Wall clock time and date at job start Mon Mar 30 2020 07:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47091 * 2 1 4 4 H 1.09001 * 109.46969 * 305.55089 * 3 2 1 5 5 C 1.50692 * 109.47577 * 65.55457 * 3 2 1 6 6 H 1.08009 * 120.00275 * 60.04445 * 5 3 2 7 7 C 1.37878 * 120.00501 * 240.04795 * 5 3 2 8 8 N 1.31513 * 120.00561 * 173.51558 * 7 5 3 9 9 Si 1.86806 * 119.99554 * 353.51914 * 7 5 3 10 10 H 1.48499 * 109.46917 * 85.49847 * 9 7 5 11 11 H 1.48497 * 109.46763 * 205.49591 * 9 7 5 12 12 H 1.48498 * 109.46929 * 325.49594 * 9 7 5 13 13 N 1.46502 * 109.47305 * 185.55894 * 3 2 1 14 14 C 1.36040 * 126.34712 * 300.02017 * 13 3 2 15 15 N 1.30106 * 110.10228 * 179.97438 * 14 13 3 16 16 C 1.35787 * 109.64005 * 0.02562 * 15 14 13 17 17 C 1.39746 * 133.59604 * 180.32322 * 16 15 14 18 18 C 1.36595 * 119.88411 * 180.18681 * 17 16 15 19 19 C 1.50704 * 119.66629 * 179.73307 * 18 17 16 20 20 C 1.38777 * 120.67068 * 359.44874 * 18 17 16 21 21 C 1.50693 * 119.77707 * 180.29931 * 20 18 17 22 22 C 1.37860 * 120.44769 * 0.28170 * 20 18 17 23 23 C 1.38047 * 126.35349 * 119.99889 * 13 3 2 24 24 H 1.08991 * 109.47551 * 294.82928 * 1 2 3 25 25 H 1.09001 * 109.46807 * 54.83115 * 1 2 3 26 26 H 1.09006 * 109.47035 * 174.82421 * 1 2 3 27 27 H 1.09001 * 109.47564 * 239.99752 * 2 1 3 28 28 H 1.09003 * 109.47395 * 119.99253 * 2 1 3 29 29 H 0.96998 * 120.00267 * 180.02562 * 8 7 5 30 30 H 1.08006 * 124.95000 * 0.02562 * 14 13 3 31 31 H 1.07999 * 120.05634 * 359.92911 * 17 16 15 32 32 H 1.09001 * 109.46442 * 269.72378 * 19 18 17 33 33 H 1.08996 * 109.47233 * 149.72748 * 19 18 17 34 34 H 1.09002 * 109.46889 * 29.72239 * 19 18 17 35 35 H 1.08999 * 109.47139 * 90.00374 * 21 20 18 36 36 H 1.09003 * 109.47520 * 210.00277 * 21 20 18 37 37 H 1.09003 * 109.46987 * 330.00145 * 21 20 18 38 38 H 1.08004 * 120.15008 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 1.6531 2.1122 1.2933 6 1 2.0025 1.7126 2.2340 7 6 0.8531 3.2349 1.2761 8 7 0.4105 3.7446 2.4048 9 14 0.3976 4.0322 -0.3508 10 1 -0.7992 3.3577 -0.9146 11 1 0.0979 5.4698 -0.1306 12 1 1.5321 3.9027 -1.3002 13 7 3.4988 1.4447 -0.1338 14 6 4.3876 0.8674 0.7191 15 7 5.6029 1.0610 0.2970 16 6 5.5768 1.7770 -0.8565 17 6 6.5687 2.2497 -1.7199 18 6 6.2201 2.9640 -2.8308 19 6 7.2942 3.4766 -3.7554 20 6 4.8867 3.2175 -3.1198 21 6 4.5245 4.0019 -4.3545 22 6 3.8910 2.7562 -2.2853 23 6 4.2266 2.0326 -1.1489 24 1 -0.3634 0.4315 0.9326 25 1 -0.3633 0.5919 -0.8401 26 1 -0.3633 -1.0235 -0.0927 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 -0.1526 4.5343 2.3925 30 1 4.1228 0.3264 1.6156 31 1 7.6093 2.0542 -1.5070 32 1 7.6018 4.4729 -3.4377 33 1 6.9058 3.5235 -4.7727 34 1 8.1516 2.8043 -3.7243 35 1 4.3883 3.3182 -5.1924 36 1 3.5988 4.5497 -4.1784 37 1 5.3245 4.7053 -4.5857 38 1 2.8548 2.9566 -2.5147 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036986743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:55 Heat of formation + Delta-G solvation = 33.578166 kcal Electronic energy + Delta-G solvation = -19355.542565 eV Core-core repulsion = 16583.092615 eV Total energy + Delta-G solvation = -2772.449950 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.92194 -39.16473 -37.19817 -34.38914 -33.55013 -32.55458 -32.13113 -29.13269 -27.64903 -26.98119 -25.47006 -23.25055 -22.85591 -21.73719 -20.78285 -19.20991 -18.09964 -17.28745 -16.65755 -16.25197 -15.91925 -15.38866 -15.31161 -14.99082 -14.80659 -14.67373 -14.34653 -13.87055 -13.53843 -13.30694 -13.23911 -12.96279 -12.91411 -12.78970 -12.46351 -12.26181 -12.08479 -11.98751 -11.90210 -11.68579 -11.45191 -10.94668 -10.89335 -10.76865 -8.95198 -8.82244 -8.49780 -6.59924 0.09363 0.67228 1.20293 1.25294 1.31138 1.92589 2.05268 2.15760 2.92153 2.97711 3.43664 3.77488 3.91182 4.02126 4.10058 4.30843 4.36946 4.40979 4.46111 4.56841 4.60435 4.78400 4.79413 4.87351 4.90314 4.94210 4.98474 5.08240 5.17636 5.22493 5.24490 5.29139 5.36986 5.52519 5.68570 5.72973 5.75357 6.06564 6.11239 6.47771 6.50639 7.04807 7.10722 8.64453 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.007740 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.279209 B = 3616.642820 C = 4189.763373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.224 3.776 4 H 0.058 0.942 5 C -0.519 4.519 6 H 0.050 0.950 7 C 0.039 3.961 8 N -0.921 5.921 9 Si 0.915 3.085 10 H -0.248 1.248 11 H -0.286 1.286 12 H -0.250 1.250 13 N -0.468 5.468 14 C 0.261 3.739 15 N -0.540 5.540 16 C 0.010 3.990 17 C -0.082 4.082 18 C -0.099 4.099 19 C -0.102 4.102 20 C -0.079 4.079 21 C -0.107 4.107 22 C -0.130 4.130 23 C 0.017 3.983 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.272 0.728 30 H 0.218 0.782 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 -1.837 -14.212 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.126 3.874 4 H 0.076 0.924 5 C -0.558 4.558 6 H 0.068 0.932 7 C -0.164 4.164 8 N -0.557 5.557 9 Si 0.739 3.261 10 H -0.172 1.172 11 H -0.212 1.212 12 H -0.175 1.175 13 N -0.154 5.154 14 C -0.025 4.025 15 N -0.261 5.261 16 C -0.110 4.110 17 C -0.101 4.101 18 C -0.102 4.102 19 C -0.159 4.159 20 C -0.081 4.081 21 C -0.163 4.163 22 C -0.151 4.151 23 C -0.094 4.094 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.234 0.766 31 H 0.154 0.846 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.596 -1.986 -13.707 15.340 hybrid contribution -1.377 0.768 0.159 1.585 sum 5.219 -1.217 -13.548 14.569 Atomic orbital electron populations 1.21565 0.94051 1.01800 1.01647 1.21733 0.97507 0.94652 1.01153 1.19797 0.73956 0.96630 0.97064 0.92395 1.21084 1.30853 1.11976 0.91841 0.93180 1.25786 0.94843 0.96355 0.99379 1.69981 1.34236 1.23158 1.28370 0.86233 0.80320 0.78487 0.81057 1.17227 1.21178 1.17451 1.46961 1.09197 1.41125 1.18101 1.25350 0.83576 0.96922 0.96647 1.70380 1.21798 1.21665 1.12302 1.19556 0.92600 1.02966 0.95833 1.20039 0.97807 0.98860 0.93405 1.19570 0.94760 0.99371 0.96458 1.20803 0.95591 1.01479 0.97986 1.19845 0.91906 0.98949 0.97439 1.20841 1.02617 0.99344 0.93505 1.20100 0.99822 1.01360 0.93840 1.19433 0.92950 1.02846 0.94207 0.93288 0.93618 0.90547 0.92578 0.91706 0.91850 0.76578 0.84614 0.90378 0.89565 0.90641 0.89500 0.92088 0.88993 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.65 71.98 0.69 -3.82 16 2 C -0.11 -4.11 5.38 30.59 0.16 -3.94 16 3 C 0.22 9.86 2.42 44.24 0.11 9.97 16 4 H 0.06 2.57 4.21 -2.39 -0.01 2.56 16 5 C -0.52 -27.05 7.93 25.60 0.20 -26.85 16 6 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16 7 C 0.04 2.10 5.47 84.66 0.46 2.56 16 8 N -0.92 -53.54 13.96 21.45 0.30 -53.24 16 9 Si 0.92 40.86 26.99 68.60 1.85 42.71 16 10 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.25 -10.76 5.30 99.48 0.53 -10.23 16 13 N -0.47 -20.71 2.66 -501.74 -1.33 -22.05 16 14 C 0.26 11.05 11.74 180.06 2.11 13.17 16 15 N -0.54 -23.64 11.27 -192.03 -2.16 -25.81 16 16 C 0.01 0.42 7.23 39.45 0.29 0.71 16 17 C -0.08 -2.80 9.66 22.25 0.22 -2.59 16 18 C -0.10 -2.85 5.84 -20.12 -0.12 -2.97 16 19 C -0.10 -1.88 9.16 71.24 0.65 -1.23 16 20 C -0.08 -2.43 5.88 -19.83 -0.12 -2.55 16 21 C -0.11 -2.25 9.17 71.23 0.65 -1.60 16 22 C -0.13 -4.98 9.48 22.32 0.21 -4.77 16 23 C 0.02 0.74 6.87 38.86 0.27 1.00 16 24 H 0.05 1.90 7.57 -2.39 -0.02 1.89 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.22 7.97 8.06 -2.91 -0.02 7.95 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.25 6.66 -2.39 -0.02 1.23 16 34 H 0.07 1.22 8.07 -2.39 -0.02 1.20 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 37 H 0.09 1.50 6.66 -2.39 -0.02 1.49 16 38 H 0.11 4.24 6.39 -2.91 -0.02 4.22 16 Total: -1.00 -65.16 309.21 5.32 -59.85 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.87 Total: 21.45 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 5.80 Total: -22.91 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -3.20 Total: -101.09 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.85 Total: 42.71 kcal Total: -65.16 5.32 -59.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036986743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.424 kcal (2) G-P(sol) polarization free energy of solvation -65.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds