Wall clock time and date at job start Mon Mar 30 2020 08:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.39667 * 120.00506 * 275.00381 * 12 2 1 14 14 C 1.38898 * 120.05974 * 359.72343 * 13 12 2 15 15 C 1.38227 * 119.94073 * 179.76597 * 14 13 12 16 16 Cl 1.73600 * 119.97139 * 180.23004 * 15 14 13 17 17 C 1.38390 * 120.05857 * 0.48767 * 15 14 13 18 18 C 1.38385 * 120.12468 * 359.76479 * 17 15 14 19 19 Cl 1.73594 * 119.97162 * 179.97438 * 18 17 15 20 20 C 1.38232 * 120.05685 * 0.02562 * 18 17 15 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 26 26 H 1.07997 * 120.03105 * 359.97438 * 14 13 12 27 27 H 1.07994 * 119.93879 * 179.74348 * 17 15 14 28 28 H 1.08000 * 120.02402 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1517 0.0062 2.3993 14 6 1.8271 1.3553 2.4617 15 6 1.9554 2.0413 3.6549 16 17 1.5443 3.7260 3.7352 17 6 2.4164 1.3875 4.7842 18 6 2.7455 0.0448 4.7236 19 17 3.3240 -0.7712 6.1425 20 6 2.6150 -0.6471 3.5341 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 2.2490 -1.6317 1.1527 26 1 1.4716 1.8670 1.5796 27 1 2.5198 1.9264 5.7143 28 1 2.8724 -1.6950 3.4873 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032015718.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:50 Heat of formation + Delta-G solvation = 1.203465 kcal Electronic energy + Delta-G solvation = -14581.237347 eV Core-core repulsion = 11876.274988 eV Total energy + Delta-G solvation = -2704.962359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25317 -36.60340 -36.47219 -35.29837 -32.85493 -30.46651 -29.81598 -27.51500 -25.34675 -22.69594 -22.08234 -20.17803 -17.72527 -16.59766 -15.70367 -15.44784 -14.73032 -14.40837 -13.93509 -13.81361 -13.49666 -12.59056 -12.30296 -12.11964 -11.87242 -11.48601 -11.37064 -11.09694 -11.00038 -10.86991 -10.70458 -10.63848 -10.36502 -10.25332 -9.44354 -9.16554 -8.59848 -8.43978 -6.88529 -6.25105 -4.34202 1.37692 1.72164 2.03498 2.55692 3.19231 3.24810 3.26229 3.93868 4.11825 4.36356 5.07870 5.31511 5.41448 5.51237 5.70199 5.71830 6.40158 6.46754 6.50417 6.60013 6.77061 6.82971 6.93477 7.26802 7.55274 7.70158 7.92328 8.13322 8.48347 8.74809 9.33397 10.80833 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.023878 B = 0.005459 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.340258 B = 5127.449891 C = 6044.903075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.264 3.736 3 H 0.043 0.957 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.261 3.739 14 C -0.191 4.191 15 C 0.030 3.970 16 Cl -0.073 7.073 17 C -0.192 4.192 18 C 0.030 3.970 19 Cl -0.078 7.078 20 C -0.208 4.208 21 H 0.030 0.970 22 H 0.092 0.908 23 H 0.014 0.986 24 H 0.266 0.734 25 H 0.395 0.605 26 H 0.144 0.856 27 H 0.131 0.869 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 0.259 11.848 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.162 3.838 3 H 0.061 0.939 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.332 5.332 13 C 0.149 3.851 14 C -0.215 4.215 15 C 0.003 3.997 16 Cl -0.045 7.045 17 C -0.214 4.214 18 C 0.002 3.998 19 Cl -0.049 7.049 20 C -0.233 4.233 21 H 0.050 0.950 22 H 0.111 0.889 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.229 0.771 26 H 0.161 0.839 27 H 0.149 0.851 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.633 0.551 11.571 11.699 hybrid contribution 0.378 -0.729 -0.752 1.114 sum 2.011 -0.178 10.819 11.006 Atomic orbital electron populations 1.22199 0.98429 0.99777 1.00848 1.18846 0.90937 0.93558 0.80459 0.93925 1.21121 1.32613 1.13452 0.90121 0.92037 1.24866 0.94653 0.94935 0.99098 1.69851 1.35676 1.22414 1.24254 0.86481 0.79237 0.79637 0.81637 1.20117 1.21040 1.20097 1.45711 1.67970 1.12318 1.07216 1.17626 0.90148 0.90642 0.86703 1.20736 1.09276 0.93544 0.97935 1.20331 1.00078 0.84884 0.94442 1.98350 1.92132 1.15341 1.98627 1.20327 1.09373 0.93133 0.98561 1.20229 0.99927 0.92088 0.87507 1.98342 1.87384 1.79315 1.39897 1.20421 1.11066 1.00788 0.91009 0.95047 0.88941 0.96669 0.92358 0.77108 0.83877 0.85115 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.22 37.16 0.34 -3.14 15 2 C 0.26 6.07 2.26 -69.09 -0.16 5.92 15 3 H 0.04 1.07 6.47 -51.93 -0.34 0.74 15 4 C -0.53 -13.48 8.73 -34.44 -0.30 -13.78 15 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 15 7 N -0.88 -23.54 11.32 55.43 0.63 -22.91 15 8 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 15 9 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 12 N -0.71 -13.78 5.24 -53.30 -0.28 -14.06 15 13 C 0.26 4.66 6.64 -83.80 -0.56 4.10 15 14 C -0.19 -3.43 8.64 -39.34 -0.34 -3.77 15 15 C 0.03 0.49 6.32 -39.53 -0.25 0.24 15 16 Cl -0.07 -1.07 28.95 -51.86 -1.50 -2.57 15 17 C -0.19 -2.83 9.61 -39.47 -0.38 -3.21 15 18 C 0.03 0.44 6.32 -39.53 -0.25 0.20 15 19 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 15 20 C -0.21 -3.26 9.68 -39.34 -0.38 -3.64 15 21 H 0.03 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.09 2.30 6.07 -51.93 -0.32 1.98 15 23 H 0.01 0.30 7.75 -51.93 -0.40 -0.10 15 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 25 H 0.39 7.05 8.55 -40.82 -0.35 6.70 15 26 H 0.14 2.77 6.14 -52.49 -0.32 2.45 15 27 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 28 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 273.31 15.07 4.12 4.12 Total: -1.00 -24.88 273.31 -8.45 -33.33 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.53 Total: 5.03 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.36 Total: -15.43 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.35 Total: -36.97 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -3.00 Total: -5.08 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -24.88 -8.45 -33.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032015718.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.538 kcal (2) G-P(sol) polarization free energy of solvation -24.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds