Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47232 * 46.69995 * 3 2 1 5 5 C 1.52997 * 109.46996 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46904 * 179.26540 * 5 4 3 7 7 C 1.46895 * 111.00341 * 287.82384 * 6 5 4 8 8 C 1.50698 * 109.46971 * 299.55438 * 7 6 5 9 9 H 1.07999 * 120.00557 * 4.14755 * 8 7 6 10 10 C 1.37886 * 119.99815 * 184.14370 * 8 7 6 11 11 N 1.31510 * 120.00138 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99893 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47532 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47194 * 120.00261 * 12 10 8 15 15 H 1.48497 * 109.47361 * 240.00573 * 12 10 8 16 16 C 1.46898 * 110.99959 * 163.86680 * 6 5 4 17 17 C 1.50693 * 109.47352 * 190.00230 * 16 6 5 18 18 C 1.38241 * 119.99913 * 90.00297 * 17 16 6 19 19 C 1.38234 * 119.99873 * 179.97438 * 18 17 16 20 20 C 1.38241 * 120.00323 * 359.95843 * 19 18 17 21 21 C 1.38233 * 119.99380 * 0.27031 * 20 19 18 22 22 C 1.38235 * 120.00571 * 359.52110 * 21 20 19 23 23 H 1.08992 * 109.47073 * 286.69407 * 3 2 1 24 24 H 1.09007 * 109.46422 * 166.69584 * 3 2 1 25 25 H 1.09005 * 109.46980 * 59.99507 * 4 3 2 26 26 H 1.09000 * 109.46842 * 300.00046 * 4 3 2 27 27 H 1.09001 * 109.46709 * 59.27200 * 5 4 3 28 28 H 1.08992 * 109.47148 * 299.27224 * 5 4 3 29 29 H 1.09003 * 109.47190 * 59.55900 * 7 6 5 30 30 H 1.09000 * 109.47082 * 179.55252 * 7 6 5 31 31 H 0.96996 * 120.00613 * 179.97438 * 11 10 8 32 32 H 1.09003 * 109.47294 * 70.00203 * 16 6 5 33 33 H 1.08996 * 109.47430 * 310.00645 * 16 6 5 34 34 H 1.07994 * 120.00052 * 359.97438 * 18 17 16 35 35 H 1.07999 * 120.00026 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.00188 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.99776 * 179.72616 * 21 20 19 38 38 H 1.07999 * 120.00435 * 180.25565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9884 -1.0498 5 6 4.6485 -0.9872 -1.0502 6 7 5.1386 -1.9497 -2.0459 7 6 4.9195 -3.3306 -1.5956 8 6 5.6635 -3.5624 -0.3057 9 1 6.1861 -2.7460 0.1705 10 6 5.6769 -4.8168 0.2666 11 7 5.0409 -5.8110 -0.3134 12 14 6.5997 -5.1042 1.8650 13 1 7.2273 -3.8340 2.3097 14 1 5.6520 -5.5782 2.9054 15 1 7.6530 -6.1289 1.6512 16 6 6.5559 -1.7144 -2.3523 17 6 6.9576 -2.5474 -3.5421 18 6 6.8349 -2.0328 -4.8193 19 6 7.2039 -2.7968 -5.9106 20 6 7.6964 -4.0751 -5.7249 21 6 7.8146 -4.5913 -4.4480 22 6 7.4497 -3.8259 -3.3564 23 1 2.9715 -0.2944 0.9843 24 1 2.9708 1.0010 -0.2365 25 1 2.7549 -0.6933 -2.0342 26 1 2.7556 -1.9887 -0.8134 27 1 5.0122 -1.2696 -0.0622 28 1 5.0109 0.0100 -1.2995 29 1 3.8541 -3.4959 -1.4353 30 1 5.2842 -4.0225 -2.3548 31 1 5.0505 -6.6936 0.0889 32 1 7.1647 -1.9924 -1.4920 33 1 6.7083 -0.6593 -2.5794 34 1 6.4508 -1.0340 -4.9644 35 1 7.1077 -2.3949 -6.9084 36 1 7.9851 -4.6717 -6.5775 37 1 8.1952 -5.5916 -4.3031 38 1 7.5459 -4.2277 -2.3585 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039593268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = 26.757295 kcal Electronic energy + Delta-G solvation = -18659.466715 eV Core-core repulsion = 15886.720989 eV Total energy + Delta-G solvation = -2772.745726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23025 -38.53755 -37.58293 -34.75910 -34.20354 -32.00937 -31.58060 -29.05711 -27.75392 -25.86564 -24.00700 -23.21269 -21.82384 -21.11411 -18.50713 -18.27441 -17.38095 -16.86860 -16.36215 -16.10967 -15.90020 -15.79848 -15.09442 -14.85443 -14.44664 -14.13859 -13.99646 -13.83163 -13.70988 -13.24884 -13.08650 -12.84724 -12.61560 -12.53927 -12.26550 -12.25689 -12.18337 -11.76042 -11.67743 -11.55293 -11.39811 -11.25250 -10.51135 -9.60591 -9.47521 -8.83323 -8.04631 -6.22413 0.63905 0.69939 1.37822 1.41646 1.50147 1.82636 1.88421 2.42110 2.99020 3.19224 3.20564 3.71885 4.12956 4.20980 4.27554 4.33157 4.43481 4.46592 4.56429 4.70583 4.81841 4.84343 4.91258 4.94648 5.03327 5.10304 5.32634 5.36881 5.38423 5.44958 5.52674 5.56222 5.74151 5.79877 5.89579 5.98333 6.18696 6.32459 6.38826 6.65412 6.73600 7.00820 7.47844 8.96247 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.007435 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.341111 B = 3765.135893 C = 5560.557869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.239 3.761 3 C -0.015 4.015 4 C -0.101 4.101 5 C 0.058 3.942 6 N -0.539 5.539 7 C 0.199 3.801 8 C -0.536 4.536 9 H 0.064 0.936 10 C 0.014 3.986 11 N -0.926 5.926 12 Si 0.942 3.058 13 H -0.260 1.260 14 H -0.286 1.286 15 H -0.287 1.287 16 C 0.100 3.900 17 C -0.079 4.079 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.117 4.117 23 H 0.124 0.876 24 H 0.150 0.850 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.096 0.904 29 H -0.002 1.002 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.029 0.971 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 10.834 -5.964 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.077 4.077 3 C -0.055 4.055 4 C -0.140 4.140 5 C -0.070 4.070 6 N -0.262 5.262 7 C 0.072 3.928 8 C -0.575 4.575 9 H 0.082 0.918 10 C -0.185 4.185 11 N -0.566 5.566 12 Si 0.769 3.231 13 H -0.184 1.184 14 H -0.212 1.212 15 H -0.213 1.213 16 C -0.027 4.027 17 C -0.080 4.080 18 C -0.128 4.128 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.136 4.136 23 H 0.142 0.858 24 H 0.167 0.833 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.016 0.984 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.979 10.750 -6.364 13.111 hybrid contribution 1.014 -1.397 1.868 2.544 sum 4.993 9.353 -4.495 11.516 Atomic orbital electron populations 1.81197 1.15161 1.11395 1.11211 1.29925 0.95951 0.90855 0.90970 1.19493 0.78775 1.04218 1.03000 1.21330 0.95942 0.98037 0.98693 1.22040 0.94022 0.96125 0.94786 1.62434 1.16195 1.04664 1.42898 1.19432 0.94459 0.85774 0.93132 1.21968 1.31977 0.94905 1.08668 0.91840 1.25675 0.96346 0.96288 1.00149 1.70085 1.44194 1.01560 1.40807 0.85742 0.78464 0.78409 0.80504 1.18394 1.21199 1.21341 1.20928 0.89346 0.98460 0.93969 1.19945 0.97673 0.94573 0.95763 1.21242 0.99245 1.00960 0.91376 1.21429 0.99243 0.94457 0.99592 1.21366 1.00243 0.96551 0.96652 1.21285 1.01456 0.99860 0.93422 1.21192 0.98785 0.94924 0.98655 0.85813 0.83258 0.90990 0.94395 0.94379 0.88576 0.98382 0.97058 0.93191 0.95230 0.88687 0.84263 0.83419 0.84061 0.86362 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -16.80 18.54 20.01 0.37 -16.43 16 2 C 0.24 6.22 15.43 89.44 1.38 7.60 16 3 C -0.01 -0.27 5.70 28.79 0.16 -0.11 16 4 C -0.10 -2.71 5.23 30.59 0.16 -2.55 16 5 C 0.06 1.70 4.80 86.30 0.41 2.11 16 6 N -0.54 -20.06 4.66 -905.42 -4.22 -24.28 16 7 C 0.20 9.62 4.62 85.56 0.40 10.02 16 8 C -0.54 -27.05 7.18 25.60 0.18 -26.87 16 9 H 0.06 3.08 5.95 -2.91 -0.02 3.06 16 10 C 0.01 0.77 5.46 84.66 0.46 1.23 16 11 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 12 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 13 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 14 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 16 C 0.10 3.42 4.94 85.56 0.42 3.84 16 17 C -0.08 -2.77 4.89 -19.87 -0.10 -2.87 16 18 C -0.11 -3.17 9.70 22.27 0.22 -2.95 16 19 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 20 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 21 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 22 C -0.12 -4.57 7.91 22.27 0.18 -4.40 16 23 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.15 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.04 1.33 6.74 -2.39 -0.02 1.31 16 27 H 0.04 1.25 6.12 -2.39 -0.01 1.23 16 28 H 0.10 2.05 7.80 -2.39 -0.02 2.03 16 29 H 0.00 -0.10 6.68 -2.39 -0.02 -0.12 16 30 H 0.01 0.62 5.92 -2.39 -0.01 0.60 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.03 1.13 6.56 -2.39 -0.02 1.12 16 33 H 0.09 2.54 7.80 -2.39 -0.02 2.52 16 34 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 Total: -1.00 -66.81 319.72 4.06 -62.75 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.04 Total: 13.21 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.55 Total: -26.03 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -3.56 Total: -94.11 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -66.81 4.06 -62.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039593268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.509 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds