.96039 0.98276 1.19147 0.92778 0.93943 1.07108 1.20613 0.99026 0.94737 1.01018 0.92503 0.92748 0.92111 0.87523 0.89798 0.91865 0.92855 0.93123 0.91978 0.92836 0.92916 0.90811 0.86657 0.92530 0.92280 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 9.58 36.01 0.35 -1.21 16 2 C -0.11 -2.32 5.88 -104.63 -0.61 -2.93 16 3 C -0.09 -1.95 9.74 -39.23 -0.38 -2.33 16 4 C 0.03 0.72 7.23 -84.66 -0.61 0.11 16 5 N -0.53 -13.38 11.26 -8.11 -0.09 -13.47 16 6 C 0.22 5.40 6.34 -154.38 -0.98 4.42 16 7 C 0.00 -0.05 3.25 -91.77 -0.30 -0.35 16 8 C -0.13 -2.24 9.17 37.16 0.34 -1.90 16 9 C -0.13 -2.31 9.17 37.16 0.34 -1.97 16 10 N -0.29 -7.65 2.85 -56.65 -0.16 -7.81 16 11 C -0.36 -9.27 9.28 -14.85 -0.14 -9.41 16 12 H 0.11 2.55 7.37 -52.49 -0.39 2.17 16 13 C 0.06 1.36 4.57 -17.50 -0.08 1.28 16 14 N -0.82 -21.47 10.59 55.49 0.59 -20.88 16 15 Si 0.93 18.68 29.60 -169.99 -5.03 13.65 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 C 0.05 1.26 6.15 -83.86 -0.52 0.74 16 20 C -0.04 -0.93 8.21 -39.51 -0.32 -1.26 16 21 C -0.13 -2.71 5.88 -104.54 -0.62 -3.33 16 22 C -0.10 -1.65 9.58 36.00 0.35 -1.30 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.06 0.84 5.91 -51.93 -0.31 0.53 16 26 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.08 1.62 6.98 -51.93 -0.36 1.26 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.28 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.12 2.93 6.30 -52.49 -0.33 2.60 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.86 5.91 -51.93 -0.31 0.55 16 38 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 LS Contribution 309.79 15.07 4.67 4.67 Total: -1.00 -29.43 309.79 -8.69 -38.11 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.47 Total: 5.16 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -3.19 Total: -19.43 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.33 Total: -42.16 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.43 -8.69 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031943398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.217 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds