Wall clock time and date at job start Mon Mar 30 2020 07:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86794 * 120.00509 * 2 1 4 4 H 1.48501 * 109.47117 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47276 * 120.00041 * 3 2 1 6 6 H 1.48496 * 109.47374 * 240.00316 * 3 2 1 7 7 C 1.39903 * 119.99741 * 180.27748 * 2 1 3 8 8 H 1.08003 * 120.00186 * 160.42260 * 7 2 1 9 9 C 1.40977 * 119.99992 * 340.42781 * 7 2 1 10 10 C 1.41555 * 120.31065 * 143.43471 * 9 7 2 11 11 N 1.38820 * 120.20886 * 359.95962 * 10 9 7 12 12 C 1.38533 * 119.58003 * 179.97438 * 10 9 7 13 13 C 1.38392 * 120.20716 * 0.02997 * 12 10 9 14 14 Br 1.89106 * 119.67969 * 179.97438 * 13 12 10 15 15 C 1.38857 * 120.64188 * 359.97438 * 13 12 10 16 16 C 1.37745 * 120.41039 * 359.69416 * 15 13 12 17 17 F 1.35105 * 120.10968 * 180.30140 * 16 15 13 18 18 H 0.97004 * 119.99428 * 359.72024 * 1 2 3 19 19 H 0.96999 * 119.99617 * 359.97438 * 11 10 9 20 20 H 0.96995 * 120.00245 * 179.97438 * 11 10 9 21 21 H 1.08003 * 119.89432 * 179.97438 * 12 10 9 22 22 H 1.07998 * 119.79776 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6176 0.0000 4 1 1.2784 2.7464 0.0006 5 1 3.0971 1.6962 1.2125 6 1 3.0970 1.6963 -1.2125 7 6 2.0086 -1.2116 -0.0059 8 1 3.0418 -1.2372 -0.3194 9 6 1.3648 -2.3992 0.3974 10 6 1.6527 -3.6238 -0.2517 11 7 2.5715 -3.6640 -1.2915 12 6 1.0116 -4.7817 0.1573 13 6 0.0950 -4.7414 1.1933 14 35 -0.7720 -6.3309 1.7389 15 6 -0.1943 -3.5450 1.8361 16 6 0.4330 -2.3794 1.4552 17 9 0.1515 -1.2199 2.0889 18 1 -0.4849 0.8401 0.0041 19 1 3.0182 -2.8512 -1.5757 20 1 2.7668 -4.5048 -1.7339 21 1 1.2272 -5.7188 -0.3347 22 1 -0.9122 -3.5291 2.6428 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044699958.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:31 Heat of formation + Delta-G solvation = -28.886936 kcal Electronic energy + Delta-G solvation = -12076.444287 eV Core-core repulsion = 9591.579955 eV Total energy + Delta-G solvation = -2484.864332 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -46.98245 -37.80351 -33.81424 -33.24612 -30.52328 -28.75687 -27.65936 -24.79431 -21.19990 -20.61290 -17.48589 -16.30290 -16.12310 -15.07274 -14.32945 -13.88428 -13.79609 -13.72670 -12.80181 -11.97580 -11.78707 -11.59652 -11.32481 -11.11949 -10.78260 -10.52613 -10.22584 -9.70487 -9.45334 -9.15000 -8.84095 -7.27721 -6.88487 -6.58896 -4.38451 2.45298 2.71431 2.77916 3.04116 3.06959 3.11511 3.91600 4.49476 5.00775 5.26968 5.91421 6.19351 6.30917 6.73627 6.91690 7.07420 7.20928 7.35212 7.50995 7.88364 8.22179 8.44552 8.64842 8.80731 8.88882 10.15884 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.046597 B = 0.007231 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.758284 B = 3871.086535 C = 4348.288472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.051 3.949 10 C 0.154 3.846 11 N -0.875 5.875 12 C -0.167 4.167 13 C -0.126 4.126 14 Br -0.105 7.105 15 C -0.144 4.144 16 C 0.059 3.941 17 F -0.138 7.138 18 H 0.284 0.716 19 H 0.396 0.604 20 H 0.382 0.618 21 H 0.104 0.896 22 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -6.363 0.291 6.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.099 0.901 9 C 0.044 3.956 10 C 0.050 3.950 11 N -0.416 5.416 12 C -0.193 4.193 13 C -0.207 4.207 14 Br -0.021 7.021 15 C -0.166 4.166 16 C 0.036 3.964 17 F -0.117 7.117 18 H 0.095 0.905 19 H 0.225 0.775 20 H 0.208 0.792 21 H 0.122 0.878 22 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.263 -6.722 0.548 6.749 hybrid contribution 0.559 1.308 -0.322 1.459 sum 0.823 -5.413 0.227 5.480 Atomic orbital electron populations 1.69783 1.07675 1.29964 1.32508 1.25755 0.94652 1.01104 0.92713 0.86333 0.80094 0.80383 0.79761 1.20343 1.18842 1.19184 1.19008 0.98492 0.91072 1.41059 0.90068 1.17199 0.94539 0.92059 0.91758 1.17470 0.94040 0.92983 0.90493 1.41863 1.48796 1.11698 1.39274 1.19810 1.02233 0.96326 1.00882 1.20156 1.06270 0.89228 1.05008 1.96374 1.79815 1.34536 1.91390 1.20269 1.02792 0.91122 1.02412 1.17208 1.03451 0.80275 0.95465 1.91336 1.92581 1.47527 1.80210 0.90500 0.77471 0.79158 0.87813 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.29 11.12 55.55 0.62 -19.68 14 2 C 0.08 1.94 4.52 -17.32 -0.08 1.86 14 3 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 14 4 H -0.28 -5.63 7.11 56.52 0.40 -5.23 14 5 H -0.26 -5.44 7.11 56.52 0.40 -5.04 14 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.47 -11.75 8.12 -37.92 -0.31 -12.05 14 8 H 0.08 1.90 7.14 -52.48 -0.37 1.52 14 9 C 0.05 1.28 5.41 -106.56 -0.58 0.71 14 10 C 0.15 3.46 6.78 -83.32 -0.57 2.89 14 11 N -0.88 -16.12 8.98 32.70 0.29 -15.83 14 12 C -0.17 -3.56 9.59 -39.42 -0.38 -3.94 14 13 C -0.13 -2.76 6.24 -39.30 -0.25 -3.00 14 14 Br -0.10 -1.91 33.68 -68.01 -2.29 -4.20 14 15 C -0.14 -3.37 9.72 -39.53 -0.38 -3.76 14 16 C 0.06 1.53 6.67 -38.72 -0.26 1.27 14 17 F -0.14 -3.71 14.27 2.25 0.03 -3.68 14 18 H 0.28 6.88 8.30 -40.82 -0.34 6.54 14 19 H 0.40 7.13 7.27 -40.82 -0.30 6.84 14 20 H 0.38 5.79 8.83 -40.82 -0.36 5.43 14 21 H 0.10 1.97 8.06 -52.48 -0.42 1.55 14 22 H 0.11 2.37 8.06 -52.49 -0.42 1.95 14 LS Contribution 223.68 15.07 3.37 3.37 Total: -1.00 -26.91 223.68 -6.81 -33.73 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -1.01 Total: 8.70 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.79 Total: -16.02 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.91 Total: -35.51 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.03 Total: -3.68 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 35 Polarization: -1.91 SS G_CDS: -2.29 Total: -4.20 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -26.91 -6.81 -33.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044699958.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.841 kcal (2) G-P(sol) polarization free energy of solvation -26.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds