Wall clock time and date at job start Mon Mar 30 2020 07:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47091 * 2 1 4 4 H 1.09001 * 109.46969 * 305.55089 * 3 2 1 5 5 C 1.50692 * 109.47577 * 65.55457 * 3 2 1 6 6 H 1.08009 * 120.00275 * 60.04445 * 5 3 2 7 7 C 1.37878 * 120.00501 * 240.04795 * 5 3 2 8 8 N 1.31513 * 120.00561 * 173.51558 * 7 5 3 9 9 Si 1.86806 * 119.99554 * 353.51914 * 7 5 3 10 10 H 1.48499 * 109.46917 * 85.49847 * 9 7 5 11 11 H 1.48497 * 109.46763 * 205.49591 * 9 7 5 12 12 H 1.48498 * 109.46929 * 325.49594 * 9 7 5 13 13 N 1.46502 * 109.47305 * 185.55894 * 3 2 1 14 14 C 1.36040 * 126.34712 * 300.02017 * 13 3 2 15 15 N 1.30106 * 110.10228 * 179.97438 * 14 13 3 16 16 C 1.35787 * 109.64005 * 0.02562 * 15 14 13 17 17 C 1.39746 * 133.59604 * 180.32322 * 16 15 14 18 18 C 1.36595 * 119.88411 * 180.18681 * 17 16 15 19 19 C 1.50704 * 119.66629 * 179.73307 * 18 17 16 20 20 C 1.38777 * 120.67068 * 359.44874 * 18 17 16 21 21 C 1.50693 * 119.77707 * 180.29931 * 20 18 17 22 22 C 1.37860 * 120.44769 * 0.28170 * 20 18 17 23 23 C 1.38047 * 126.35349 * 119.99889 * 13 3 2 24 24 H 1.08991 * 109.47551 * 294.82928 * 1 2 3 25 25 H 1.09001 * 109.46807 * 54.83115 * 1 2 3 26 26 H 1.09006 * 109.47035 * 174.82421 * 1 2 3 27 27 H 1.09001 * 109.47564 * 239.99752 * 2 1 3 28 28 H 1.09003 * 109.47395 * 119.99253 * 2 1 3 29 29 H 0.96998 * 120.00267 * 180.02562 * 8 7 5 30 30 H 1.08006 * 124.95000 * 0.02562 * 14 13 3 31 31 H 1.07999 * 120.05634 * 359.92911 * 17 16 15 32 32 H 1.09001 * 109.46442 * 269.72378 * 19 18 17 33 33 H 1.08996 * 109.47233 * 149.72748 * 19 18 17 34 34 H 1.09002 * 109.46889 * 29.72239 * 19 18 17 35 35 H 1.08999 * 109.47139 * 90.00374 * 21 20 18 36 36 H 1.09003 * 109.47520 * 210.00277 * 21 20 18 37 37 H 1.09003 * 109.46987 * 330.00145 * 21 20 18 38 38 H 1.08004 * 120.15008 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 1.6531 2.1122 1.2933 6 1 2.0025 1.7126 2.2340 7 6 0.8531 3.2349 1.2761 8 7 0.4105 3.7446 2.4048 9 14 0.3976 4.0322 -0.3508 10 1 -0.7992 3.3577 -0.9146 11 1 0.0979 5.4698 -0.1306 12 1 1.5321 3.9027 -1.3002 13 7 3.4988 1.4447 -0.1338 14 6 4.3876 0.8674 0.7191 15 7 5.6029 1.0610 0.2970 16 6 5.5768 1.7770 -0.8565 17 6 6.5687 2.2497 -1.7199 18 6 6.2201 2.9640 -2.8308 19 6 7.2942 3.4766 -3.7554 20 6 4.8867 3.2175 -3.1198 21 6 4.5245 4.0019 -4.3545 22 6 3.8910 2.7562 -2.2853 23 6 4.2266 2.0326 -1.1489 24 1 -0.3634 0.4315 0.9326 25 1 -0.3633 0.5919 -0.8401 26 1 -0.3633 -1.0235 -0.0927 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 -0.1526 4.5343 2.3925 30 1 4.1228 0.3264 1.6156 31 1 7.6093 2.0542 -1.5070 32 1 7.6018 4.4729 -3.4377 33 1 6.9058 3.5235 -4.7727 34 1 8.1516 2.8043 -3.7243 35 1 4.3883 3.3182 -5.1924 36 1 3.5988 4.5497 -4.1784 37 1 5.3245 4.7053 -4.5857 38 1 2.8548 2.9566 -2.5147 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036986743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:59 Heat of formation + Delta-G solvation = 47.885268 kcal Electronic energy + Delta-G solvation = -19354.922163 eV Core-core repulsion = 16583.092615 eV Total energy + Delta-G solvation = -2771.829548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.37634 -37.80191 -35.54012 -32.52168 -32.06276 -31.24709 -30.75888 -27.48325 -26.31443 -25.65817 -23.76620 -21.89896 -21.28753 -20.29967 -19.13532 -17.32615 -16.48788 -15.85386 -15.05748 -14.75102 -14.28120 -13.98024 -13.80581 -13.59826 -13.40281 -13.01615 -12.92801 -12.64975 -12.31350 -12.04899 -11.88552 -11.56091 -11.40613 -11.18366 -11.16892 -10.94290 -10.60707 -10.51451 -10.23156 -10.03161 -9.76748 -9.29753 -9.13102 -8.96008 -7.49862 -7.32587 -6.48358 -4.55491 1.54456 2.08413 3.02094 3.10605 3.13953 3.52283 3.64211 4.06368 4.37653 4.84369 4.93293 5.14419 5.25664 5.40674 5.52516 5.59647 5.61679 5.74868 5.77397 5.82263 5.92733 5.95797 5.99178 6.02136 6.03342 6.18718 6.31108 6.39544 6.42285 6.53296 6.63490 6.78144 6.93343 7.05123 7.12936 7.18275 7.31836 7.48064 8.01169 8.12974 8.55358 8.66073 9.10165 10.62213 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.007740 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.279209 B = 3616.642820 C = 4189.763373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.218 3.782 4 H 0.061 0.939 5 C -0.523 4.523 6 H 0.084 0.916 7 C 0.089 3.911 8 N -0.872 5.872 9 Si 0.863 3.137 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.257 1.257 13 N -0.457 5.457 14 C 0.274 3.726 15 N -0.526 5.526 16 C 0.040 3.960 17 C -0.070 4.070 18 C -0.107 4.107 19 C -0.104 4.104 20 C -0.090 4.090 21 C -0.107 4.107 22 C -0.101 4.101 23 C 0.044 3.956 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.272 0.728 30 H 0.202 0.798 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -2.098 -10.840 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.120 3.880 4 H 0.079 0.921 5 C -0.561 4.561 6 H 0.102 0.898 7 C -0.119 4.119 8 N -0.506 5.506 9 Si 0.690 3.310 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.182 1.182 13 N -0.142 5.142 14 C -0.012 4.012 15 N -0.247 5.247 16 C -0.080 4.080 17 C -0.090 4.090 18 C -0.110 4.110 19 C -0.161 4.161 20 C -0.092 4.092 21 C -0.163 4.163 22 C -0.122 4.122 23 C -0.068 4.068 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.218 0.782 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.553 -2.232 -10.313 11.924 hybrid contribution -1.211 0.864 -0.837 1.707 sum 4.342 -1.368 -11.150 12.043 Atomic orbital electron populations 1.21603 0.95048 0.99857 1.02965 1.21775 0.96741 0.96700 1.00295 1.19892 0.73781 0.95063 0.99291 0.92113 1.20993 1.31535 1.12128 0.91492 0.89771 1.25072 0.94617 0.95708 0.96460 1.69857 1.32376 1.22140 1.26199 0.87067 0.79704 0.79662 0.84589 1.19349 1.20685 1.18232 1.47236 1.09391 1.40213 1.17320 1.25001 0.83669 0.96430 0.96137 1.70423 1.21505 1.21102 1.11667 1.19083 0.91747 1.01944 0.95276 1.19658 0.97488 0.98635 0.93170 1.19020 0.93705 1.01360 0.96909 1.20696 0.96610 1.00696 0.98064 1.19270 0.92142 1.00681 0.97111 1.20716 1.01663 0.98938 0.95005 1.19874 0.99056 0.99939 0.93308 1.19046 0.92607 1.01814 0.93371 0.90739 0.93877 0.93818 0.94171 0.91920 0.91808 0.78189 0.86316 0.91847 0.91804 0.92073 0.91703 0.92096 0.91534 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.65 37.15 0.36 -2.05 16 2 C -0.12 -2.17 5.38 -26.73 -0.14 -2.31 16 3 C 0.22 4.75 2.42 -69.08 -0.17 4.58 16 4 H 0.06 1.36 4.21 -51.93 -0.22 1.14 16 5 C -0.52 -13.19 7.93 -34.44 -0.27 -13.46 16 6 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 7 C 0.09 2.33 5.47 -17.82 -0.10 2.24 16 8 N -0.87 -24.40 13.96 55.43 0.77 -23.63 16 9 Si 0.86 19.72 26.99 -169.99 -4.59 15.13 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -5.73 5.30 56.52 0.30 -5.43 16 13 N -0.46 -9.97 2.66 -109.94 -0.29 -10.26 16 14 C 0.27 5.66 11.74 -89.78 -1.05 4.60 16 15 N -0.53 -11.35 11.27 -12.05 -0.14 -11.49 16 16 C 0.04 0.85 7.23 -84.70 -0.61 0.23 16 17 C -0.07 -1.26 9.66 -39.61 -0.38 -1.64 16 18 C -0.11 -1.71 5.84 -105.01 -0.61 -2.33 16 19 C -0.10 -1.21 9.16 36.01 0.33 -0.88 16 20 C -0.09 -1.50 5.88 -104.56 -0.62 -2.12 16 21 C -0.11 -1.36 9.17 36.00 0.33 -1.03 16 22 C -0.10 -1.99 9.48 -39.50 -0.37 -2.36 16 23 C 0.04 0.96 6.87 -83.99 -0.58 0.38 16 24 H 0.07 1.45 7.57 -51.93 -0.39 1.05 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.20 3.54 8.06 -52.48 -0.42 3.12 16 31 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 34 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.07 0.73 6.66 -51.93 -0.35 0.38 16 38 H 0.12 2.24 6.39 -52.48 -0.34 1.91 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -28.99 309.21 -8.99 -37.99 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.52 Total: 3.74 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -3.89 Total: -16.14 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.35 Total: -45.38 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.59 Total: 15.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.99 -8.99 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036986743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.871 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds