Wall clock time and date at job start Mon Mar 30 2020 08:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.39667 * 120.00506 * 275.00381 * 12 2 1 14 14 C 1.38898 * 120.05974 * 359.72343 * 13 12 2 15 15 C 1.38227 * 119.94073 * 179.76597 * 14 13 12 16 16 Cl 1.73600 * 119.97139 * 180.23004 * 15 14 13 17 17 C 1.38390 * 120.05857 * 0.48767 * 15 14 13 18 18 C 1.38385 * 120.12468 * 359.76479 * 17 15 14 19 19 Cl 1.73594 * 119.97162 * 179.97438 * 18 17 15 20 20 C 1.38232 * 120.05685 * 0.02562 * 18 17 15 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 26 26 H 1.07997 * 120.03105 * 359.97438 * 14 13 12 27 27 H 1.07994 * 119.93879 * 179.74348 * 17 15 14 28 28 H 1.08000 * 120.02402 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1517 0.0062 2.3993 14 6 1.8271 1.3553 2.4617 15 6 1.9554 2.0413 3.6549 16 17 1.5443 3.7260 3.7352 17 6 2.4164 1.3875 4.7842 18 6 2.7455 0.0448 4.7236 19 17 3.3240 -0.7712 6.1425 20 6 2.6150 -0.6471 3.5341 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 2.2490 -1.6317 1.1527 26 1 1.4716 1.8670 1.5796 27 1 2.5198 1.9264 5.7143 28 1 2.8724 -1.6950 3.4873 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032015718.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:50 Heat of formation + Delta-G solvation = -10.739313 kcal Electronic energy + Delta-G solvation = -14581.755225 eV Core-core repulsion = 11876.274988 eV Total energy + Delta-G solvation = -2705.480237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58058 -37.92463 -37.67959 -36.73828 -34.60193 -31.93152 -31.27841 -29.02434 -27.27530 -24.09592 -23.47876 -21.80112 -19.25556 -18.17273 -17.23559 -16.93209 -16.30249 -15.82957 -15.32630 -15.15201 -14.93836 -14.33745 -13.93300 -13.27591 -13.21488 -13.18312 -12.91040 -12.77132 -12.57442 -12.25693 -12.18933 -12.07785 -11.91380 -11.86464 -11.10786 -10.79272 -10.49473 -9.68832 -8.34481 -8.17754 -6.34445 0.09421 0.43930 0.83525 1.34354 1.44423 1.44569 1.52421 2.36317 2.63705 2.79781 3.11805 4.11309 4.15872 4.18539 4.36023 4.43310 4.73150 4.96083 5.08071 5.14875 5.21241 5.22331 5.35028 5.52643 5.66130 5.85513 6.08061 6.44380 6.75294 7.08839 7.37447 8.85931 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.023878 B = 0.005459 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.340258 B = 5127.449891 C = 6044.903075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.015 0.985 4 C -0.549 4.549 5 H 0.064 0.936 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.718 5.718 13 C 0.244 3.756 14 C -0.208 4.208 15 C 0.026 3.974 16 Cl -0.062 7.062 17 C -0.179 4.179 18 C 0.028 3.972 19 Cl -0.053 7.053 20 C -0.199 4.199 21 H 0.031 0.969 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.266 0.734 25 H 0.402 0.598 26 H 0.120 0.880 27 H 0.153 0.847 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -0.549 13.237 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.170 3.830 3 H 0.032 0.968 4 C -0.587 4.587 5 H 0.083 0.917 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.341 5.341 13 C 0.134 3.866 14 C -0.232 4.232 15 C -0.002 4.002 16 Cl -0.033 7.033 17 C -0.201 4.201 18 C 0.000 4.000 19 Cl -0.024 7.024 20 C -0.223 4.223 21 H 0.050 0.950 22 H 0.086 0.914 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.237 0.763 26 H 0.138 0.862 27 H 0.171 0.829 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.380 -0.260 13.007 13.226 hybrid contribution 0.180 -0.431 -1.009 1.112 sum 2.560 -0.691 11.998 12.287 Atomic orbital electron populations 1.22012 0.98449 0.99428 1.00055 1.18445 0.90830 0.92223 0.81461 0.96760 1.21487 1.32475 1.13575 0.91167 0.91743 1.25638 0.94891 0.95594 1.01852 1.69980 1.36724 1.23643 1.24677 0.85528 0.78644 0.78710 0.78256 1.19431 1.21024 1.19800 1.45316 1.69416 1.12503 1.06843 1.17745 0.91303 0.90700 0.86814 1.20659 1.10555 0.93991 0.98029 1.20393 1.00061 0.85538 0.94206 1.98353 1.92034 1.14365 1.98577 1.20605 1.07470 0.93236 0.98792 1.20325 0.99293 0.92212 0.88134 1.98356 1.86965 1.78826 1.38279 1.20577 1.09685 1.01587 0.90415 0.94977 0.91399 0.95681 0.92485 0.76330 0.86166 0.82884 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.50 9.22 71.98 0.66 -5.84 15 2 C 0.27 12.89 2.26 44.24 0.10 12.99 15 3 H 0.01 0.77 6.47 -2.39 -0.02 0.75 15 4 C -0.55 -27.91 8.73 25.60 0.22 -27.69 15 5 H 0.06 3.16 7.74 -2.91 -0.02 3.13 15 6 C 0.02 1.08 5.30 84.66 0.45 1.53 15 7 N -0.91 -49.56 11.32 21.45 0.24 -49.31 15 8 Si 0.96 41.07 29.54 68.60 2.03 43.09 15 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 12 N -0.72 -27.83 5.24 -322.55 -1.69 -29.52 15 13 C 0.24 8.59 6.64 38.21 0.25 8.84 15 14 C -0.21 -7.50 8.64 22.43 0.19 -7.31 15 15 C 0.03 0.80 6.32 22.30 0.14 0.94 15 16 Cl -0.06 -1.75 28.95 -2.72 -0.08 -1.83 15 17 C -0.18 -4.86 9.61 22.34 0.21 -4.64 15 18 C 0.03 0.76 6.32 22.30 0.14 0.90 15 19 Cl -0.05 -1.20 28.95 -2.72 -0.08 -1.28 15 20 C -0.20 -5.83 9.68 22.43 0.22 -5.61 15 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.07 3.48 6.07 -2.39 -0.01 3.46 15 23 H 0.02 1.05 7.75 -2.38 -0.02 1.04 15 24 H 0.27 13.81 8.31 -92.71 -0.77 13.04 15 25 H 0.40 14.16 8.55 -92.70 -0.79 13.37 15 26 H 0.12 4.87 6.14 -2.91 -0.02 4.85 15 27 H 0.15 3.46 8.06 -2.91 -0.02 3.43 15 28 H 0.15 3.76 8.06 -2.91 -0.02 3.73 15 Total: -1.00 -52.39 273.31 3.42 -48.97 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.40 Total: 15.76 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 2.60 Total: -25.89 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.45 Total: -78.83 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.16 Total: -3.11 kcal Total: -52.39 3.42 -48.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032015718.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.231 kcal (2) G-P(sol) polarization free energy of solvation -52.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds