Wall clock time and date at job start Mon Mar 30 2020 07:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47278 * 2 1 4 4 H 1.09005 * 109.47070 * 305.84026 * 3 2 1 5 5 C 1.50700 * 109.46946 * 185.84598 * 3 2 1 6 6 H 1.08002 * 119.99666 * 243.39632 * 5 3 2 7 7 C 1.37875 * 120.00052 * 63.40114 * 5 3 2 8 8 N 1.31522 * 119.99389 * 196.04111 * 7 5 3 9 9 Si 1.86797 * 120.00111 * 16.04178 * 7 5 3 10 10 H 1.48496 * 109.47025 * 92.76398 * 9 7 5 11 11 H 1.48499 * 109.46894 * 212.76076 * 9 7 5 12 12 H 1.48493 * 109.47418 * 332.76079 * 9 7 5 13 13 N 1.46894 * 109.47396 * 65.84209 * 3 2 1 14 14 C 1.46901 * 111.00047 * 258.57294 * 13 3 2 15 15 C 1.50699 * 109.47335 * 175.30824 * 14 13 3 16 16 C 1.34241 * 126.50388 * 260.00052 * 15 14 13 17 17 N 1.36827 * 109.92812 * 179.97438 * 16 15 14 18 18 H 0.97006 * 125.05517 * 179.97438 * 17 16 15 19 19 C 1.37680 * 109.88063 * 0.02562 * 17 16 15 20 20 C 1.39129 * 133.51423 * 179.97438 * 19 17 16 21 21 C 1.37746 * 119.78239 * 180.02562 * 20 19 17 22 22 C 1.38831 * 120.66666 * 0.02562 * 21 20 19 23 23 C 1.36626 * 120.52852 * 359.97438 * 22 21 20 24 24 C 1.39634 * 119.76407 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47242 * 295.84501 * 1 2 3 26 26 H 1.09003 * 109.46673 * 55.84833 * 1 2 3 27 27 H 1.09003 * 109.47297 * 175.84306 * 1 2 3 28 28 H 1.08995 * 109.47238 * 239.99442 * 2 1 3 29 29 H 1.09003 * 109.46526 * 119.99754 * 2 1 3 30 30 H 0.96999 * 119.99652 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00188 * 134.62089 * 13 3 2 32 32 H 1.09000 * 109.47400 * 55.31115 * 14 13 3 33 33 H 1.09001 * 109.47163 * 295.31012 * 14 13 3 34 34 H 1.07997 * 125.03219 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.10530 * 0.32642 * 20 19 17 36 36 H 1.08002 * 119.66790 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.74003 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.12320 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5938 1.9856 -0.8331 5 6 3.5401 1.4448 -0.1447 6 1 4.1586 1.8359 0.6496 7 6 4.1228 0.9478 -1.2912 8 7 5.4049 0.6546 -1.3031 9 14 3.0916 0.6911 -2.8274 10 1 3.1669 1.9029 -3.6823 11 1 3.6089 -0.4793 -3.5809 12 1 1.6792 0.4455 -2.4401 13 7 1.6689 2.0931 1.2636 14 6 0.4999 2.9643 1.0837 15 6 0.0792 3.5226 2.4187 16 6 -0.9267 3.0786 3.1889 17 7 -1.0091 3.8318 4.3282 18 1 -1.6585 3.7009 5.0369 19 6 -0.0340 4.8037 4.3186 20 6 0.3211 5.8133 5.2077 21 6 1.3732 6.6502 4.9078 22 6 2.0846 6.4976 3.7254 23 6 1.7530 5.5130 2.8381 24 6 0.6906 4.6527 3.1224 25 1 -0.3634 0.4480 0.9249 26 1 -0.3633 0.5769 -0.8505 27 1 -0.3634 -1.0250 -0.0745 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8150 0.3053 -2.1097 31 1 2.4474 2.6073 1.6478 32 1 -0.3205 2.3879 0.6562 33 1 0.7571 3.7833 0.4121 34 1 -1.5747 2.2498 2.9452 35 1 -0.2234 5.9372 6.1321 36 1 1.6470 7.4335 5.5991 37 1 2.9067 7.1625 3.5051 38 1 2.3106 5.4005 1.9200 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:34 Heat of formation + Delta-G solvation = 34.149491 kcal Electronic energy + Delta-G solvation = -18768.902507 eV Core-core repulsion = 15996.477331 eV Total energy + Delta-G solvation = -2772.425176 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07757 -38.29186 -37.67633 -34.76499 -33.66239 -32.07928 -30.43986 -30.08265 -28.75731 -25.54230 -24.00960 -23.68259 -22.60621 -21.37855 -20.40940 -19.01942 -18.46285 -17.31286 -17.00716 -16.28478 -15.87856 -15.64149 -15.14251 -14.91383 -14.78708 -14.60024 -14.51801 -13.95467 -13.66789 -13.47939 -13.12447 -12.92099 -12.69490 -12.56707 -12.48615 -12.30853 -12.00509 -11.65079 -11.53662 -11.18514 -11.05277 -10.58721 -10.48465 -9.07365 -9.02856 -8.48709 -8.32126 -6.31277 0.27346 0.75887 1.34004 1.37579 1.48787 1.80487 2.34008 2.35397 3.01715 3.03812 3.81431 3.88511 4.01426 4.21131 4.27191 4.46585 4.50103 4.53782 4.57667 4.68123 4.71805 4.80640 4.85876 4.95269 5.00401 5.09245 5.25802 5.29353 5.35311 5.45911 5.59519 5.62896 5.75613 5.82437 5.87582 5.91174 6.05866 6.30879 6.52684 6.72600 6.82929 6.88611 7.34297 8.84592 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026172 B = 0.005360 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.591691 B = 5222.683878 C = 5979.049443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.196 3.804 4 H 0.002 0.998 5 C -0.539 4.539 6 H 0.031 0.969 7 C 0.021 3.979 8 N -0.940 5.940 9 Si 0.928 3.072 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.223 1.223 13 N -0.672 5.672 14 C 0.134 3.866 15 C -0.191 4.191 16 C 0.077 3.923 17 N -0.583 5.583 18 H 0.431 0.569 19 C 0.079 3.921 20 C -0.131 4.131 21 C -0.107 4.107 22 C -0.153 4.153 23 C -0.098 4.098 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.265 0.735 31 H 0.327 0.673 32 H 0.088 0.912 33 H 0.011 0.989 34 H 0.200 0.800 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.712 8.351 11.151 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C 0.086 3.914 4 H 0.020 0.980 5 C -0.577 4.577 6 H 0.050 0.950 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.752 3.248 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.146 1.146 13 N -0.301 5.301 14 C 0.005 3.995 15 C -0.199 4.199 16 C -0.050 4.050 17 N -0.187 5.187 18 H 0.271 0.729 19 C -0.028 4.028 20 C -0.151 4.151 21 C -0.125 4.125 22 C -0.172 4.172 23 C -0.117 4.117 24 C -0.132 4.132 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.106 0.894 33 H 0.029 0.971 34 H 0.217 0.783 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.151 0.849 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.066 7.691 11.355 21.894 hybrid contribution 0.844 0.462 -1.209 1.545 sum -16.222 8.153 10.146 20.798 Atomic orbital electron populations 1.21782 0.95029 1.01216 1.01626 1.21748 0.95938 0.97534 0.99438 1.19349 0.92250 0.92280 0.87482 0.98025 1.21568 0.91982 1.41374 1.02751 0.95038 1.25778 0.95891 0.93885 1.02159 1.70140 1.13904 1.44535 1.29393 0.86152 0.82010 0.77657 0.79007 1.20577 1.21095 1.14564 1.60638 1.08241 1.33917 1.27341 1.20267 0.94162 0.93377 0.91734 1.20299 1.00817 0.99467 0.99271 1.21966 0.99894 0.97156 0.86016 1.41654 1.29650 1.27339 1.20105 0.72869 1.18488 0.92984 0.94356 0.97002 1.20370 1.00174 0.95112 0.99494 1.21139 0.94885 0.99530 0.96993 1.20878 1.01754 0.99259 0.95345 1.20432 0.96159 0.95404 0.99725 1.19438 0.98771 0.98694 0.96303 0.91313 0.93639 0.92468 0.94542 0.93759 0.92565 0.85626 0.89363 0.97133 0.78330 0.83443 0.82926 0.84866 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 8.74 71.98 0.63 -3.95 16 2 C -0.11 -4.66 4.85 30.59 0.15 -4.51 16 3 C 0.20 9.26 1.75 44.17 0.08 9.33 16 4 H 0.00 0.10 6.35 -2.38 -0.02 0.09 16 5 C -0.54 -31.27 9.03 25.60 0.23 -31.03 16 6 H 0.03 2.04 7.67 -2.91 -0.02 2.02 16 7 C 0.02 1.26 5.31 84.65 0.45 1.71 16 8 N -0.94 -59.41 13.96 21.45 0.30 -59.11 16 9 Si 0.93 44.02 25.76 68.60 1.77 45.79 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.22 -9.54 5.49 99.48 0.55 -8.99 16 13 N -0.67 -28.29 6.07 -499.48 -3.03 -31.33 16 14 C 0.13 4.67 5.56 85.56 0.48 5.15 16 15 C -0.19 -5.93 5.87 -18.63 -0.11 -6.04 16 16 C 0.08 1.80 11.73 83.00 0.97 2.77 16 17 N -0.58 -11.73 6.07 -187.61 -1.14 -12.87 16 18 H 0.43 5.18 8.96 -92.70 -0.83 4.35 16 19 C 0.08 2.04 7.28 39.03 0.28 2.32 16 20 C -0.13 -2.78 10.08 22.37 0.23 -2.55 16 21 C -0.11 -2.27 10.01 22.30 0.22 -2.04 16 22 C -0.15 -3.98 9.97 22.03 0.22 -3.76 16 23 C -0.10 -3.15 10.05 22.23 0.22 -2.93 16 24 C -0.13 -4.05 6.35 -20.20 -0.13 -4.18 16 25 H 0.07 2.07 6.66 -2.39 -0.02 2.06 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.64 4.88 -2.39 -0.01 1.63 16 29 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.33 15.14 7.96 -89.70 -0.71 14.42 16 32 H 0.09 2.75 6.01 -2.39 -0.01 2.73 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.10 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -71.04 307.81 1.19 -69.85 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.63 Total: 27.38 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 3.92 Total: -39.72 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -3.87 Total: -103.31 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.77 Total: 45.79 kcal Total: -71.04 1.19 -69.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.000 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds