Wall clock time and date at job start Mon Mar 30 2020 08:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00252 * 2 1 4 4 C 1.50702 * 109.46844 * 66.04486 * 3 2 1 5 5 H 1.08004 * 120.00050 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00041 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99739 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99844 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47472 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46955 * 120.00393 * 8 6 4 11 11 H 1.48501 * 109.46805 * 239.99881 * 8 6 4 12 12 C 1.39755 * 110.99987 * 236.04558 * 2 1 3 13 13 C 1.38892 * 120.06716 * 63.95763 * 12 2 1 14 14 C 1.38119 * 119.96248 * 180.02562 * 13 12 2 15 15 C 1.38283 * 120.10479 * 359.97438 * 14 13 12 16 16 C 1.38385 * 120.13978 * 0.02562 * 15 14 13 17 17 Cl 1.73601 * 119.97684 * 179.97438 * 16 15 14 18 18 C 1.38324 * 120.03996 * 359.71761 * 16 15 14 19 19 Cl 1.73599 * 120.05517 * 180.27561 * 18 16 15 20 20 H 1.09000 * 109.46807 * 183.95307 * 1 2 3 21 21 H 1.08997 * 109.46913 * 303.94937 * 1 2 3 22 22 H 1.09005 * 109.47092 * 63.95447 * 1 2 3 23 23 H 1.08996 * 109.47298 * 186.04234 * 3 2 1 24 24 H 1.08998 * 109.47027 * 306.04989 * 3 2 1 25 25 H 0.97003 * 119.99679 * 180.02562 * 7 6 4 26 26 H 1.08004 * 120.02405 * 359.97438 * 13 12 2 27 27 H 1.08000 * 119.95048 * 180.02562 * 14 13 12 28 28 H 1.08000 * 119.92692 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0488 6 6 2.0277 3.3491 1.5290 7 7 2.7129 4.0015 0.6155 8 14 1.5839 4.1863 3.1388 9 1 0.8166 3.2437 3.9920 10 1 2.8259 4.5928 3.8442 11 1 0.7570 5.3879 2.8602 12 6 1.9699 -0.7287 -1.0822 13 6 1.7265 -0.3014 -2.3812 14 6 2.2221 -1.0235 -3.4492 15 6 2.9607 -2.1713 -3.2274 16 6 3.2057 -2.6010 -1.9349 17 17 4.1330 -4.0429 -1.6613 18 6 2.7168 -1.8794 -0.8609 19 17 3.0299 -2.4142 0.7607 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3633 0.5739 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0797 1.3443 -0.1082 24 1 1.5611 1.9273 -0.8309 25 1 2.9882 4.9173 0.7778 26 1 1.1495 0.5946 -2.5562 27 1 2.0331 -0.6908 -4.4591 28 1 3.3465 -2.7340 -4.0646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821305.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:55 Heat of formation + Delta-G solvation = 17.345778 kcal Electronic energy + Delta-G solvation = -14850.825633 eV Core-core repulsion = 12146.563257 eV Total energy + Delta-G solvation = -2704.262376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59206 -36.83191 -35.98233 -35.72254 -32.63371 -30.42157 -29.58297 -27.27794 -25.13691 -22.89591 -22.30690 -20.40690 -17.25496 -16.40807 -15.80821 -15.51997 -14.86369 -14.25108 -14.05703 -13.93897 -13.19006 -13.10791 -12.16029 -11.92860 -11.78591 -11.55111 -11.40859 -11.10996 -11.02943 -10.92351 -10.69093 -10.61250 -10.31729 -10.05640 -9.34867 -8.53162 -8.51411 -8.36773 -7.59125 -6.09280 -4.10968 1.17907 1.30054 2.06539 2.60880 3.28269 3.36121 3.40842 3.64669 4.34935 4.59715 5.02596 5.12561 5.26625 5.31325 5.53077 5.61436 6.00245 6.07162 6.07671 6.33920 6.48898 6.61375 6.68484 7.13927 7.19272 7.73593 7.91060 8.04034 8.44071 8.95669 9.53339 11.01634 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.006010 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.384892 B = 4657.557601 C = 5057.647036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.507 5.507 3 C 0.200 3.800 4 C -0.508 4.508 5 H 0.067 0.933 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.136 3.864 13 C -0.135 4.135 14 C -0.099 4.099 15 C -0.118 4.118 16 C -0.030 4.030 17 Cl -0.062 7.062 18 C -0.017 4.017 19 Cl -0.036 7.036 20 H 0.049 0.951 21 H 0.085 0.915 22 H 0.019 0.981 23 H 0.032 0.968 24 H -0.002 1.002 25 H 0.262 0.738 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 -12.142 -7.413 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.229 5.229 3 C 0.077 3.923 4 C -0.547 4.547 5 H 0.085 0.915 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.040 3.960 13 C -0.156 4.156 14 C -0.118 4.118 15 C -0.137 4.137 16 C -0.058 4.058 17 Cl -0.033 7.033 18 C -0.046 4.046 19 Cl -0.007 7.007 20 H 0.068 0.932 21 H 0.103 0.897 22 H 0.037 0.963 23 H 0.050 0.950 24 H 0.016 0.984 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.611 -12.347 -6.799 14.108 hybrid contribution -0.223 0.870 0.205 0.921 sum -0.834 -11.477 -6.594 13.263 Atomic orbital electron populations 1.22270 0.86424 1.00303 1.01341 1.59878 1.07893 1.18465 1.36616 1.19843 0.95600 0.79521 0.97301 1.21137 1.35153 0.96862 1.01515 0.91492 1.24975 0.95146 0.97286 0.97063 1.69967 1.38120 1.11502 1.34040 0.86417 0.78208 0.79268 0.83404 1.19567 1.20960 1.21088 1.18857 0.94517 0.92068 0.90601 1.21938 1.00657 1.00468 0.92525 1.21031 0.97148 0.94290 0.99344 1.20897 1.00650 0.97848 0.94346 1.20656 1.00205 0.91282 0.93677 1.98357 1.71912 1.36234 1.96818 1.20811 1.01395 0.95984 0.86393 1.98365 1.93999 1.88874 1.19472 0.93242 0.89668 0.96265 0.94984 0.98393 0.92868 0.84732 0.84963 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.20 60.07 0.55 1.36 15 2 N -0.51 -10.75 4.12 -180.30 -0.74 -11.49 15 3 C 0.20 5.06 4.30 -4.98 -0.02 5.04 15 4 C -0.51 -13.88 8.46 -34.44 -0.29 -14.17 15 5 H 0.07 1.81 7.12 -52.48 -0.37 1.44 15 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 7 N -0.90 -26.10 13.29 55.43 0.74 -25.37 15 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 15 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 12 C 0.14 2.54 4.68 -83.74 -0.39 2.15 15 13 C -0.14 -2.20 8.66 -39.38 -0.34 -2.54 15 14 C -0.10 -1.30 10.04 -39.61 -0.40 -1.70 15 15 C -0.12 -1.53 9.83 -39.51 -0.39 -1.92 15 16 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 15 17 Cl -0.06 -0.84 27.96 -51.86 -1.45 -2.29 15 18 C -0.02 -0.30 6.34 -39.28 -0.25 -0.55 15 19 Cl -0.04 -0.65 27.44 -51.86 -1.42 -2.07 15 20 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 21 H 0.08 1.67 6.76 -51.93 -0.35 1.32 15 22 H 0.02 0.33 7.34 -51.93 -0.38 -0.05 15 23 H 0.03 0.89 8.06 -51.93 -0.42 0.48 15 24 H 0.00 -0.04 7.48 -51.93 -0.39 -0.43 15 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 26 H 0.13 2.17 7.14 -52.48 -0.37 1.80 15 27 H 0.13 1.32 8.06 -52.49 -0.42 0.89 15 28 H 0.14 1.37 8.06 -52.49 -0.42 0.94 15 LS Contribution 273.41 15.07 4.12 4.12 Total: -1.00 -28.87 273.41 -8.34 -37.21 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -2.69 Total: -4.84 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.87 Total: -11.56 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.01 Total: -36.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -2.87 Total: -4.37 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.87 -8.34 -37.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821305.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.558 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds