Wall clock time and date at job start Mon Mar 30 2020 08:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46944 * 2 1 4 4 C 1.50702 * 109.46931 * 119.99388 * 2 1 3 5 5 H 1.08001 * 119.99401 * 120.00546 * 4 2 1 6 6 C 1.37873 * 120.00461 * 300.00197 * 4 2 1 7 7 N 1.31515 * 119.99931 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46845 * 60.00203 * 8 6 4 10 10 H 1.48498 * 109.47216 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47300 * 300.00464 * 8 6 4 12 12 N 1.46498 * 109.47224 * 239.99697 * 2 1 3 13 13 C 1.39741 * 119.99634 * 85.00289 * 12 2 1 14 14 C 1.38925 * 120.04991 * 180.02562 * 13 12 2 15 15 C 1.38097 * 119.95921 * 180.02562 * 14 13 12 16 16 C 1.38382 * 120.07725 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 119.94580 * 180.02562 * 16 15 14 18 18 C 1.38470 * 120.10680 * 0.02562 * 16 15 14 19 19 Cl 1.73609 * 119.98020 * 179.97438 * 18 16 15 20 20 C 1.38237 * 120.04225 * 359.97438 * 18 16 15 21 21 H 1.08998 * 109.46829 * 60.00690 * 1 2 3 22 22 H 1.09001 * 109.46524 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47338 * 300.00028 * 1 2 3 24 24 H 0.97000 * 120.00345 * 180.02562 * 7 6 4 25 25 H 0.96994 * 120.00282 * 264.99881 * 12 2 1 26 26 H 1.07997 * 120.02548 * 359.73900 * 14 13 12 27 27 H 1.08001 * 119.96414 * 180.02562 * 15 14 13 28 28 H 1.07995 * 120.04204 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0081 9 1 3.8064 -1.1206 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8259 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 2.1519 0.0065 -2.3998 14 6 2.6144 -0.6475 -3.5349 15 6 2.7461 0.0434 -4.7233 16 6 2.4174 1.3862 -4.7850 17 17 2.5837 2.2512 -6.2809 18 6 1.9562 2.0410 -3.6555 19 17 1.5454 3.7258 -3.7364 20 6 1.8225 1.3539 -2.4634 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7087 1.1615 3.4844 25 1 2.2491 -1.6318 -1.1525 26 1 2.8752 -1.6944 -3.4869 27 1 3.1052 -0.4650 -5.6059 28 1 1.4624 1.8645 -1.5825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032015713.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:39 Heat of formation + Delta-G solvation = -11.037817 kcal Electronic energy + Delta-G solvation = -14621.497177 eV Core-core repulsion = 11916.003996 eV Total energy + Delta-G solvation = -2705.493181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53931 -37.98810 -37.38738 -36.78030 -34.55225 -31.91025 -31.42424 -28.81072 -27.26709 -24.21392 -23.33115 -21.81540 -19.22904 -18.16183 -17.25146 -17.09331 -16.29948 -15.72443 -15.27117 -15.01377 -14.84533 -14.17410 -14.00730 -13.45938 -13.26643 -12.91333 -12.78038 -12.76597 -12.60431 -12.33005 -12.20570 -12.09948 -11.85714 -11.69910 -11.10319 -10.71991 -10.44988 -9.83624 -8.26631 -8.15685 -6.34836 0.18877 0.41892 0.97561 1.38269 1.44331 1.44529 1.52399 2.36242 2.69282 2.82293 3.11766 3.81388 4.22445 4.31528 4.42969 4.70744 4.74821 4.96658 4.98214 5.09132 5.22840 5.27265 5.39816 5.57143 5.69490 5.86008 6.08192 6.45150 6.75732 7.11839 7.37421 8.85847 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.005019 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.389968 B = 5576.947168 C = 6069.633026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.012 0.988 4 C -0.549 4.549 5 H 0.066 0.934 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.717 5.717 13 C 0.235 3.765 14 C -0.189 4.189 15 C -0.039 4.039 16 C -0.115 4.115 17 Cl -0.065 7.065 18 C 0.016 3.984 19 Cl -0.063 7.063 20 C -0.206 4.206 21 H 0.023 0.977 22 H 0.032 0.968 23 H 0.066 0.934 24 H 0.266 0.734 25 H 0.403 0.597 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -1.208 -13.318 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.030 0.970 4 C -0.587 4.587 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.193 1.193 12 N -0.340 5.340 13 C 0.126 3.874 14 C -0.212 4.212 15 C -0.058 4.058 16 C -0.145 4.145 17 Cl -0.036 7.036 18 C -0.012 4.012 19 Cl -0.034 7.034 20 C -0.231 4.231 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.238 0.762 26 H 0.176 0.824 27 H 0.186 0.814 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.540 -0.766 -13.089 13.355 hybrid contribution 0.073 -0.086 1.076 1.082 sum 2.613 -0.852 -12.013 12.324 Atomic orbital electron populations 1.22010 0.98532 0.99452 0.99956 1.18426 0.90783 0.92154 0.81704 0.97036 1.21500 1.32453 1.13587 0.91150 0.91601 1.25658 0.94896 0.95592 1.01935 1.69990 1.36776 1.23698 1.24665 0.85516 0.78651 0.78725 0.78183 1.19758 1.21126 1.19324 1.45337 1.69225 1.12524 1.06913 1.18139 0.91179 0.90638 0.87487 1.20893 1.07830 1.01804 0.90704 1.20965 0.95643 0.90401 0.98794 1.20436 1.12927 0.94192 0.86952 1.98325 1.96757 1.76942 1.31573 1.20484 1.01126 0.85721 0.93856 1.98349 1.92006 1.14504 1.98566 1.20481 1.11098 0.94334 0.97153 0.95808 0.94852 0.91519 0.92520 0.76159 0.82376 0.81398 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 9.21 71.98 0.66 -5.86 15 2 C 0.27 12.83 2.25 44.25 0.10 12.93 15 3 H 0.01 0.63 6.48 -2.38 -0.02 0.61 15 4 C -0.55 -27.81 8.73 25.60 0.22 -27.58 15 5 H 0.07 3.19 7.74 -2.91 -0.02 3.17 15 6 C 0.02 1.02 5.30 84.65 0.45 1.47 15 7 N -0.91 -49.84 11.32 21.45 0.24 -49.59 15 8 Si 0.96 40.98 29.54 68.60 2.03 43.01 15 9 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 10 H -0.29 -12.08 7.11 99.48 0.71 -11.37 15 11 H -0.27 -11.00 7.11 99.48 0.71 -10.30 15 12 N -0.72 -27.21 5.24 -322.47 -1.69 -28.90 15 13 C 0.24 8.07 6.64 38.19 0.25 8.32 15 14 C -0.19 -4.99 9.89 22.40 0.22 -4.77 15 15 C -0.04 -0.93 9.82 22.27 0.22 -0.71 15 16 C -0.12 -3.26 6.32 22.36 0.14 -3.12 15 17 Cl -0.06 -1.62 27.95 -2.72 -0.08 -1.70 15 18 C 0.02 0.53 6.32 22.32 0.14 0.68 15 19 Cl -0.06 -1.96 27.95 -2.72 -0.08 -2.04 15 20 C -0.21 -7.56 8.63 22.42 0.19 -7.37 15 21 H 0.02 1.01 7.71 -2.39 -0.02 0.99 15 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.07 3.44 6.07 -2.39 -0.01 3.42 15 24 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 25 H 0.40 13.65 8.55 -92.71 -0.79 12.86 15 26 H 0.16 3.23 8.06 -2.91 -0.02 3.21 15 27 H 0.17 2.87 8.06 -2.91 -0.02 2.84 15 28 H 0.12 4.95 6.12 -2.91 -0.02 4.93 15 Total: -1.00 -54.40 271.68 3.43 -50.97 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.40 Total: 14.27 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 2.60 Total: -26.01 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -1.45 Total: -78.49 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -0.15 Total: -3.74 kcal Total: -54.40 3.43 -50.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032015713.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.930 kcal (2) G-P(sol) polarization free energy of solvation -54.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds