Wall clock time and date at job start Mon Mar 30 2020 08:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00252 * 2 1 4 4 C 1.50702 * 109.46844 * 66.04486 * 3 2 1 5 5 H 1.08004 * 120.00050 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00041 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99739 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99844 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47472 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46955 * 120.00393 * 8 6 4 11 11 H 1.48501 * 109.46805 * 239.99881 * 8 6 4 12 12 C 1.39755 * 110.99987 * 236.04558 * 2 1 3 13 13 C 1.38892 * 120.06716 * 63.95763 * 12 2 1 14 14 C 1.38119 * 119.96248 * 180.02562 * 13 12 2 15 15 C 1.38283 * 120.10479 * 359.97438 * 14 13 12 16 16 C 1.38385 * 120.13978 * 0.02562 * 15 14 13 17 17 Cl 1.73601 * 119.97684 * 179.97438 * 16 15 14 18 18 C 1.38324 * 120.03996 * 359.71761 * 16 15 14 19 19 Cl 1.73599 * 120.05517 * 180.27561 * 18 16 15 20 20 H 1.09000 * 109.46807 * 183.95307 * 1 2 3 21 21 H 1.08997 * 109.46913 * 303.94937 * 1 2 3 22 22 H 1.09005 * 109.47092 * 63.95447 * 1 2 3 23 23 H 1.08996 * 109.47298 * 186.04234 * 3 2 1 24 24 H 1.08998 * 109.47027 * 306.04989 * 3 2 1 25 25 H 0.97003 * 119.99679 * 180.02562 * 7 6 4 26 26 H 1.08004 * 120.02405 * 359.97438 * 13 12 2 27 27 H 1.08000 * 119.95048 * 180.02562 * 14 13 12 28 28 H 1.08000 * 119.92692 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0488 6 6 2.0277 3.3491 1.5290 7 7 2.7129 4.0015 0.6155 8 14 1.5839 4.1863 3.1388 9 1 0.8166 3.2437 3.9920 10 1 2.8259 4.5928 3.8442 11 1 0.7570 5.3879 2.8602 12 6 1.9699 -0.7287 -1.0822 13 6 1.7265 -0.3014 -2.3812 14 6 2.2221 -1.0235 -3.4492 15 6 2.9607 -2.1713 -3.2274 16 6 3.2057 -2.6010 -1.9349 17 17 4.1330 -4.0429 -1.6613 18 6 2.7168 -1.8794 -0.8609 19 17 3.0299 -2.4142 0.7607 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3633 0.5739 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0797 1.3443 -0.1082 24 1 1.5611 1.9273 -0.8309 25 1 2.9882 4.9173 0.7778 26 1 1.1495 0.5946 -2.5562 27 1 2.0331 -0.6908 -4.4591 28 1 3.3465 -2.7340 -4.0646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821305.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:55 Heat of formation + Delta-G solvation = 1.191141 kcal Electronic energy + Delta-G solvation = -14851.526150 eV Core-core repulsion = 12146.563257 eV Total energy + Delta-G solvation = -2704.962893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90361 -38.15277 -37.31589 -37.05101 -34.68627 -31.62795 -30.98887 -29.15568 -26.77348 -24.51228 -23.61334 -21.91765 -18.78290 -18.17494 -17.14998 -16.90146 -16.64750 -15.70542 -15.61668 -15.15291 -14.69830 -14.61612 -14.04907 -13.33203 -13.10621 -12.95517 -12.87238 -12.72917 -12.61818 -12.43458 -12.28345 -12.05751 -11.94300 -11.66453 -11.35484 -10.63789 -9.73821 -9.65188 -9.25911 -8.21735 -6.31124 -0.02685 0.07828 0.88175 1.33169 1.40924 1.42683 1.55532 2.38924 2.45601 3.08219 3.13161 3.93757 3.94182 4.18085 4.24111 4.37994 4.58790 4.62356 4.93953 5.02262 5.02697 5.19950 5.22196 5.33945 5.54348 5.67780 6.04201 6.14197 6.66580 6.82890 7.38126 8.89563 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.006010 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.384892 B = 4657.557601 C = 5057.647036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.515 5.515 3 C 0.222 3.778 4 C -0.522 4.522 5 H 0.065 0.935 6 C 0.006 3.994 7 N -0.932 5.932 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.101 3.899 13 C -0.146 4.146 14 C -0.083 4.083 15 C -0.102 4.102 16 C -0.036 4.036 17 Cl -0.048 7.048 18 C -0.035 4.035 19 Cl -0.051 7.051 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.027 0.973 23 H -0.004 1.004 24 H -0.020 1.020 25 H 0.265 0.735 26 H 0.129 0.871 27 H 0.173 0.827 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -13.016 -8.485 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.236 5.236 3 C 0.098 3.902 4 C -0.560 4.560 5 H 0.083 0.917 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.005 3.995 13 C -0.166 4.166 14 C -0.102 4.102 15 C -0.121 4.121 16 C -0.064 4.064 17 Cl -0.019 7.019 18 C -0.064 4.064 19 Cl -0.022 7.022 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.046 0.954 23 H 0.014 0.986 24 H -0.003 1.003 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.191 0.809 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.876 -13.248 -7.877 15.438 hybrid contribution -0.112 1.039 0.419 1.126 sum -0.989 -12.209 -7.459 14.342 Atomic orbital electron populations 1.22247 0.85225 1.01428 1.01035 1.59643 1.09116 1.16031 1.38835 1.19365 0.93210 0.81828 0.95812 1.21443 1.34998 0.97346 1.02248 0.91713 1.25843 0.94931 0.97988 1.00495 1.70082 1.39169 1.11933 1.36041 0.85363 0.78001 0.78288 0.79149 1.18787 1.20724 1.20199 1.18944 0.96648 0.93007 0.90867 1.21985 1.01278 1.00847 0.92515 1.21445 0.95221 0.93312 1.00195 1.21383 0.98882 0.97390 0.94404 1.20857 1.00052 0.91593 0.93882 1.98363 1.71447 1.35247 1.96878 1.20935 1.02330 0.96586 0.86513 1.98349 1.94152 1.88944 1.20717 0.91092 0.91205 0.95434 0.98632 1.00276 0.92643 0.85327 0.80922 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.77 9.20 127.69 1.17 2.94 15 2 N -0.51 -22.32 4.12 -724.33 -2.98 -25.31 15 3 C 0.22 11.65 4.30 85.56 0.37 12.02 15 4 C -0.52 -29.18 8.46 25.60 0.22 -28.97 15 5 H 0.06 3.57 7.12 -2.91 -0.02 3.55 15 6 C 0.01 0.33 5.46 84.66 0.46 0.79 15 7 N -0.93 -55.27 13.29 21.45 0.28 -54.99 15 8 Si 0.97 43.99 29.54 68.60 2.03 46.01 15 9 H -0.26 -11.57 7.11 99.48 0.71 -10.87 15 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 12 C 0.10 3.79 4.68 38.21 0.18 3.96 15 13 C -0.15 -4.60 8.66 22.40 0.19 -4.41 15 14 C -0.08 -1.91 10.04 22.25 0.22 -1.68 15 15 C -0.10 -2.27 9.83 22.32 0.22 -2.05 15 16 C -0.04 -1.01 6.32 22.33 0.14 -0.87 15 17 Cl -0.05 -1.21 27.96 -2.72 -0.08 -1.29 15 18 C -0.03 -1.22 6.34 22.46 0.14 -1.08 15 19 Cl -0.05 -1.83 27.44 -2.72 -0.07 -1.90 15 20 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.07 2.79 6.76 -2.39 -0.02 2.78 15 22 H 0.03 0.96 7.34 -2.38 -0.02 0.95 15 23 H 0.00 -0.26 8.06 -2.39 -0.02 -0.28 15 24 H -0.02 -1.12 7.48 -2.39 -0.02 -1.14 15 25 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 26 H 0.13 4.14 7.14 -2.91 -0.02 4.12 15 27 H 0.17 2.59 8.06 -2.91 -0.02 2.56 15 28 H 0.17 2.57 8.06 -2.91 -0.02 2.54 15 Total: -1.00 -63.35 273.41 3.67 -59.69 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: 1.17 Total: -2.87 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 3.32 Total: -19.34 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.70 Total: -80.30 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.15 Total: -3.19 kcal Total: -63.35 3.67 -59.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821305.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.877 kcal (2) G-P(sol) polarization free energy of solvation -63.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds