Wall clock time and date at job start Mon Mar 30 2020 08:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46969 * 2 1 4 4 C 1.50691 * 109.47314 * 239.99784 * 2 1 3 5 5 H 1.07997 * 119.99993 * 240.00071 * 4 2 1 6 6 C 1.37878 * 120.00443 * 59.99888 * 4 2 1 7 7 N 1.31512 * 119.99580 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00505 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46937 * 59.99983 * 8 6 4 10 10 H 1.48498 * 109.47228 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47086 * 300.00592 * 8 6 4 12 12 N 1.46499 * 109.46896 * 119.99565 * 2 1 3 13 13 C 1.39825 * 119.99906 * 275.00121 * 12 2 1 14 14 C 1.38864 * 120.06435 * 0.02562 * 13 12 2 15 15 C 1.38121 * 119.94950 * 180.02562 * 14 13 12 16 16 C 1.38394 * 120.07907 * 0.02562 * 15 14 13 17 17 Cl 1.73600 * 119.93086 * 179.97438 * 16 15 14 18 18 C 1.38362 * 120.13027 * 0.02562 * 16 15 14 19 19 C 1.38215 * 120.04929 * 359.68073 * 18 16 15 20 20 Cl 1.73604 * 120.04023 * 180.32246 * 19 18 16 21 21 H 1.08997 * 109.47413 * 300.00584 * 1 2 3 22 22 H 1.09005 * 109.46664 * 60.00232 * 1 2 3 23 23 H 1.08990 * 109.46901 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00574 * 180.02562 * 7 6 4 25 25 H 0.96995 * 119.99956 * 95.27664 * 12 2 1 26 26 H 1.07997 * 120.02714 * 0.02562 * 14 13 12 27 27 H 1.07997 * 119.95999 * 180.02562 * 15 14 13 28 28 H 1.08005 * 119.97233 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 1.8282 -2.5200 -4.0080 10 1 1.8281 -0.4194 -5.2204 11 1 3.8077 -1.1191 -4.0075 12 7 2.0183 -0.6905 1.1962 13 6 2.1518 0.0071 2.4006 14 6 1.8214 1.3544 2.4645 15 6 1.9547 2.0413 3.6553 16 6 2.4175 1.3887 4.7845 17 17 2.5842 2.2560 6.2791 18 6 2.7487 0.0466 4.7244 19 6 2.6116 -0.6475 3.5370 20 17 3.0193 -2.3334 3.4639 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 0.7090 1.1613 -3.4844 25 1 2.2528 -1.6307 1.1518 26 1 1.4605 1.8647 1.5838 27 1 1.6974 3.0890 3.7053 28 1 3.1100 -0.4601 5.6071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871142.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:08 Heat of formation + Delta-G solvation = 0.831597 kcal Electronic energy + Delta-G solvation = -14673.658379 eV Core-core repulsion = 11968.679895 eV Total energy + Delta-G solvation = -2704.978484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25294 -36.54794 -36.13139 -35.38471 -32.84382 -30.58406 -29.86345 -27.29431 -25.33603 -22.86942 -21.94422 -20.14502 -17.73051 -16.70225 -15.80203 -15.54269 -14.66495 -14.27077 -13.87444 -13.64618 -13.43241 -12.51712 -12.34367 -12.17068 -11.92006 -11.43236 -11.39679 -11.10762 -10.94456 -10.72804 -10.64482 -10.58766 -10.36236 -10.24944 -9.41201 -9.15810 -8.61808 -8.58980 -6.79135 -6.25607 -4.34212 1.45715 1.69295 2.24718 2.69942 3.19718 3.24846 3.26927 3.93882 4.10446 4.35601 5.02978 5.07912 5.26089 5.59272 5.70132 6.04305 6.17943 6.41752 6.50910 6.61708 6.79972 6.85992 6.93265 7.24527 7.55298 7.69206 7.91512 8.11613 8.47188 8.74430 9.33312 10.80383 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.005408 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.730560 B = 5176.696994 C = 5863.751137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.264 3.736 3 H 0.044 0.956 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.708 5.708 13 C 0.255 3.745 14 C -0.183 4.183 15 C -0.051 4.051 16 C -0.110 4.110 17 Cl -0.089 7.089 18 C -0.049 4.049 19 C -0.128 4.128 20 Cl -0.076 7.076 21 H 0.015 0.985 22 H 0.093 0.907 23 H 0.031 0.969 24 H 0.266 0.734 25 H 0.396 0.604 26 H 0.145 0.855 27 H 0.130 0.870 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 0.245 11.613 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.062 0.938 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.328 5.328 13 C 0.141 3.859 14 C -0.206 4.206 15 C -0.071 4.071 16 C -0.139 4.139 17 Cl -0.061 7.061 18 C -0.069 4.069 19 C -0.161 4.161 20 Cl -0.048 7.048 21 H 0.034 0.966 22 H 0.111 0.889 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.232 0.768 26 H 0.162 0.838 27 H 0.148 0.852 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.606 0.369 11.313 11.432 hybrid contribution 0.434 -0.903 -0.738 1.244 sum 2.040 -0.534 10.575 10.783 Atomic orbital electron populations 1.22199 0.98340 0.99870 1.00835 1.18866 0.90988 0.93547 0.80433 0.93839 1.21129 1.32562 1.13449 0.90119 0.92051 1.24853 0.94638 0.94927 0.99067 1.69848 1.35789 1.22423 1.24243 0.86478 0.79274 0.79673 0.81578 1.20085 1.21032 1.20076 1.45925 1.66885 1.12750 1.07196 1.17863 0.90416 0.91522 0.86095 1.20738 1.08516 0.92471 0.98909 1.20814 0.95940 0.99762 0.90599 1.20180 1.13330 0.92605 0.87832 1.98312 1.97035 1.76814 1.33942 1.20444 0.97885 0.92147 0.96376 1.20059 1.15293 0.85880 0.94838 1.98316 1.92826 1.15207 1.98413 0.96624 0.88897 0.95016 0.92376 0.76827 0.83761 0.85161 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.21 37.16 0.34 -3.13 15 2 C 0.26 6.09 2.25 -69.09 -0.16 5.94 15 3 H 0.04 1.08 6.49 -51.92 -0.34 0.74 15 4 C -0.53 -13.63 8.73 -34.44 -0.30 -13.93 15 5 H 0.06 1.55 7.73 -52.49 -0.41 1.14 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.89 -23.45 11.32 55.43 0.63 -22.82 15 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 15 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.28 -6.14 7.11 56.52 0.40 -5.73 15 12 N -0.71 -14.26 5.20 -53.24 -0.28 -14.53 15 13 C 0.26 4.64 6.64 -83.71 -0.56 4.09 15 14 C -0.18 -3.14 8.85 -39.39 -0.35 -3.49 15 15 C -0.05 -0.76 9.82 -39.57 -0.39 -1.15 15 16 C -0.11 -1.60 6.32 -39.48 -0.25 -1.85 15 17 Cl -0.09 -1.15 28.95 -51.86 -1.50 -2.65 15 18 C -0.05 -0.72 9.60 -39.54 -0.38 -1.10 15 19 C -0.13 -2.10 6.34 -39.32 -0.25 -2.35 15 20 Cl -0.08 -1.16 27.59 -51.86 -1.43 -2.59 15 21 H 0.01 0.31 7.71 -51.93 -0.40 -0.09 15 22 H 0.09 2.29 6.07 -51.93 -0.32 1.97 15 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 25 H 0.40 7.80 7.21 -40.82 -0.29 7.51 15 26 H 0.14 2.58 6.12 -52.49 -0.32 2.26 15 27 H 0.13 1.65 8.06 -52.49 -0.42 1.22 15 28 H 0.13 1.70 8.06 -52.48 -0.42 1.27 15 LS Contribution 270.88 15.07 4.08 4.08 Total: -1.00 -24.94 270.88 -8.38 -33.31 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.48 Total: 5.38 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.38 Total: -15.30 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.35 Total: -37.35 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -2.93 Total: -5.24 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -24.94 -8.38 -33.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871142.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.145 kcal (2) G-P(sol) polarization free energy of solvation -24.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds