Wall clock time and date at job start Mon Mar 30 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47003 * 2 1 4 4 C 1.46900 * 110.99922 * 293.80371 * 3 2 1 5 5 C 1.53004 * 109.46704 * 295.95296 * 4 3 2 6 6 C 1.47202 * 109.46826 * 185.42833 * 5 4 3 7 7 N 5.37632 * 94.59222 * 300.57329 * 2 1 3 8 8 C 1.46894 * 111.00277 * 57.75507 * 3 2 1 9 9 H 1.09000 * 109.47404 * 296.04750 * 8 3 2 10 10 C 1.50693 * 109.47259 * 176.04644 * 8 3 2 11 11 H 1.08003 * 120.00392 * 125.82406 * 10 8 3 12 12 C 1.37878 * 120.00278 * 305.54657 * 10 8 3 13 13 N 1.31516 * 119.99523 * 9.94798 * 12 10 8 14 14 Si 1.86790 * 120.00539 * 189.94599 * 12 10 8 15 15 H 1.48511 * 109.47076 * 90.00111 * 14 12 10 16 16 H 1.48499 * 109.47503 * 209.99991 * 14 12 10 17 17 H 1.48504 * 109.47075 * 330.00484 * 14 12 10 18 18 C 1.50700 * 109.46898 * 56.04485 * 8 3 2 19 19 C 1.38247 * 119.99927 * 213.01718 * 18 8 3 20 20 C 1.38234 * 119.99743 * 179.80941 * 19 18 8 21 21 C 1.38234 * 120.00077 * 0.40348 * 20 19 18 22 22 C 1.38238 * 120.00086 * 359.85415 * 21 20 19 23 23 C 1.38232 * 120.00318 * 33.29864 * 18 8 3 24 24 H 1.09005 * 109.47165 * 183.78638 * 1 2 3 25 25 H 1.09002 * 109.47511 * 303.78784 * 1 2 3 26 26 H 1.09002 * 109.47025 * 63.78939 * 1 2 3 27 27 H 1.09000 * 109.47097 * 239.99369 * 2 1 3 28 28 H 1.09005 * 109.46589 * 119.99684 * 2 1 3 29 29 H 1.08997 * 109.47477 * 55.94746 * 4 3 2 30 30 H 1.08995 * 109.47263 * 175.95279 * 4 3 2 31 31 H 1.09003 * 109.47282 * 305.42647 * 5 4 3 32 32 H 1.08997 * 109.47434 * 65.43539 * 5 4 3 33 33 H 0.97003 * 120.00261 * 179.97438 * 13 12 10 34 34 H 1.07998 * 119.99743 * 0.02562 * 19 18 8 35 35 H 1.07999 * 119.99816 * 180.22830 * 20 19 18 36 36 H 1.08004 * 120.00037 * 179.82878 * 21 20 19 37 37 H 1.08005 * 120.00154 * 179.97438 * 22 21 20 38 38 H 1.08005 * 119.99654 * 359.97102 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6732 2.0658 -1.2548 5 6 2.3894 1.3813 -2.4208 6 6 2.1472 2.1402 -3.6587 7 7 1.9605 2.7258 -4.6140 8 6 1.5053 2.1252 1.1599 9 1 0.4201 2.2002 1.0910 10 6 2.1041 3.5080 1.1791 11 1 1.4609 4.3745 1.2225 12 6 3.4733 3.6668 1.1471 13 7 4.2496 2.6335 0.9036 14 14 4.2258 5.3495 1.4495 15 1 4.4892 5.5204 2.9010 16 1 5.5016 5.4636 0.6982 17 1 3.2847 6.4024 0.9899 18 6 1.8792 1.3982 2.4258 19 6 1.0333 1.4334 3.5187 20 6 1.3744 0.7633 4.6786 21 6 2.5653 0.0648 4.7485 22 6 3.4136 0.0339 3.6575 23 6 3.0706 0.7009 2.4963 24 1 -0.3634 -1.0255 0.0679 25 1 -0.3634 0.5715 0.8541 26 1 -0.3633 0.4539 -0.9220 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5956 2.0151 -1.4102 30 1 1.9837 3.1091 -1.1998 31 1 3.4601 1.3464 -2.2196 32 1 2.0080 0.3668 -2.5363 33 1 5.2129 2.7453 0.8807 34 1 0.1044 1.9817 3.4651 35 1 0.7119 0.7877 5.5311 36 1 2.8331 -0.4566 5.6557 37 1 4.3442 -0.5115 3.7122 38 1 3.7334 0.6767 1.6438 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:29 Heat of formation + Delta-G solvation = 66.031027 kcal Electronic energy + Delta-G solvation = -19672.639285 eV Core-core repulsion = 16901.596597 eV Total energy + Delta-G solvation = -2771.042689 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.83126 -37.10628 -35.95982 -32.98805 -31.47398 -30.30475 -29.72460 -28.44823 -26.19888 -23.55711 -23.01939 -21.36017 -20.58968 -19.01302 -17.11970 -16.38836 -15.57402 -15.38780 -14.76947 -14.25874 -14.17460 -13.97206 -13.37585 -13.34603 -12.72344 -12.54194 -12.32068 -12.23224 -11.90160 -11.79113 -11.77408 -11.45524 -11.14762 -10.95157 -10.82513 -10.72596 -10.38257 -10.32610 -10.04870 -9.89696 -9.46374 -9.24295 -8.52302 -7.86809 -7.45596 -6.91508 -5.96827 -4.14952 2.41740 2.51816 3.14937 3.18645 3.27909 3.35086 3.38813 4.37932 4.41668 4.89444 5.14164 5.37611 5.56774 5.75867 5.76981 5.78268 5.87195 5.91258 5.96876 6.02747 6.13686 6.31209 6.36476 6.50279 6.56466 6.63419 6.71512 6.82102 6.93566 6.98725 7.10046 7.22447 7.43890 7.61203 7.75745 7.88962 7.96252 8.05253 8.21044 8.36606 8.54426 8.93516 9.51624 10.96105 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.009298 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.799290 B = 3010.591331 C = 4179.700859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.035 3.965 3 N -0.483 5.483 4 C 0.079 3.921 5 C -0.028 4.028 6 C 0.224 3.776 7 N -0.467 5.467 8 C 0.248 3.752 9 H 0.005 0.995 10 C -0.532 4.532 11 H 0.057 0.943 12 C 0.092 3.908 13 N -0.823 5.823 14 Si 0.875 3.125 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.028 4.028 19 C -0.136 4.136 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.073 4.073 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.018 0.982 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.257 0.743 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -6.792 1.466 7.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.093 4.093 3 N -0.206 5.206 4 C -0.051 4.051 5 C -0.069 4.069 6 C -0.094 4.094 7 N -0.145 5.145 8 C 0.143 3.857 9 H 0.023 0.977 10 C -0.570 4.570 11 H 0.075 0.925 12 C -0.117 4.117 13 N -0.456 5.456 14 Si 0.703 3.297 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.029 4.029 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.171 4.171 22 C -0.166 4.166 23 C -0.091 4.091 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.214 -5.985 0.037 6.381 hybrid contribution -0.280 0.815 0.823 1.191 sum -2.493 -5.170 0.859 5.803 Atomic orbital electron populations 1.22455 1.00213 1.00820 1.01629 1.22360 0.91453 0.93909 1.01609 1.62324 1.58099 0.99147 1.01003 1.21642 0.94971 1.00488 0.88018 1.19478 1.05261 0.96872 0.85273 1.29528 0.92199 0.93266 0.94379 1.81130 1.10182 1.10300 1.12853 1.18218 0.91633 0.91711 0.84145 0.97700 1.20841 0.91782 0.90284 1.54098 0.92455 1.24837 0.97170 0.95843 0.93834 1.70021 1.03673 1.28665 1.43192 0.86888 0.78894 0.85524 0.78443 1.20708 1.21229 1.20084 1.20279 0.93685 0.92575 0.96400 1.20881 0.99918 1.00701 0.93954 1.20767 0.97310 1.00385 0.97495 1.20808 0.95896 1.02208 0.98144 1.21183 0.98974 1.01732 0.94687 1.21811 0.96075 0.92839 0.98374 0.93669 0.92321 0.93338 0.92253 0.90900 0.96431 0.88760 0.86243 0.88630 0.93320 0.87915 0.88124 0.88316 0.88019 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 9.24 37.16 0.34 -2.55 16 2 C 0.04 0.57 5.33 -3.82 -0.02 0.55 16 3 N -0.48 -9.10 2.53 -229.44 -0.58 -9.68 16 4 C 0.08 1.38 4.56 -3.82 -0.02 1.36 16 5 C -0.03 -0.41 5.44 -29.52 -0.16 -0.57 16 6 C 0.22 3.59 15.43 -20.76 -0.32 3.27 16 7 N -0.47 -8.53 18.54 42.15 0.78 -7.75 16 8 C 0.25 5.30 1.38 -70.02 -0.10 5.20 16 9 H 0.01 0.11 6.33 -51.93 -0.33 -0.21 16 10 C -0.53 -12.82 7.21 -34.44 -0.25 -13.07 16 11 H 0.06 1.43 7.83 -52.48 -0.41 1.02 16 12 C 0.09 2.21 5.17 -17.82 -0.09 2.12 16 13 N -0.82 -19.50 9.20 55.43 0.51 -18.99 16 14 Si 0.87 19.73 29.55 -169.99 -5.02 14.71 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 C -0.03 -0.59 3.86 -104.62 -0.40 -1.00 16 19 C -0.14 -2.68 9.69 -39.58 -0.38 -3.07 16 20 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 21 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 22 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 23 C -0.07 -1.51 6.41 -39.59 -0.25 -1.76 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.97 6.23 -51.93 -0.32 0.65 16 26 H 0.05 0.70 6.65 -51.93 -0.35 0.35 16 27 H 0.06 0.84 6.25 -51.93 -0.32 0.51 16 28 H 0.07 1.27 5.85 -51.93 -0.30 0.97 16 29 H 0.02 0.30 6.38 -51.93 -0.33 -0.03 16 30 H 0.09 1.94 6.80 -51.93 -0.35 1.58 16 31 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 32 H 0.10 1.14 6.64 -51.93 -0.34 0.80 16 33 H 0.26 6.01 8.31 -40.82 -0.34 5.67 16 34 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.16 3.60 5.61 -52.48 -0.29 3.30 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -25.27 306.40 -7.57 -32.84 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.03 Total: 3.00 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.85 Total: -18.75 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.71 Total: -36.41 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -25.27 -7.57 -32.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.870 kcal (2) G-P(sol) polarization free energy of solvation -25.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds