Wall clock time and date at job start Mon Mar 30 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46870 * 180.74628 * 3 2 1 5 5 C 1.52999 * 109.47328 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47328 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47108 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00184 * 269.99848 * 7 6 5 9 9 C 1.50695 * 109.47360 * 270.00092 * 8 7 6 10 10 H 1.08006 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99649 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00424 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46890 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47093 * 120.00042 * 13 11 9 16 16 H 1.48499 * 109.47068 * 240.00303 * 13 11 9 17 17 C 1.39678 * 119.99677 * 90.00277 * 7 6 5 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47115 * 60.75128 * 3 2 1 24 24 H 1.08995 * 109.47699 * 300.74377 * 3 2 1 25 25 H 1.08999 * 109.47425 * 59.99884 * 4 3 2 26 26 H 1.09005 * 109.47279 * 299.99756 * 4 3 2 27 27 H 1.08995 * 109.47254 * 59.99959 * 5 4 3 28 28 H 1.09000 * 109.47175 * 300.00242 * 5 4 3 29 29 H 1.08995 * 109.46987 * 59.99795 * 6 5 4 30 30 H 1.09000 * 109.47190 * 300.00233 * 6 5 4 31 31 H 1.08994 * 109.46748 * 30.00133 * 8 7 6 32 32 H 1.09004 * 109.46919 * 150.00058 * 8 7 6 33 33 H 0.97006 * 120.00477 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 35 35 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 36 36 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 38 38 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1172 1.4433 0.0188 5 6 4.6472 1.4441 0.0181 6 6 5.1565 2.8868 0.0363 7 7 6.6215 2.8875 0.0363 8 6 7.3540 2.8719 1.3049 9 6 7.6045 4.2872 1.7578 10 1 7.2535 5.1155 1.1601 11 6 8.2817 4.5248 2.9350 12 7 8.7096 3.5161 3.6625 13 14 8.5916 6.2791 3.4967 14 1 8.0132 7.2247 2.5086 15 1 7.9535 6.4951 4.8201 16 1 10.0540 6.5122 3.6083 17 6 7.3198 2.9031 -1.1733 18 6 8.7090 2.9033 -1.1751 19 6 9.3964 2.9182 -2.3728 20 6 8.7033 2.9324 -3.5694 21 6 7.3204 2.9323 -3.5712 22 6 6.6268 2.9174 -2.3771 23 1 2.9715 -0.5013 -0.8967 24 1 2.9716 -0.5245 0.8832 25 1 2.7537 1.9454 0.9154 26 1 2.7537 1.9685 -0.8645 27 1 5.0104 0.9423 -0.8786 28 1 5.0112 0.9188 0.9011 29 1 4.7933 3.3890 0.9328 30 1 4.7925 3.4117 -0.8469 31 1 6.7652 2.3483 2.0580 32 1 8.3067 2.3602 1.1680 33 1 9.1857 3.6831 4.4910 34 1 9.2508 2.8963 -0.2409 35 1 10.4764 2.9187 -2.3750 36 1 9.2433 2.9437 -4.5047 37 1 6.7822 2.9430 -4.5075 38 1 5.5468 2.9177 -2.3792 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044295878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:22 Heat of formation + Delta-G solvation = 25.459043 kcal Electronic energy + Delta-G solvation = -18282.217154 eV Core-core repulsion = 15509.415132 eV Total energy + Delta-G solvation = -2772.802022 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.29532 -38.14301 -37.34084 -35.53827 -34.49326 -31.85374 -30.98325 -30.28991 -28.01670 -25.54756 -24.34373 -22.79975 -22.17322 -21.06961 -18.58146 -18.44210 -18.11040 -16.84786 -16.53975 -16.29611 -15.84699 -15.24822 -15.05994 -14.86047 -14.55944 -14.33821 -14.08284 -14.04882 -13.66852 -13.18446 -13.09947 -13.07091 -12.79334 -12.59174 -12.42271 -12.20388 -12.08527 -11.98312 -11.87060 -11.62622 -11.41488 -11.21655 -10.59891 -10.41677 -9.59485 -8.32715 -7.74625 -6.32119 0.77446 0.99716 1.37140 1.39918 1.50828 1.82208 1.87821 2.37019 2.66512 3.10682 3.15653 3.26300 4.07345 4.09492 4.23070 4.34414 4.42959 4.47076 4.57187 4.76252 4.80667 4.84049 4.86977 4.89608 4.96556 5.08148 5.19803 5.20460 5.29826 5.38215 5.45848 5.55807 5.66887 5.77654 5.84596 5.96539 6.14101 6.30267 6.58938 6.66459 6.91485 7.05193 7.40046 8.86827 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.006051 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.604513 B = 4625.879908 C = 6490.965391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.239 3.761 3 C -0.020 4.020 4 C -0.105 4.105 5 C -0.124 4.124 6 C 0.121 3.879 7 N -0.621 5.621 8 C 0.269 3.731 9 C -0.538 4.538 10 H 0.047 0.953 11 C 0.015 3.985 12 N -0.925 5.925 13 Si 0.955 3.045 14 H -0.272 1.272 15 H -0.276 1.276 16 H -0.279 1.279 17 C 0.215 3.785 18 C -0.222 4.222 19 C -0.084 4.084 20 C -0.200 4.200 21 C -0.074 4.074 22 C -0.215 4.215 23 H 0.137 0.863 24 H 0.127 0.873 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.014 0.986 32 H 0.009 0.991 33 H 0.266 0.734 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -4.848 -11.537 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.078 4.078 3 C -0.060 4.060 4 C -0.144 4.144 5 C -0.163 4.163 6 C -0.002 4.002 7 N -0.327 5.327 8 C 0.148 3.852 9 C -0.577 4.577 10 H 0.065 0.935 11 C -0.184 4.184 12 N -0.565 5.565 13 Si 0.780 3.220 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.205 1.205 17 C 0.110 3.890 18 C -0.245 4.245 19 C -0.103 4.103 20 C -0.220 4.220 21 C -0.093 4.093 22 C -0.238 4.238 23 H 0.155 0.845 24 H 0.145 0.855 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.824 -4.894 -11.161 13.967 hybrid contribution 0.946 0.960 1.097 1.738 sum -5.877 -3.934 -10.064 12.301 Atomic orbital electron populations 1.81245 1.15246 1.10802 1.11579 1.29893 0.95845 0.91124 0.90900 1.19554 0.78728 0.99636 1.08095 1.21380 0.94305 0.95099 1.03660 1.21885 0.94822 0.96593 1.02963 1.21459 0.79228 0.97459 1.02100 1.46973 1.05136 1.77378 1.03246 1.18712 0.91073 0.94917 0.80535 1.21851 1.35976 0.93717 1.06185 0.93483 1.25685 0.95289 1.00843 0.96575 1.70028 1.39218 1.32210 1.15073 0.85555 0.77917 0.80334 0.78159 1.19651 1.20165 1.20519 1.18188 0.91380 0.92642 0.86768 1.20840 0.93594 1.11537 0.98496 1.21057 0.99832 0.97337 0.92045 1.21066 0.94801 1.08558 0.97561 1.21157 0.94209 0.96273 0.97612 1.20852 1.00194 1.12088 0.90661 0.84517 0.85511 0.91556 0.90101 0.90484 0.92354 0.92447 0.90165 0.96807 0.97347 0.92534 0.88846 0.85792 0.84582 0.83616 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.44 18.54 20.00 0.37 -13.07 16 2 C 0.24 4.48 15.43 89.44 1.38 5.86 16 3 C -0.02 -0.23 5.70 28.79 0.16 -0.06 16 4 C -0.10 -1.58 5.17 30.59 0.16 -1.43 16 5 C -0.12 -2.66 5.54 30.59 0.17 -2.49 16 6 C 0.12 3.62 5.16 86.38 0.45 4.06 16 7 N -0.62 -24.50 2.59 -701.65 -1.82 -26.32 16 8 C 0.27 13.28 4.91 85.63 0.42 13.70 16 9 C -0.54 -29.24 9.39 25.60 0.24 -29.00 16 10 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16 11 C 0.02 0.84 5.46 84.65 0.46 1.30 16 12 N -0.93 -52.96 13.29 21.45 0.28 -52.68 16 13 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 C 0.21 8.10 6.55 38.21 0.25 8.35 16 18 C -0.22 -8.90 9.20 22.40 0.21 -8.70 16 19 C -0.08 -2.75 10.04 22.25 0.22 -2.53 16 20 C -0.20 -5.45 10.04 22.29 0.22 -5.23 16 21 C -0.07 -1.91 10.04 22.25 0.22 -1.69 16 22 C -0.22 -6.41 9.21 22.40 0.21 -6.20 16 23 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 30 H 0.08 2.09 6.20 -2.39 -0.01 2.08 16 31 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 32 H 0.01 0.46 6.20 -2.39 -0.01 0.45 16 33 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 34 H 0.09 4.36 6.15 -2.91 -0.02 4.35 16 35 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.14 3.35 6.14 -2.91 -0.02 3.33 16 Total: -1.00 -67.08 327.09 6.68 -60.40 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.04 Total: 10.28 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.77 Total: -24.05 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -1.16 Total: -92.06 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.08 6.68 -60.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044295878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.861 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds