Wall clock time and date at job start Mon Mar 30 2020 08:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00417 * 2 1 4 4 H 1.48503 * 109.47133 * 269.99937 * 3 2 1 5 5 H 1.48507 * 109.47238 * 29.99250 * 3 2 1 6 6 H 1.48493 * 109.47489 * 149.99533 * 3 2 1 7 7 C 1.37879 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00462 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99996 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.39969 * 111.00085 * 189.99679 * 10 9 7 12 12 N 1.31236 * 123.74359 * 236.06499 * 11 10 9 13 13 S 1.69405 * 105.97684 * 179.97438 * 12 11 10 14 14 N 1.56237 * 97.18279 * 0.02562 * 13 12 11 15 15 C 1.30006 * 109.00211 * 359.97438 * 14 13 12 16 16 Cl 1.73595 * 122.34030 * 179.97438 * 15 14 13 17 17 C 1.46898 * 111.00214 * 66.04356 * 10 9 7 18 18 C 1.53006 * 117.49754 * 248.62249 * 17 10 9 19 19 C 1.53000 * 59.99938 * 252.50957 * 18 17 10 20 20 H 0.96998 * 119.99477 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47387 * 60.00077 * 9 7 2 22 22 H 1.09008 * 109.46708 * 299.99822 * 9 7 2 23 23 H 1.08993 * 115.55256 * 34.33113 * 17 10 9 24 24 H 1.08996 * 117.49726 * 0.02562 * 18 17 10 25 25 H 1.08998 * 117.49910 * 145.01714 * 18 17 10 26 26 H 1.08999 * 117.50080 * 252.50992 * 19 18 17 27 27 H 1.09001 * 117.49422 * 107.49130 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6528 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.3816 -2.6232 0.2284 12 7 6.2359 -3.2014 -0.5828 13 16 7.7629 -2.9885 0.1192 14 7 7.2892 -2.1984 1.3811 15 6 5.9973 -2.0612 1.3344 16 17 5.1061 -1.2325 2.5724 17 6 3.6521 -3.2608 -1.2525 18 6 2.6169 -4.3852 -1.1807 19 6 4.0926 -4.7175 -1.4109 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8889 23 1 3.6543 -2.6346 -2.1446 24 1 2.1946 -4.6188 -0.2034 25 1 1.9377 -4.4987 -2.0256 26 1 4.3842 -5.0496 -2.4072 27 1 4.6413 -5.1700 -0.5849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042550233.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:01 Heat of formation + Delta-G solvation = 80.938479 kcal Electronic energy + Delta-G solvation = -15309.894659 eV Core-core repulsion = 12642.726327 eV Total energy + Delta-G solvation = -2667.168332 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.024 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.90795 -39.00048 -37.80881 -35.67968 -34.67707 -33.44123 -29.49364 -26.93420 -24.14157 -23.30774 -22.86273 -20.95946 -20.08974 -19.07648 -17.69617 -17.41281 -16.72560 -16.42083 -16.07396 -15.70535 -14.60056 -14.41393 -13.98355 -13.50913 -13.15082 -13.00985 -12.71589 -12.53135 -12.49297 -12.33406 -12.01422 -11.96682 -11.75806 -11.52061 -11.19588 -10.96545 -10.72946 -10.34371 -9.16277 -8.26656 -6.29247 -0.74860 -0.26623 0.28660 0.79542 1.32997 1.36665 1.44144 1.44464 2.33272 2.42624 2.98130 3.09928 3.33763 3.92565 4.07286 4.11423 4.31930 4.51460 4.63461 4.83610 4.92061 5.06140 5.17275 5.34832 5.41031 5.73247 6.04080 6.41036 6.77518 7.31613 8.88868 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.009458 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.994601 B = 2959.680377 C = 3820.658662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.025 3.975 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.163 3.837 10 N -0.411 5.411 11 C 0.275 3.725 12 N -0.522 5.522 13 S 0.619 5.381 14 N -0.524 5.524 15 C 0.077 3.923 16 Cl 0.026 6.974 17 C 0.007 3.993 18 C -0.155 4.155 19 C -0.127 4.127 20 H 0.267 0.733 21 H 0.062 0.938 22 H -0.003 1.003 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.773 -5.835 -0.867 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.173 4.173 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.171 1.171 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.038 3.962 10 N -0.132 5.132 11 C 0.007 3.993 12 N -0.363 5.363 13 S 0.657 5.343 14 N -0.367 5.367 15 C -0.132 4.132 16 Cl 0.053 6.947 17 C -0.101 4.101 18 C -0.193 4.193 19 C -0.164 4.164 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.015 0.985 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.135 0.865 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.168 -6.522 -1.066 17.466 hybrid contribution -1.497 1.936 0.448 2.488 sum 14.670 -4.587 -0.618 15.383 Atomic orbital electron populations 1.69989 1.07706 1.27977 1.52110 1.25507 0.95339 1.01992 0.94504 0.86162 0.80168 0.80283 0.79371 1.19261 1.20428 1.17052 1.20950 0.89275 0.94100 1.50104 0.92503 1.20537 0.96105 0.82055 0.97537 1.59058 1.01644 1.18758 1.33741 1.21067 0.92486 0.95046 0.90674 1.77160 1.03083 1.29537 1.26540 1.81843 1.12127 1.38425 1.01940 1.71373 1.14592 1.21411 1.29329 1.22377 0.88044 1.06663 0.96127 1.98413 1.70875 1.75211 1.50179 1.22194 1.07420 0.91020 0.89477 1.23065 0.92750 1.00435 1.03090 1.22939 0.95988 0.94097 1.03409 0.92331 0.92005 0.98550 0.89200 0.89733 0.87593 0.86505 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 13.96 21.45 0.30 -55.74 15 2 C 0.03 1.41 5.47 84.66 0.46 1.87 15 3 Si 0.92 42.00 27.47 68.60 1.88 43.89 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.25 -10.59 6.54 99.48 0.65 -9.94 15 7 C -0.51 -27.44 9.29 25.60 0.24 -27.20 15 8 H 0.06 3.39 7.50 -2.91 -0.02 3.37 15 9 C 0.16 7.50 3.48 85.56 0.30 7.80 15 10 N -0.41 -16.79 4.65 -692.51 -3.22 -20.01 15 11 C 0.28 9.93 6.07 132.92 0.81 10.73 15 12 N -0.52 -16.18 9.74 -61.97 -0.60 -16.78 15 13 S 0.62 14.84 24.22 -56.49 -1.37 13.48 15 14 N -0.52 -15.88 11.40 -82.19 -0.94 -16.82 15 15 C 0.08 2.67 7.09 85.03 0.60 3.28 15 16 Cl 0.03 0.92 26.12 -2.72 -0.07 0.85 15 17 C 0.01 0.24 4.19 44.92 0.19 0.43 15 18 C -0.16 -5.23 10.03 30.60 0.31 -4.93 15 19 C -0.13 -3.71 8.82 30.59 0.27 -3.44 15 20 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 21 H 0.06 2.81 3.78 -2.39 -0.01 2.80 15 22 H 0.00 -0.15 7.50 -2.38 -0.02 -0.17 15 23 H 0.09 3.46 8.03 -2.39 -0.02 3.44 15 24 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15 25 H 0.11 3.25 8.14 -2.39 -0.02 3.23 15 26 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 27 H 0.09 2.60 7.71 -2.39 -0.02 2.58 15 Total: -1.00 -60.52 259.99 0.31 -60.22 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.15 Total: 2.38 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.17 Total: -11.46 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -4.46 Total: -109.35 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Atomic # 16 Polarization: 14.84 SS G_CDS: -1.37 Total: 13.48 kcal Atomic # 17 Polarization: 0.92 SS G_CDS: -0.07 Total: 0.85 kcal Total: -60.52 0.31 -60.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042550233.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.154 kcal (2) G-P(sol) polarization free energy of solvation -60.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds