Wall clock time and date at job start Mon Mar 30 2020 08:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00417 * 2 1 4 4 H 1.48503 * 109.47133 * 269.99937 * 3 2 1 5 5 H 1.48507 * 109.47238 * 29.99250 * 3 2 1 6 6 H 1.48493 * 109.47489 * 149.99533 * 3 2 1 7 7 C 1.37879 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00462 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99996 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.39969 * 111.00085 * 189.99679 * 10 9 7 12 12 N 1.31236 * 123.74359 * 236.06499 * 11 10 9 13 13 S 1.69405 * 105.97684 * 179.97438 * 12 11 10 14 14 N 1.56237 * 97.18279 * 0.02562 * 13 12 11 15 15 C 1.30006 * 109.00211 * 359.97438 * 14 13 12 16 16 Cl 1.73595 * 122.34030 * 179.97438 * 15 14 13 17 17 C 1.46898 * 111.00214 * 66.04356 * 10 9 7 18 18 C 1.53006 * 117.49754 * 248.62249 * 17 10 9 19 19 C 1.53000 * 59.99938 * 252.50957 * 18 17 10 20 20 H 0.96998 * 119.99477 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47387 * 60.00077 * 9 7 2 22 22 H 1.09008 * 109.46708 * 299.99822 * 9 7 2 23 23 H 1.08993 * 115.55256 * 34.33113 * 17 10 9 24 24 H 1.08996 * 117.49726 * 0.02562 * 18 17 10 25 25 H 1.08998 * 117.49910 * 145.01714 * 18 17 10 26 26 H 1.08999 * 117.50080 * 252.50992 * 19 18 17 27 27 H 1.09001 * 117.49422 * 107.49130 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6528 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.3816 -2.6232 0.2284 12 7 6.2359 -3.2014 -0.5828 13 16 7.7629 -2.9885 0.1192 14 7 7.2892 -2.1984 1.3811 15 6 5.9973 -2.0612 1.3344 16 17 5.1061 -1.2325 2.5724 17 6 3.6521 -3.2608 -1.2525 18 6 2.6169 -4.3852 -1.1807 19 6 4.0926 -4.7175 -1.4109 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8889 23 1 3.6543 -2.6346 -2.1446 24 1 2.1946 -4.6188 -0.2034 25 1 1.9377 -4.4987 -2.0256 26 1 4.3842 -5.0496 -2.4072 27 1 4.6413 -5.1700 -0.5849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042550233.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:02 Heat of formation + Delta-G solvation = 99.075151 kcal Electronic energy + Delta-G solvation = -15309.108193 eV Core-core repulsion = 12642.726327 eV Total energy + Delta-G solvation = -2666.381867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.024 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54271 -37.59244 -36.45500 -34.13810 -32.94411 -31.79465 -27.64202 -25.56152 -22.30330 -21.95821 -21.48232 -19.54325 -18.77853 -17.17345 -16.21720 -15.88891 -15.36982 -14.93560 -14.28485 -14.08210 -12.92891 -12.77571 -12.47351 -12.01303 -11.64822 -11.45906 -11.22020 -11.02893 -10.95616 -10.88328 -10.62566 -10.47010 -9.98877 -9.89322 -9.70624 -9.31227 -8.99787 -8.64132 -7.76641 -6.16603 -4.15709 0.58591 1.00727 1.57618 2.20660 2.74072 3.20347 3.28839 3.30917 3.81004 4.31325 4.37407 4.75698 5.14814 5.31228 5.40813 5.46737 5.72833 5.97596 6.09602 6.34366 6.41143 6.55649 6.64362 6.69249 7.21045 7.45236 7.62173 8.42757 8.92224 9.42003 10.95684 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.009458 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.994601 B = 2959.680377 C = 3820.658662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.860 3.140 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.090 0.910 9 C 0.153 3.847 10 N -0.397 5.397 11 C 0.291 3.709 12 N -0.512 5.512 13 S 0.512 5.488 14 N -0.512 5.512 15 C 0.099 3.901 16 Cl 0.037 6.963 17 C 0.034 3.966 18 C -0.150 4.150 19 C -0.162 4.162 20 H 0.266 0.734 21 H 0.058 0.942 22 H 0.001 0.999 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.054 -5.523 -0.302 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.687 3.313 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.549 4.549 8 H 0.108 0.892 9 C 0.029 3.971 10 N -0.118 5.118 11 C 0.022 3.978 12 N -0.352 5.352 13 S 0.550 5.450 14 N -0.353 5.353 15 C -0.112 4.112 16 Cl 0.065 6.935 17 C -0.074 4.074 18 C -0.188 4.188 19 C -0.200 4.200 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.018 0.982 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.440 -6.194 -0.505 14.807 hybrid contribution -0.864 1.995 0.331 2.200 sum 12.576 -4.198 -0.174 13.259 Atomic orbital electron populations 1.69854 1.05973 1.27030 1.50082 1.24750 0.94675 0.98445 0.94601 0.87080 0.80811 0.84543 0.78905 1.20033 1.20682 1.18721 1.20799 0.87221 0.95396 1.51469 0.89224 1.20834 0.98619 0.79947 0.97728 1.59252 0.99846 1.20190 1.32505 1.21303 0.93063 0.93494 0.89981 1.77391 1.01445 1.30396 1.25955 1.82153 1.15434 1.42379 1.05059 1.71562 1.15103 1.20898 1.27737 1.22553 0.87708 1.05066 0.95907 1.98428 1.70399 1.74860 1.49839 1.22106 1.05108 0.89856 0.90290 1.23051 0.91609 1.00798 1.03367 1.22946 0.97659 0.97195 1.02209 0.92389 0.92440 0.98173 0.88144 0.88217 0.88711 0.89039 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.96 55.43 0.77 -25.17 15 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 15 3 Si 0.86 20.42 27.47 -169.99 -4.67 15.75 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.26 -5.98 6.54 56.52 0.37 -5.61 15 7 C -0.51 -13.53 9.29 -34.44 -0.32 -13.85 15 8 H 0.09 2.56 7.50 -52.49 -0.39 2.17 15 9 C 0.15 3.52 3.48 -4.98 -0.02 3.50 15 10 N -0.40 -8.16 4.65 -170.24 -0.79 -8.95 15 11 C 0.29 5.48 6.07 -155.28 -0.94 4.53 15 12 N -0.51 -8.65 9.74 29.06 0.28 -8.36 15 13 S 0.51 7.14 24.22 -107.50 -2.60 4.53 15 14 N -0.51 -8.49 11.40 22.67 0.26 -8.23 15 15 C 0.10 1.81 7.09 -18.23 -0.13 1.68 15 16 Cl 0.04 0.68 26.12 -51.86 -1.35 -0.67 15 17 C 0.03 0.64 4.19 -67.71 -0.28 0.36 15 18 C -0.15 -2.54 10.03 -26.73 -0.27 -2.81 15 19 C -0.16 -2.53 8.82 -26.73 -0.24 -2.77 15 20 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 21 H 0.06 1.32 3.78 -51.93 -0.20 1.12 15 22 H 0.00 0.01 7.50 -51.92 -0.39 -0.38 15 23 H 0.10 1.93 8.03 -51.93 -0.42 1.52 15 24 H 0.10 1.77 8.14 -51.93 -0.42 1.35 15 25 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 26 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.09 1.42 7.71 -51.93 -0.40 1.02 15 LS Contribution 259.99 15.07 3.92 3.92 Total: -1.00 -28.06 259.99 -8.71 -36.77 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -2.23 Total: -2.28 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.29 Total: -7.30 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.52 Total: -50.72 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -2.60 Total: 4.53 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -1.35 Total: -0.67 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.06 -8.71 -36.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042550233.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.841 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds