Wall clock time and date at job start Mon Mar 30 2020 07:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47278 * 2 1 4 4 H 1.09005 * 109.47070 * 305.84026 * 3 2 1 5 5 C 1.50700 * 109.46946 * 185.84598 * 3 2 1 6 6 H 1.08002 * 119.99666 * 243.39632 * 5 3 2 7 7 C 1.37875 * 120.00052 * 63.40114 * 5 3 2 8 8 N 1.31522 * 119.99389 * 196.04111 * 7 5 3 9 9 Si 1.86797 * 120.00111 * 16.04178 * 7 5 3 10 10 H 1.48496 * 109.47025 * 92.76398 * 9 7 5 11 11 H 1.48499 * 109.46894 * 212.76076 * 9 7 5 12 12 H 1.48493 * 109.47418 * 332.76079 * 9 7 5 13 13 N 1.46894 * 109.47396 * 65.84209 * 3 2 1 14 14 C 1.46901 * 111.00047 * 258.57294 * 13 3 2 15 15 C 1.50699 * 109.47335 * 175.30824 * 14 13 3 16 16 C 1.34241 * 126.50388 * 260.00052 * 15 14 13 17 17 N 1.36827 * 109.92812 * 179.97438 * 16 15 14 18 18 H 0.97006 * 125.05517 * 179.97438 * 17 16 15 19 19 C 1.37680 * 109.88063 * 0.02562 * 17 16 15 20 20 C 1.39129 * 133.51423 * 179.97438 * 19 17 16 21 21 C 1.37746 * 119.78239 * 180.02562 * 20 19 17 22 22 C 1.38831 * 120.66666 * 0.02562 * 21 20 19 23 23 C 1.36626 * 120.52852 * 359.97438 * 22 21 20 24 24 C 1.39634 * 119.76407 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47242 * 295.84501 * 1 2 3 26 26 H 1.09003 * 109.46673 * 55.84833 * 1 2 3 27 27 H 1.09003 * 109.47297 * 175.84306 * 1 2 3 28 28 H 1.08995 * 109.47238 * 239.99442 * 2 1 3 29 29 H 1.09003 * 109.46526 * 119.99754 * 2 1 3 30 30 H 0.96999 * 119.99652 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00188 * 134.62089 * 13 3 2 32 32 H 1.09000 * 109.47400 * 55.31115 * 14 13 3 33 33 H 1.09001 * 109.47163 * 295.31012 * 14 13 3 34 34 H 1.07997 * 125.03219 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.10530 * 0.32642 * 20 19 17 36 36 H 1.08002 * 119.66790 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.74003 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.12320 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5938 1.9856 -0.8331 5 6 3.5401 1.4448 -0.1447 6 1 4.1586 1.8359 0.6496 7 6 4.1228 0.9478 -1.2912 8 7 5.4049 0.6546 -1.3031 9 14 3.0916 0.6911 -2.8274 10 1 3.1669 1.9029 -3.6823 11 1 3.6089 -0.4793 -3.5809 12 1 1.6792 0.4455 -2.4401 13 7 1.6689 2.0931 1.2636 14 6 0.4999 2.9643 1.0837 15 6 0.0792 3.5226 2.4187 16 6 -0.9267 3.0786 3.1889 17 7 -1.0091 3.8318 4.3282 18 1 -1.6585 3.7009 5.0369 19 6 -0.0340 4.8037 4.3186 20 6 0.3211 5.8133 5.2077 21 6 1.3732 6.6502 4.9078 22 6 2.0846 6.4976 3.7254 23 6 1.7530 5.5130 2.8381 24 6 0.6906 4.6527 3.1224 25 1 -0.3634 0.4480 0.9249 26 1 -0.3633 0.5769 -0.8505 27 1 -0.3634 -1.0250 -0.0745 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8150 0.3053 -2.1097 31 1 2.4474 2.6073 1.6478 32 1 -0.3205 2.3879 0.6562 33 1 0.7571 3.7833 0.4121 34 1 -1.5747 2.2498 2.9452 35 1 -0.2234 5.9372 6.1321 36 1 1.6470 7.4335 5.5991 37 1 2.9067 7.1625 3.5051 38 1 2.3106 5.4005 1.9200 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:39 Heat of formation + Delta-G solvation = 54.808574 kcal Electronic energy + Delta-G solvation = -18768.006662 eV Core-core repulsion = 15996.477331 eV Total energy + Delta-G solvation = -2771.529331 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.06367 -36.86001 -36.40758 -33.07798 -31.87789 -30.77142 -29.26648 -28.94730 -27.09633 -23.95516 -22.68434 -22.29923 -21.60589 -19.62930 -19.15251 -17.69294 -16.74015 -16.20580 -15.31649 -15.27516 -14.49253 -13.98184 -13.85864 -13.71694 -13.47599 -13.07312 -12.87095 -12.59183 -12.15789 -12.06552 -11.64578 -11.54884 -11.50665 -11.09182 -10.81303 -10.76815 -10.56239 -10.13725 -9.79229 -9.50631 -9.27340 -9.09533 -8.39535 -8.05926 -7.51284 -7.27096 -6.10248 -4.04705 1.28872 1.78379 2.88471 3.25516 3.29529 3.39319 3.42992 4.07797 4.43495 4.87248 4.98221 5.12862 5.20345 5.26767 5.41699 5.52499 5.61614 5.75847 5.90034 6.04491 6.08519 6.10022 6.12551 6.22608 6.31821 6.38244 6.63682 6.72161 6.77311 6.80861 6.91084 6.99711 7.08600 7.10996 7.33131 7.51571 7.66143 7.70919 8.07097 8.45304 8.67993 9.00083 9.56466 11.02738 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026172 B = 0.005360 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.591691 B = 5222.683878 C = 5979.049443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C 0.191 3.809 4 H 0.003 0.997 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.674 5.674 14 C 0.126 3.874 15 C -0.146 4.146 16 C 0.052 3.948 17 N -0.599 5.599 18 H 0.411 0.589 19 C 0.094 3.906 20 C -0.137 4.137 21 C -0.103 4.103 22 C -0.152 4.152 23 C -0.063 4.063 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.263 0.737 31 H 0.340 0.660 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.167 0.833 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 8.239 10.066 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C 0.082 3.918 4 H 0.021 0.979 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.690 3.310 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.306 5.306 14 C -0.004 4.004 15 C -0.153 4.153 16 C -0.074 4.074 17 N -0.202 5.202 18 H 0.248 0.752 19 C -0.013 4.013 20 C -0.158 4.158 21 C -0.122 4.122 22 C -0.172 4.172 23 C -0.081 4.081 24 C -0.103 4.103 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.185 0.815 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.642 7.566 10.230 18.655 hybrid contribution -0.264 0.418 -1.021 1.134 sum -13.906 7.984 9.209 18.491 Atomic orbital electron populations 1.21879 0.98769 0.99345 1.00555 1.21844 0.92610 0.99449 1.00702 1.19459 0.95384 0.90757 0.86225 0.97918 1.21250 0.89561 1.42293 1.03885 0.90689 1.24899 0.94738 0.94083 0.98782 1.70002 1.11718 1.42701 1.28328 0.87201 0.82421 0.77754 0.83657 1.20871 1.21392 1.17393 1.60585 1.07773 1.33115 1.29107 1.20339 0.95412 0.94323 0.90343 1.20411 0.98320 0.97685 0.98908 1.21559 1.01354 0.97642 0.86802 1.41678 1.30030 1.28485 1.20058 0.75245 1.18249 0.92526 0.93295 0.97280 1.19937 1.00506 0.96426 0.98924 1.20738 0.95356 0.98847 0.97240 1.20598 1.01416 0.99975 0.95174 1.20389 0.95002 0.93437 0.99308 1.19170 0.98042 0.98199 0.94910 0.92632 0.94393 0.94770 0.93312 0.92322 0.92714 0.84189 0.90906 0.95429 0.81542 0.86776 0.86201 0.86261 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.74 37.16 0.32 -2.36 16 2 C -0.11 -2.38 4.85 -26.73 -0.13 -2.51 16 3 C 0.19 4.47 1.75 -68.87 -0.12 4.35 16 4 H 0.00 0.08 6.35 -51.93 -0.33 -0.25 16 5 C -0.53 -14.78 9.03 -34.44 -0.31 -15.09 16 6 H 0.08 2.26 7.67 -52.49 -0.40 1.86 16 7 C 0.08 2.23 5.31 -17.82 -0.09 2.13 16 8 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 9 Si 0.86 21.16 25.76 -169.99 -4.38 16.78 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.77 5.49 56.52 0.31 -5.46 16 13 N -0.67 -13.92 6.07 -109.22 -0.66 -14.58 16 14 C 0.13 2.20 5.56 -4.98 -0.03 2.17 16 15 C -0.15 -2.31 5.87 -102.71 -0.60 -2.91 16 16 C 0.05 0.68 11.73 -16.73 -0.20 0.48 16 17 N -0.60 -6.95 6.07 -10.65 -0.06 -7.02 16 18 H 0.41 3.29 8.96 -40.82 -0.37 2.93 16 19 C 0.09 1.29 7.28 -83.99 -0.61 0.68 16 20 C -0.14 -1.65 10.08 -39.43 -0.40 -2.05 16 21 C -0.10 -1.21 10.01 -39.54 -0.40 -1.60 16 22 C -0.15 -1.99 9.97 -39.94 -0.40 -2.39 16 23 C -0.06 -0.96 10.05 -39.64 -0.40 -1.35 16 24 C -0.10 -1.56 6.35 -105.13 -0.67 -2.23 16 25 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.13 4.88 -51.93 -0.25 0.88 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.34 7.38 7.96 -39.29 -0.31 7.07 16 32 H 0.07 1.20 6.01 -51.93 -0.31 0.89 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -31.25 307.81 -9.08 -40.32 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.35 Total: 8.80 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -4.03 Total: -22.67 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.05 Total: -47.87 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.38 Total: 16.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.25 -9.08 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.130 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds