Wall clock time and date at job start Mon Mar 30 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37759 * 119.73887 * 2 1 4 4 C 1.39641 * 119.77037 * 180.21216 * 3 2 1 5 5 N 1.35900 * 133.50731 * 179.25818 * 4 3 2 6 6 C 1.30086 * 109.73954 * 180.02562 * 5 4 3 7 7 C 1.50695 * 124.97915 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47140 * 299.97689 * 7 6 5 9 9 C 1.53003 * 109.47090 * 59.97257 * 7 6 5 10 10 N 1.36539 * 110.04856 * 0.02562 * 6 5 4 11 11 C 1.37313 * 126.39965 * 179.97438 * 10 6 5 12 12 H 1.07994 * 119.99782 * 325.97503 * 11 10 6 13 13 C 1.38913 * 119.99609 * 145.70041 * 11 10 6 14 14 N 1.31374 * 120.00332 * 341.15801 * 13 11 10 15 15 Si 1.86800 * 119.99389 * 161.15668 * 13 11 10 16 16 H 1.48500 * 109.47207 * 60.00507 * 15 13 11 17 17 H 1.48507 * 109.46936 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47348 * 299.99820 * 15 13 11 19 19 C 1.38396 * 107.20095 * 0.26238 * 10 6 5 20 20 C 1.38669 * 134.04189 * 179.73792 * 19 10 6 21 21 C 1.38006 * 119.82853 * 180.02562 * 20 19 10 22 22 C 1.50698 * 119.77924 * 180.02562 * 21 20 19 23 23 H 1.08999 * 109.46954 * 270.38288 * 1 2 3 24 24 H 1.09001 * 109.46721 * 30.37948 * 1 2 3 25 25 H 1.08998 * 109.46980 * 150.38121 * 1 2 3 26 26 H 1.07995 * 120.11607 * 359.51868 * 3 2 1 27 27 H 1.08996 * 109.47470 * 179.97438 * 7 6 5 28 28 H 1.09004 * 109.46881 * 60.00118 * 8 7 6 29 29 H 1.09005 * 109.47604 * 179.97438 * 8 7 6 30 30 H 1.08996 * 109.47269 * 300.00103 * 8 7 6 31 31 H 1.08996 * 109.47498 * 300.00636 * 9 7 6 32 32 H 1.08999 * 109.46724 * 60.00384 * 9 7 6 33 33 H 1.09002 * 109.47394 * 179.97438 * 9 7 6 34 34 H 0.97006 * 120.00519 * 185.60534 * 14 13 11 35 35 H 1.07993 * 120.08484 * 0.02562 * 20 19 10 36 36 H 1.08997 * 109.47136 * 90.00162 * 22 21 20 37 37 H 1.08996 * 109.47218 * 209.99722 * 22 21 20 38 38 H 1.08997 * 109.47375 * 329.99706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1962 0.0000 4 6 3.5868 1.1969 -0.0045 5 7 4.5218 2.1831 -0.0184 6 6 5.7127 1.6595 -0.0170 7 6 7.0005 2.4420 -0.0294 8 6 7.0578 3.3097 -1.2883 9 6 7.0656 3.3366 1.2100 10 7 5.6249 0.2970 -0.0025 11 6 6.6755 -0.5872 0.0026 12 1 7.5857 -0.3473 -0.5267 13 6 6.5694 -1.7877 0.6935 14 7 5.6551 -1.9305 1.6260 15 14 7.7270 -3.1990 0.2964 16 1 9.1290 -2.7711 0.5339 17 1 7.4090 -4.3597 1.1665 18 1 7.5626 -3.5886 -1.1271 19 6 4.2793 -0.0265 -0.0007 20 6 3.5749 -1.2209 0.0066 21 6 2.1950 -1.2041 0.0058 22 6 1.4306 -2.5029 0.0144 23 1 -0.3633 0.0069 1.0276 24 1 -0.3633 0.8866 -0.5197 25 1 -0.3633 -0.8934 -0.5079 26 1 1.6481 2.1300 -0.0078 27 1 7.8447 1.7525 -0.0247 28 1 6.2136 3.9993 -1.2930 29 1 7.9891 3.8761 -1.2971 30 1 7.0114 2.6725 -2.1713 31 1 6.2214 4.0261 1.2053 32 1 7.0248 2.7184 2.1068 33 1 7.9973 3.9023 1.2013 34 1 5.6327 -2.7374 2.1640 35 1 4.1049 -2.1619 0.0130 36 1 1.2458 -2.8089 1.0440 37 1 0.4796 -2.3682 -0.5008 38 1 2.0136 -3.2709 -0.4939 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031943398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:26 Heat of formation + Delta-G solvation = 28.114329 kcal Electronic energy + Delta-G solvation = -19504.485171 eV Core-core repulsion = 16731.798290 eV Total energy + Delta-G solvation = -2772.686880 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.59744 -38.92043 -36.23331 -35.74770 -33.22298 -32.38581 -31.74999 -28.10090 -27.99178 -26.76337 -26.61220 -23.64443 -22.40028 -21.81700 -20.36490 -19.16096 -17.77234 -16.98083 -16.49489 -15.89566 -15.81017 -15.45996 -15.02440 -14.71987 -14.60000 -14.40583 -13.88716 -13.63236 -13.48601 -13.28723 -13.10389 -12.97562 -12.90518 -12.70425 -12.30602 -12.28436 -12.14442 -12.07369 -11.94527 -11.70894 -11.54860 -11.12661 -10.69596 -10.48422 -8.91780 -8.54344 -8.46571 -6.43252 0.37634 0.97348 1.32323 1.39328 1.46029 2.06217 2.23757 2.80208 2.86617 3.23911 3.55120 4.06315 4.12565 4.20048 4.30206 4.32972 4.48800 4.58425 4.66733 4.80601 4.83195 4.83726 4.92974 4.97722 4.99504 5.02070 5.07341 5.14215 5.15135 5.23816 5.28294 5.37181 5.39453 5.48014 5.48469 5.80900 5.99739 6.14758 6.26627 6.44353 6.77329 7.41133 7.57795 8.39107 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.010563 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.350601 B = 2650.081759 C = 4368.707507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.107 4.107 3 C -0.102 4.102 4 C -0.006 4.006 5 N -0.544 5.544 6 C 0.209 3.791 7 C -0.008 4.008 8 C -0.124 4.124 9 C -0.123 4.123 10 N -0.311 5.311 11 C -0.389 4.389 12 H 0.114 0.886 13 C 0.016 3.984 14 N -0.858 5.858 15 Si 0.999 3.001 16 H -0.253 1.253 17 H -0.272 1.272 18 H -0.264 1.264 19 C 0.012 3.988 20 C -0.068 4.068 21 C -0.123 4.123 22 C -0.094 4.094 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.094 0.906 34 H 0.283 0.717 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 0.720 -2.721 3.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.122 4.122 4 C -0.129 4.129 5 N -0.267 5.267 6 C -0.053 4.053 7 C -0.028 4.028 8 C -0.182 4.182 9 C -0.181 4.181 10 N 0.018 4.982 11 C -0.516 4.516 12 H 0.132 0.868 13 C -0.194 4.194 14 N -0.488 5.488 15 Si 0.819 3.181 16 H -0.176 1.176 17 H -0.197 1.197 18 H -0.188 1.188 19 C -0.103 4.103 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.150 4.150 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.143 0.857 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.274 1.308 -2.600 3.693 hybrid contribution 0.929 -1.547 0.309 1.831 sum -1.345 -0.240 -2.291 2.667 Atomic orbital electron populations 1.20737 0.88330 1.03493 1.02655 1.19670 0.97383 0.90981 1.02942 1.20050 0.89389 0.98301 1.04491 1.19452 0.95007 0.89291 1.09113 1.70063 0.97835 1.31254 1.27558 1.24083 0.96289 0.81471 1.03494 1.19647 0.89121 0.95649 0.98391 1.21669 1.03098 0.98786 0.94607 1.21637 1.03023 0.98485 0.94938 1.41445 1.04254 1.05442 1.47069 1.19976 0.96238 0.99193 1.36222 0.86840 1.26516 0.98810 1.01141 0.92900 1.70113 1.33735 1.28812 1.16100 0.84929 0.78322 0.75976 0.78895 1.17648 1.19708 1.18848 1.19164 0.84907 0.96626 1.09569 1.19960 0.93216 0.94861 1.00867 1.19749 0.91902 0.96571 1.04356 1.20688 0.99855 0.92272 1.02220 0.90890 0.91025 0.89779 0.85709 0.90018 0.92660 0.88865 0.94154 0.92689 0.95099 0.88756 0.90704 0.88308 0.91442 0.88948 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.60 9.58 71.24 0.68 -1.92 16 2 C -0.11 -4.22 5.88 -19.87 -0.12 -4.33 16 3 C -0.10 -4.62 9.74 22.50 0.22 -4.40 16 4 C -0.01 -0.31 7.23 39.42 0.28 -0.03 16 5 N -0.54 -28.64 11.26 -179.56 -2.02 -30.66 16 6 C 0.21 10.60 6.34 137.76 0.87 11.48 16 7 C -0.01 -0.31 3.25 -11.54 -0.04 -0.34 16 8 C -0.12 -4.01 9.17 71.98 0.66 -3.35 16 9 C -0.12 -4.24 9.17 71.98 0.66 -3.58 16 10 N -0.31 -17.28 2.85 -333.13 -0.95 -18.23 16 11 C -0.39 -20.72 9.28 84.00 0.78 -19.94 16 12 H 0.11 5.61 7.37 -2.91 -0.02 5.59 16 13 C 0.02 0.79 4.57 84.92 0.39 1.17 16 14 N -0.86 -46.43 10.59 21.65 0.23 -46.20 16 15 Si 1.00 38.78 29.60 68.60 2.03 40.81 16 16 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 17 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 19 C 0.01 0.67 6.15 38.78 0.24 0.90 16 20 C -0.07 -3.51 8.21 22.32 0.18 -3.32 16 21 C -0.12 -5.20 5.88 -19.81 -0.12 -5.31 16 22 C -0.09 -2.96 9.58 71.24 0.68 -2.28 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 25 H 0.08 1.91 5.91 -2.39 -0.01 1.90 16 26 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 27 H 0.08 3.21 6.98 -2.39 -0.02 3.19 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.28 14.21 8.32 -92.70 -0.77 13.43 16 35 H 0.10 5.26 6.30 -2.91 -0.02 5.24 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 2.29 5.91 -2.39 -0.01 2.27 16 38 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 Total: -1.00 -67.93 309.79 5.72 -62.21 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 1.05 Total: 27.34 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 5.38 Total: -35.26 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -2.74 Total: -95.10 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -67.93 5.72 -62.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031943398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.327 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds