Wall clock time and date at job start Mon Mar 30 2020 08:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47151 * 2 1 4 4 C 1.50698 * 109.47252 * 239.99695 * 2 1 3 5 5 H 1.07997 * 120.00131 * 245.41913 * 4 2 1 6 6 C 1.37874 * 119.99865 * 65.15065 * 4 2 1 7 7 N 1.31517 * 119.99997 * 355.39631 * 6 4 2 8 8 Si 1.86800 * 120.00107 * 175.40740 * 6 4 2 9 9 H 1.48494 * 109.47227 * 94.99534 * 8 6 4 10 10 H 1.48506 * 109.47110 * 214.99499 * 8 6 4 11 11 H 1.48502 * 109.46845 * 334.99329 * 8 6 4 12 12 N 1.46503 * 109.46681 * 119.99836 * 2 1 3 13 13 C 1.39745 * 120.00114 * 274.99932 * 12 2 1 14 14 C 1.38866 * 120.07311 * 0.02562 * 13 12 2 15 15 C 1.38225 * 119.92760 * 179.97438 * 14 13 12 16 16 Cl 1.73605 * 119.96556 * 180.02562 * 15 14 13 17 17 C 1.38409 * 120.06700 * 0.02562 * 15 14 13 18 18 C 1.38249 * 120.14495 * 359.97438 * 17 15 14 19 19 C 1.38219 * 120.07390 * 359.74291 * 18 17 15 20 20 Cl 1.73602 * 120.03708 * 180.25878 * 19 18 17 21 21 H 1.09005 * 109.46603 * 54.94418 * 1 2 3 22 22 H 1.08996 * 109.47106 * 174.93950 * 1 2 3 23 23 H 1.09003 * 109.47192 * 294.94950 * 1 2 3 24 24 H 0.97001 * 120.00016 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00214 * 95.00542 * 12 2 1 26 26 H 1.07998 * 120.03435 * 359.94828 * 14 13 12 27 27 H 1.08005 * 119.92420 * 180.02562 * 17 15 14 28 28 H 1.07997 * 119.96483 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5792 -1.6367 -1.1337 6 6 1.7891 -0.1808 -2.4799 7 7 1.0422 0.8946 -2.6042 8 14 2.5201 -0.9907 -3.9962 9 1 1.5264 -1.9225 -4.5873 10 1 2.8744 0.0523 -4.9923 11 1 3.7406 -1.7455 -3.6144 12 7 2.0183 -0.6906 1.1962 13 6 2.1517 0.0065 2.4000 14 6 1.8214 1.3538 2.4642 15 6 1.9541 2.0403 3.6565 16 17 1.5408 3.7245 3.7380 17 6 2.4160 1.3864 4.7856 18 6 2.7456 0.0451 4.7249 19 6 2.6097 -0.6485 3.5371 20 17 3.0176 -2.3343 3.4638 21 1 -0.3633 0.5903 -0.8413 22 1 -0.3633 -1.0236 -0.0906 23 1 -0.3634 0.4335 0.9318 24 1 0.8708 1.2670 -3.4833 25 1 2.2490 -1.6318 1.1527 26 1 1.4618 1.8648 1.5833 27 1 2.5184 1.9249 5.7161 28 1 3.1054 -0.4623 5.6078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032015716.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:45 Heat of formation + Delta-G solvation = -12.069382 kcal Electronic energy + Delta-G solvation = -14758.485222 eV Core-core repulsion = 12052.947310 eV Total energy + Delta-G solvation = -2705.537913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57596 -37.83269 -37.44701 -36.87751 -34.64930 -31.74384 -31.45934 -28.95043 -27.27973 -24.19853 -23.30849 -21.80750 -19.32334 -18.10995 -17.30611 -17.05818 -16.31749 -15.70127 -15.30941 -15.03530 -14.95165 -14.20387 -13.85280 -13.36843 -13.25217 -13.14886 -12.95108 -12.81790 -12.60366 -12.29656 -12.12522 -11.93826 -11.92088 -11.69138 -11.10183 -10.99187 -10.52963 -9.65185 -8.32189 -8.19280 -6.35682 0.09574 0.53501 1.08368 1.31299 1.40888 1.42923 1.52927 2.35021 2.65582 2.76139 3.09838 3.80571 4.21801 4.31680 4.41107 4.69698 4.73790 4.93752 4.99280 5.06006 5.21580 5.30328 5.38118 5.57954 5.69628 5.79476 6.03735 6.39998 6.72816 7.01666 7.35449 8.84631 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.006809 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.719817 B = 4111.074225 C = 5285.566143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.274 3.726 3 H 0.018 0.982 4 C -0.549 4.549 5 H 0.060 0.940 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.719 5.719 13 C 0.236 3.764 14 C -0.206 4.206 15 C 0.018 3.982 16 Cl -0.067 7.067 17 C -0.170 4.170 18 C -0.039 4.039 19 C -0.135 4.135 20 Cl -0.070 7.070 21 H 0.062 0.938 22 H 0.030 0.970 23 H 0.026 0.974 24 H 0.266 0.734 25 H 0.398 0.602 26 H 0.121 0.879 27 H 0.164 0.836 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -0.243 13.748 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.036 0.964 4 C -0.587 4.587 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.342 5.342 13 C 0.125 3.875 14 C -0.230 4.230 15 C -0.009 4.009 16 Cl -0.038 7.038 17 C -0.192 4.192 18 C -0.058 4.058 19 C -0.167 4.167 20 Cl -0.042 7.042 21 H 0.081 0.919 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.233 0.767 26 H 0.139 0.861 27 H 0.181 0.819 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.340 -0.025 13.376 13.579 hybrid contribution 0.182 -0.552 -1.305 1.429 sum 2.522 -0.577 12.070 12.345 Atomic orbital electron populations 1.21979 0.98357 0.99713 0.99321 1.18477 0.90836 0.92282 0.81383 0.96431 1.21459 1.36536 1.09317 0.91418 0.92208 1.25618 0.94942 0.95539 1.01688 1.70013 1.37379 1.22698 1.24766 0.85471 0.78811 0.78141 0.78781 1.20059 1.20728 1.19386 1.45476 1.69167 1.12533 1.07071 1.17744 0.92293 0.91056 0.86382 1.20484 1.10991 0.92979 0.98534 1.20785 0.99880 0.85401 0.94866 1.98352 1.92019 1.14913 1.98565 1.20911 1.05768 0.94335 0.98150 1.21005 0.95710 0.93140 0.95907 1.20547 1.14368 0.86473 0.95351 1.98317 1.92638 1.14768 1.98453 0.91916 0.95085 0.95460 0.92443 0.76658 0.86134 0.81864 0.81372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 9.19 71.98 0.66 -5.72 15 2 C 0.27 13.33 2.20 44.25 0.10 13.43 15 3 H 0.02 0.96 6.49 -2.39 -0.02 0.94 15 4 C -0.55 -28.90 8.67 25.60 0.22 -28.68 15 5 H 0.06 3.09 7.72 -2.91 -0.02 3.07 15 6 C 0.02 1.22 5.36 84.65 0.45 1.67 15 7 N -0.91 -50.15 11.58 21.45 0.25 -49.91 15 8 Si 0.96 41.99 29.54 68.60 2.03 44.02 15 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 11 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 12 N -0.72 -29.96 5.20 -322.40 -1.68 -31.64 15 13 C 0.24 8.71 6.64 38.21 0.25 8.97 15 14 C -0.21 -7.51 8.63 22.42 0.19 -7.32 15 15 C 0.02 0.55 6.32 22.31 0.14 0.69 15 16 Cl -0.07 -1.85 28.95 -2.72 -0.08 -1.93 15 17 C -0.17 -4.12 9.82 22.31 0.22 -3.90 15 18 C -0.04 -0.93 9.82 22.27 0.22 -0.71 15 19 C -0.14 -4.14 6.34 22.45 0.14 -4.00 15 20 Cl -0.07 -1.99 27.59 -2.72 -0.08 -2.07 15 21 H 0.06 3.24 6.45 -2.38 -0.02 3.23 15 22 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.03 1.17 7.81 -2.39 -0.02 1.15 15 24 H 0.27 13.94 8.31 -92.71 -0.77 13.17 15 25 H 0.40 15.97 7.20 -92.71 -0.67 15.31 15 26 H 0.12 4.97 6.21 -2.91 -0.02 4.95 15 27 H 0.16 2.88 8.06 -2.91 -0.02 2.86 15 28 H 0.17 2.88 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -54.95 271.62 3.57 -51.37 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.53 Total: 15.72 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 2.60 Total: -25.57 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.43 Total: -81.54 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -3.84 SS G_CDS: -0.15 Total: -4.00 kcal Total: -54.95 3.57 -51.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032015716.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal (2) G-P(sol) polarization free energy of solvation -54.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds