Wall clock time and date at job start Mon Mar 30 2020 07:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47232 * 46.69995 * 3 2 1 5 5 C 1.52997 * 109.46996 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46904 * 179.26540 * 5 4 3 7 7 C 1.46895 * 111.00341 * 287.82384 * 6 5 4 8 8 C 1.50698 * 109.46971 * 299.55438 * 7 6 5 9 9 H 1.07999 * 120.00557 * 4.14755 * 8 7 6 10 10 C 1.37886 * 119.99815 * 184.14370 * 8 7 6 11 11 N 1.31510 * 120.00138 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99893 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47532 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47194 * 120.00261 * 12 10 8 15 15 H 1.48497 * 109.47361 * 240.00573 * 12 10 8 16 16 C 1.46898 * 110.99959 * 163.86680 * 6 5 4 17 17 C 1.50693 * 109.47352 * 190.00230 * 16 6 5 18 18 C 1.38241 * 119.99913 * 90.00297 * 17 16 6 19 19 C 1.38234 * 119.99873 * 179.97438 * 18 17 16 20 20 C 1.38241 * 120.00323 * 359.95843 * 19 18 17 21 21 C 1.38233 * 119.99380 * 0.27031 * 20 19 18 22 22 C 1.38235 * 120.00571 * 359.52110 * 21 20 19 23 23 H 1.08992 * 109.47073 * 286.69407 * 3 2 1 24 24 H 1.09007 * 109.46422 * 166.69584 * 3 2 1 25 25 H 1.09005 * 109.46980 * 59.99507 * 4 3 2 26 26 H 1.09000 * 109.46842 * 300.00046 * 4 3 2 27 27 H 1.09001 * 109.46709 * 59.27200 * 5 4 3 28 28 H 1.08992 * 109.47148 * 299.27224 * 5 4 3 29 29 H 1.09003 * 109.47190 * 59.55900 * 7 6 5 30 30 H 1.09000 * 109.47082 * 179.55252 * 7 6 5 31 31 H 0.96996 * 120.00613 * 179.97438 * 11 10 8 32 32 H 1.09003 * 109.47294 * 70.00203 * 16 6 5 33 33 H 1.08996 * 109.47430 * 310.00645 * 16 6 5 34 34 H 1.07994 * 120.00052 * 359.97438 * 18 17 16 35 35 H 1.07999 * 120.00026 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.00188 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.99776 * 179.72616 * 21 20 19 38 38 H 1.07999 * 120.00435 * 180.25565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9884 -1.0498 5 6 4.6485 -0.9872 -1.0502 6 7 5.1386 -1.9497 -2.0459 7 6 4.9195 -3.3306 -1.5956 8 6 5.6635 -3.5624 -0.3057 9 1 6.1861 -2.7460 0.1705 10 6 5.6769 -4.8168 0.2666 11 7 5.0409 -5.8110 -0.3134 12 14 6.5997 -5.1042 1.8650 13 1 7.2273 -3.8340 2.3097 14 1 5.6520 -5.5782 2.9054 15 1 7.6530 -6.1289 1.6512 16 6 6.5559 -1.7144 -2.3523 17 6 6.9576 -2.5474 -3.5421 18 6 6.8349 -2.0328 -4.8193 19 6 7.2039 -2.7968 -5.9106 20 6 7.6964 -4.0751 -5.7249 21 6 7.8146 -4.5913 -4.4480 22 6 7.4497 -3.8259 -3.3564 23 1 2.9715 -0.2944 0.9843 24 1 2.9708 1.0010 -0.2365 25 1 2.7549 -0.6933 -2.0342 26 1 2.7556 -1.9887 -0.8134 27 1 5.0122 -1.2696 -0.0622 28 1 5.0109 0.0100 -1.2995 29 1 3.8541 -3.4959 -1.4353 30 1 5.2842 -4.0225 -2.3548 31 1 5.0505 -6.6936 0.0889 32 1 7.1647 -1.9924 -1.4920 33 1 6.7083 -0.6593 -2.5794 34 1 6.4508 -1.0340 -4.9644 35 1 7.1077 -2.3949 -6.9084 36 1 7.9851 -4.6717 -6.5775 37 1 8.1952 -5.5916 -4.3031 38 1 7.5459 -4.2277 -2.3585 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039593268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:03 Heat of formation + Delta-G solvation = 42.984372 kcal Electronic energy + Delta-G solvation = -18658.763056 eV Core-core repulsion = 15886.720989 eV Total energy + Delta-G solvation = -2772.042067 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -38.91158 -37.23345 -36.30484 -33.32116 -32.51641 -30.68556 -30.32486 -27.29265 -26.51492 -24.17022 -22.60216 -21.93718 -20.57118 -19.57754 -17.28512 -16.57839 -16.04359 -15.47151 -14.90477 -14.71080 -14.55649 -14.40236 -13.70937 -13.55171 -12.93994 -12.86052 -12.60908 -12.56018 -12.28405 -11.98968 -11.45482 -11.37333 -11.15492 -11.12203 -10.95501 -10.78270 -10.61236 -10.33579 -10.16334 -10.07112 -9.92619 -9.61310 -8.49949 -8.31751 -8.17977 -7.20956 -6.07122 -4.16506 1.89849 1.97321 2.93513 2.96264 3.21450 3.31310 3.32124 4.16503 4.32739 4.35001 5.04731 5.22841 5.28765 5.36684 5.39884 5.51147 5.58596 5.61402 5.72955 5.83161 5.93696 6.06115 6.10301 6.22904 6.26439 6.38743 6.59901 6.65582 6.68635 6.76682 6.96000 7.07993 7.23533 7.31475 7.52211 7.58727 7.73852 7.87681 7.99984 8.21628 8.26188 8.94503 9.49912 10.97230 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.007435 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.341111 B = 3765.135893 C = 5560.557869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.216 3.784 3 C -0.027 4.027 4 C -0.108 4.108 5 C 0.060 3.940 6 N -0.538 5.538 7 C 0.180 3.820 8 C -0.548 4.548 9 H 0.058 0.942 10 C 0.068 3.932 11 N -0.885 5.885 12 Si 0.882 3.118 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.097 3.903 17 C -0.060 4.060 18 C -0.108 4.108 19 C -0.135 4.135 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.089 4.089 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.042 0.958 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 8.310 -5.055 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.101 4.101 3 C -0.067 4.067 4 C -0.147 4.147 5 C -0.069 4.069 6 N -0.261 5.261 7 C 0.054 3.946 8 C -0.587 4.587 9 H 0.076 0.924 10 C -0.135 4.135 11 N -0.524 5.524 12 Si 0.710 3.290 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.030 4.030 17 C -0.061 4.061 18 C -0.127 4.127 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.108 4.108 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.865 8.197 -5.461 10.258 hybrid contribution 1.313 -0.637 1.688 2.231 sum 4.177 7.560 -3.773 9.426 Atomic orbital electron populations 1.81174 1.13330 1.09413 1.09388 1.29397 0.95500 0.92574 0.92611 1.19359 0.81050 1.02895 1.03418 1.21469 0.96774 0.99154 0.97286 1.21904 0.93371 0.95174 0.96436 1.62515 1.14970 1.06519 1.42106 1.19886 0.96893 0.83336 0.94475 1.21715 1.33232 0.95086 1.08645 0.92409 1.24926 0.95323 0.96214 0.97082 1.69950 1.42097 1.01212 1.39102 0.86704 0.79853 0.78276 0.84182 1.19822 1.21038 1.21014 1.20881 0.90913 0.96536 0.94695 1.19825 0.96922 0.94865 0.94475 1.20951 0.99811 0.99772 0.92170 1.20975 1.01120 0.94977 0.98204 1.21003 1.01290 0.95905 0.96818 1.21113 1.01020 0.99584 0.92785 1.21365 0.96165 0.93492 0.99731 0.87364 0.87807 0.91333 0.90316 0.92828 0.92788 0.95363 0.93989 0.92873 0.92922 0.92239 0.86724 0.87046 0.87122 0.86786 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.58 18.54 42.15 0.78 -6.79 16 2 C 0.22 2.98 15.43 -20.76 -0.32 2.66 16 3 C -0.03 -0.28 5.70 -29.52 -0.17 -0.45 16 4 C -0.11 -1.53 5.23 -26.73 -0.14 -1.67 16 5 C 0.06 0.93 4.80 -3.83 -0.02 0.92 16 6 N -0.54 -10.15 4.66 -237.53 -1.11 -11.25 16 7 C 0.18 4.18 4.62 -4.98 -0.02 4.16 16 8 C -0.55 -13.45 7.18 -34.44 -0.25 -13.70 16 9 H 0.06 1.40 5.95 -52.49 -0.31 1.08 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 12 Si 0.88 20.10 29.54 -169.99 -5.02 15.08 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.10 1.71 4.94 -4.98 -0.02 1.68 16 17 C -0.06 -1.07 4.89 -104.62 -0.51 -1.58 16 18 C -0.11 -1.70 9.70 -39.58 -0.38 -2.09 16 19 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 20 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 21 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 22 C -0.09 -1.67 7.91 -39.58 -0.31 -1.99 16 23 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.35 6.74 -51.93 -0.35 1.00 16 27 H 0.05 0.92 6.12 -51.93 -0.32 0.61 16 28 H 0.05 0.70 7.80 -51.93 -0.41 0.30 16 29 H 0.03 0.72 6.68 -51.93 -0.35 0.37 16 30 H 0.04 1.08 5.92 -51.93 -0.31 0.78 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.05 1.01 6.56 -51.93 -0.34 0.67 16 33 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 2.79 7.83 -52.49 -0.41 2.38 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -28.90 319.72 -8.52 -37.42 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.29 Total: 2.18 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.44 Total: -17.64 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.41 Total: -41.86 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.90 -8.52 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039593268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.409 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds