Wall clock time and date at job start Mon Mar 30 2020 08:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46944 * 2 1 4 4 C 1.50702 * 109.46931 * 119.99388 * 2 1 3 5 5 H 1.08001 * 119.99401 * 120.00546 * 4 2 1 6 6 C 1.37873 * 120.00461 * 300.00197 * 4 2 1 7 7 N 1.31515 * 119.99931 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46845 * 60.00203 * 8 6 4 10 10 H 1.48498 * 109.47216 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47300 * 300.00464 * 8 6 4 12 12 N 1.46498 * 109.47224 * 239.99697 * 2 1 3 13 13 C 1.39741 * 119.99634 * 85.00289 * 12 2 1 14 14 C 1.38925 * 120.04991 * 180.02562 * 13 12 2 15 15 C 1.38097 * 119.95921 * 180.02562 * 14 13 12 16 16 C 1.38382 * 120.07725 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 119.94580 * 180.02562 * 16 15 14 18 18 C 1.38470 * 120.10680 * 0.02562 * 16 15 14 19 19 Cl 1.73609 * 119.98020 * 179.97438 * 18 16 15 20 20 C 1.38237 * 120.04225 * 359.97438 * 18 16 15 21 21 H 1.08998 * 109.46829 * 60.00690 * 1 2 3 22 22 H 1.09001 * 109.46524 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47338 * 300.00028 * 1 2 3 24 24 H 0.97000 * 120.00345 * 180.02562 * 7 6 4 25 25 H 0.96994 * 120.00282 * 264.99881 * 12 2 1 26 26 H 1.07997 * 120.02548 * 359.73900 * 14 13 12 27 27 H 1.08001 * 119.96414 * 180.02562 * 15 14 13 28 28 H 1.07995 * 120.04204 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.8064 -1.1206 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8259 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 2.1519 0.0065 -2.3998 14 6 2.6144 -0.6475 -3.5349 15 6 2.7461 0.0434 -4.7233 16 6 2.4174 1.3862 -4.7850 17 17 2.5837 2.2512 -6.2809 18 6 1.9562 2.0410 -3.6555 19 17 1.5454 3.7258 -3.7364 20 6 1.8225 1.3539 -2.4634 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7087 1.1615 3.4844 25 1 2.2491 -1.6318 -1.1525 26 1 2.8752 -1.6944 -3.4869 27 1 3.1052 -0.4650 -5.6059 28 1 1.4624 1.8645 -1.5825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032015713.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:39 Heat of formation + Delta-G solvation = 1.594681 kcal Electronic energy + Delta-G solvation = -14620.949391 eV Core-core repulsion = 11916.003996 eV Total energy + Delta-G solvation = -2704.945394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.22886 -36.62647 -36.15904 -35.31159 -32.80611 -30.58421 -29.84334 -27.33029 -25.34217 -22.84803 -21.94263 -20.20168 -17.69957 -16.64301 -15.79494 -15.50892 -14.71651 -14.32001 -13.84298 -13.56186 -13.54954 -12.50104 -12.41626 -12.12735 -11.59253 -11.53120 -11.42952 -11.09390 -10.97267 -10.80161 -10.64645 -10.55555 -10.35949 -10.24396 -9.34543 -9.15150 -8.59652 -8.57263 -6.81829 -6.25400 -4.34715 1.45180 1.68292 2.22511 2.61123 3.18690 3.24452 3.25619 3.96273 4.11852 4.37026 5.00723 5.07811 5.39671 5.61230 5.67629 5.99775 6.24367 6.44818 6.53559 6.58514 6.80713 6.83521 6.93762 7.26776 7.54783 7.69810 7.92075 8.12920 8.48080 8.74386 9.32943 10.80497 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.005019 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.389968 B = 5576.947168 C = 6069.633026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.263 3.737 3 H 0.043 0.957 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.255 3.745 14 C -0.205 4.205 15 C -0.048 4.048 16 C -0.116 4.116 17 Cl -0.081 7.081 18 C 0.028 3.972 19 Cl -0.066 7.066 20 C -0.187 4.187 21 H 0.014 0.986 22 H 0.030 0.970 23 H 0.092 0.908 24 H 0.267 0.733 25 H 0.395 0.605 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 0.164 -11.841 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.161 3.839 3 H 0.061 0.939 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.332 5.332 13 C 0.142 3.858 14 C -0.229 4.229 15 C -0.067 4.067 16 C -0.146 4.146 17 Cl -0.052 7.052 18 C -0.001 4.001 19 Cl -0.037 7.037 20 C -0.211 4.211 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.229 0.771 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.614 0.607 -11.565 11.693 hybrid contribution 0.335 -0.578 0.782 1.028 sum 1.949 0.030 -10.784 10.959 Atomic orbital electron populations 1.22198 0.98431 0.99772 1.00861 1.18848 0.90945 0.93560 0.80553 0.93948 1.21121 1.32636 1.13458 0.90145 0.92053 1.24868 0.94652 0.94935 0.99107 1.69855 1.35647 1.22395 1.24264 0.86479 0.79231 0.79627 0.81648 1.20099 1.21035 1.20120 1.45752 1.67772 1.12293 1.07373 1.17935 0.90000 0.90743 0.87134 1.20573 1.09997 1.00519 0.91829 1.20551 0.97140 0.91123 0.97913 1.20190 1.14136 0.93438 0.86821 1.98314 1.96912 1.77103 1.32881 1.20404 1.00531 0.85424 0.93693 1.98354 1.91984 1.14730 1.98588 1.20605 1.09599 0.93628 0.97307 0.96657 0.95049 0.88952 0.92351 0.77126 0.85365 0.85047 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.21 37.16 0.34 -3.14 15 2 C 0.26 6.04 2.25 -69.08 -0.16 5.88 15 3 H 0.04 1.07 6.48 -51.93 -0.34 0.73 15 4 C -0.54 -13.47 8.73 -34.44 -0.30 -13.77 15 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 15 7 N -0.88 -23.56 11.32 55.43 0.63 -22.93 15 8 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 15 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 11 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 12 N -0.71 -13.62 5.24 -53.28 -0.28 -13.90 15 13 C 0.25 4.47 6.64 -83.77 -0.56 3.92 15 14 C -0.21 -3.02 9.89 -39.38 -0.39 -3.41 15 15 C -0.05 -0.66 9.82 -39.58 -0.39 -1.05 15 16 C -0.12 -1.77 6.32 -39.44 -0.25 -2.02 15 17 Cl -0.08 -1.12 27.95 -51.86 -1.45 -2.57 15 18 C 0.03 0.46 6.32 -39.50 -0.25 0.21 15 19 Cl -0.07 -1.03 27.95 -51.86 -1.45 -2.48 15 20 C -0.19 -3.40 8.63 -39.35 -0.34 -3.74 15 21 H 0.01 0.31 7.71 -51.93 -0.40 -0.09 15 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.09 2.30 6.07 -51.93 -0.32 1.98 15 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 25 H 0.39 6.90 8.55 -40.82 -0.35 6.56 15 26 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.15 2.85 6.12 -52.49 -0.32 2.53 15 LS Contribution 271.68 15.07 4.09 4.09 Total: -1.00 -25.36 271.68 -8.39 -33.75 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -2.53 Total: 4.53 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.38 Total: -15.47 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.35 Total: -36.83 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -2.90 Total: -5.04 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.36 -8.39 -33.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032015713.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.346 kcal (2) G-P(sol) polarization free energy of solvation -25.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds