Wall clock time and date at job start Mon Mar 30 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47003 * 2 1 4 4 C 1.46900 * 110.99922 * 293.80371 * 3 2 1 5 5 C 1.53004 * 109.46704 * 295.95296 * 4 3 2 6 6 C 1.47202 * 109.46826 * 185.42833 * 5 4 3 7 7 N 5.37632 * 94.59222 * 300.57329 * 2 1 3 8 8 C 1.46894 * 111.00277 * 57.75507 * 3 2 1 9 9 H 1.09000 * 109.47404 * 296.04750 * 8 3 2 10 10 C 1.50693 * 109.47259 * 176.04644 * 8 3 2 11 11 H 1.08003 * 120.00392 * 125.82406 * 10 8 3 12 12 C 1.37878 * 120.00278 * 305.54657 * 10 8 3 13 13 N 1.31516 * 119.99523 * 9.94798 * 12 10 8 14 14 Si 1.86790 * 120.00539 * 189.94599 * 12 10 8 15 15 H 1.48511 * 109.47076 * 90.00111 * 14 12 10 16 16 H 1.48499 * 109.47503 * 209.99991 * 14 12 10 17 17 H 1.48504 * 109.47075 * 330.00484 * 14 12 10 18 18 C 1.50700 * 109.46898 * 56.04485 * 8 3 2 19 19 C 1.38247 * 119.99927 * 213.01718 * 18 8 3 20 20 C 1.38234 * 119.99743 * 179.80941 * 19 18 8 21 21 C 1.38234 * 120.00077 * 0.40348 * 20 19 18 22 22 C 1.38238 * 120.00086 * 359.85415 * 21 20 19 23 23 C 1.38232 * 120.00318 * 33.29864 * 18 8 3 24 24 H 1.09005 * 109.47165 * 183.78638 * 1 2 3 25 25 H 1.09002 * 109.47511 * 303.78784 * 1 2 3 26 26 H 1.09002 * 109.47025 * 63.78939 * 1 2 3 27 27 H 1.09000 * 109.47097 * 239.99369 * 2 1 3 28 28 H 1.09005 * 109.46589 * 119.99684 * 2 1 3 29 29 H 1.08997 * 109.47477 * 55.94746 * 4 3 2 30 30 H 1.08995 * 109.47263 * 175.95279 * 4 3 2 31 31 H 1.09003 * 109.47282 * 305.42647 * 5 4 3 32 32 H 1.08997 * 109.47434 * 65.43539 * 5 4 3 33 33 H 0.97003 * 120.00261 * 179.97438 * 13 12 10 34 34 H 1.07998 * 119.99743 * 0.02562 * 19 18 8 35 35 H 1.07999 * 119.99816 * 180.22830 * 20 19 18 36 36 H 1.08004 * 120.00037 * 179.82878 * 21 20 19 37 37 H 1.08005 * 120.00154 * 179.97438 * 22 21 20 38 38 H 1.08005 * 119.99654 * 359.97102 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6732 2.0658 -1.2548 5 6 2.3894 1.3813 -2.4208 6 6 2.1472 2.1402 -3.6587 7 7 1.9605 2.7258 -4.6140 8 6 1.5053 2.1252 1.1599 9 1 0.4201 2.2002 1.0910 10 6 2.1041 3.5080 1.1791 11 1 1.4609 4.3745 1.2225 12 6 3.4733 3.6668 1.1471 13 7 4.2496 2.6335 0.9036 14 14 4.2258 5.3495 1.4495 15 1 4.4892 5.5204 2.9010 16 1 5.5016 5.4636 0.6982 17 1 3.2847 6.4024 0.9899 18 6 1.8792 1.3982 2.4258 19 6 1.0333 1.4334 3.5187 20 6 1.3744 0.7633 4.6786 21 6 2.5653 0.0648 4.7485 22 6 3.4136 0.0339 3.6575 23 6 3.0706 0.7009 2.4963 24 1 -0.3634 -1.0255 0.0679 25 1 -0.3634 0.5715 0.8541 26 1 -0.3633 0.4539 -0.9220 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5956 2.0151 -1.4102 30 1 1.9837 3.1091 -1.1998 31 1 3.4601 1.3464 -2.2196 32 1 2.0080 0.3668 -2.5363 33 1 5.2129 2.7453 0.8807 34 1 0.1044 1.9817 3.4651 35 1 0.7119 0.7877 5.5311 36 1 2.8331 -0.4566 5.6557 37 1 4.3442 -0.5115 3.7122 38 1 3.7334 0.6767 1.6438 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:29 Heat of formation + Delta-G solvation = 55.270745 kcal Electronic energy + Delta-G solvation = -19673.105886 eV Core-core repulsion = 16901.596597 eV Total energy + Delta-G solvation = -2771.509290 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31877 -38.51434 -37.35076 -34.68740 -32.90706 -31.76561 -31.19450 -29.87909 -27.80762 -24.96904 -24.59756 -22.82915 -22.03451 -20.51881 -18.49647 -18.00553 -17.06923 -16.91020 -16.34509 -15.71476 -15.60608 -15.51997 -14.81834 -14.71266 -14.13977 -13.98554 -13.85820 -13.69917 -13.33459 -13.29578 -13.12626 -12.91766 -12.73250 -12.54954 -12.44729 -12.25987 -11.90082 -11.71646 -11.56239 -11.42769 -10.93149 -10.87153 -10.36232 -9.35682 -8.99335 -8.40027 -7.77914 -6.00471 0.92041 1.04281 1.43568 1.49877 1.53334 1.83006 1.88867 2.52852 3.09123 3.33665 3.44399 3.89392 4.30246 4.41955 4.44928 4.48259 4.51859 4.62037 4.67727 4.76957 4.81809 4.88533 5.04364 5.09672 5.19571 5.29115 5.35066 5.37295 5.47260 5.58665 5.64979 5.74143 5.86002 5.96851 6.12562 6.30786 6.43674 6.64088 6.67058 6.71428 7.02523 7.23649 7.65658 9.09958 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.009298 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.799290 B = 3010.591331 C = 4179.700859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.037 3.963 3 N -0.491 5.491 4 C 0.082 3.918 5 C -0.013 4.013 6 C 0.244 3.756 7 N -0.505 5.505 8 C 0.254 3.746 9 H -0.007 1.007 10 C -0.549 4.549 11 H 0.035 0.965 12 C 0.070 3.930 13 N -0.822 5.822 14 Si 0.909 3.091 15 H -0.289 1.289 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.045 4.045 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.085 4.085 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.255 0.745 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -8.646 2.137 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.091 4.091 3 N -0.213 5.213 4 C -0.048 4.048 5 C -0.053 4.053 6 C -0.072 4.072 7 N -0.184 5.184 8 C 0.148 3.852 9 H 0.010 0.990 10 C -0.587 4.587 11 H 0.053 0.947 12 C -0.138 4.138 13 N -0.455 5.455 14 Si 0.738 3.262 15 H -0.215 1.215 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.047 4.047 19 C -0.171 4.171 20 C -0.159 4.159 21 C -0.168 4.168 22 C -0.172 4.172 23 C -0.103 4.103 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.086 -7.847 0.702 8.150 hybrid contribution -0.359 1.363 0.686 1.567 sum -2.446 -6.484 1.388 7.068 Atomic orbital electron populations 1.22361 0.99240 1.01783 1.00963 1.22386 0.92223 0.92138 1.02366 1.62140 1.58456 1.00214 1.00490 1.21527 0.95547 0.98918 0.88809 1.19434 1.05067 0.97834 0.83000 1.29727 0.91020 0.92360 0.94098 1.81153 1.11506 1.11455 1.14268 1.18026 0.90659 0.90906 0.85608 0.98982 1.20930 0.91881 0.91249 1.54665 0.94666 1.25088 0.97387 0.97097 0.94203 1.70079 1.03401 1.28687 1.43300 0.86379 0.78252 0.84004 0.77615 1.21530 1.20973 1.20970 1.20287 0.94390 0.93482 0.96498 1.21077 1.00127 1.01410 0.94531 1.21113 0.97871 0.99259 0.97610 1.21181 0.95205 1.01503 0.98864 1.21442 0.99980 1.01400 0.94371 1.21673 0.95887 0.93934 0.98825 0.91602 0.94459 0.92740 0.89476 0.92099 0.96002 0.92309 0.86037 0.85063 0.93511 0.87749 0.85274 0.85098 0.86118 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.23 9.24 71.98 0.66 -4.57 16 2 C 0.04 1.14 5.33 86.30 0.46 1.60 16 3 N -0.49 -18.24 2.53 -879.82 -2.23 -20.47 16 4 C 0.08 2.84 4.56 86.30 0.39 3.23 16 5 C -0.01 -0.35 5.44 28.79 0.16 -0.20 16 6 C 0.24 7.55 15.43 89.44 1.38 8.93 16 7 N -0.51 -18.14 18.54 20.01 0.37 -17.77 16 8 C 0.25 11.01 1.38 43.42 0.06 11.07 16 9 H -0.01 -0.33 6.33 -2.39 -0.02 -0.34 16 10 C -0.55 -27.19 7.21 25.60 0.18 -27.00 16 11 H 0.04 1.84 7.83 -2.91 -0.02 1.81 16 12 C 0.07 3.42 5.17 84.65 0.44 3.86 16 13 N -0.82 -38.98 9.20 21.45 0.20 -38.78 16 14 Si 0.91 40.96 29.55 68.60 2.03 42.98 16 15 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 C -0.05 -1.91 3.86 -19.86 -0.08 -1.98 16 19 C -0.15 -5.92 9.69 22.27 0.22 -5.71 16 20 C -0.14 -4.73 10.05 22.27 0.22 -4.51 16 21 C -0.15 -4.86 10.05 22.27 0.22 -4.64 16 22 C -0.15 -5.49 10.05 22.27 0.22 -5.27 16 23 C -0.08 -3.46 6.41 22.27 0.14 -3.31 16 24 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.04 1.21 6.23 -2.39 -0.01 1.20 16 26 H 0.05 1.46 6.65 -2.39 -0.02 1.45 16 27 H 0.09 2.17 6.25 -2.39 -0.01 2.15 16 28 H 0.06 2.04 5.85 -2.38 -0.01 2.03 16 29 H 0.02 0.74 6.38 -2.39 -0.02 0.72 16 30 H 0.06 2.46 6.80 -2.39 -0.02 2.45 16 31 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.13 2.63 6.64 -2.39 -0.02 2.62 16 33 H 0.25 11.89 8.31 -92.71 -0.77 11.12 16 34 H 0.10 3.89 8.06 -2.91 -0.02 3.86 16 35 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.15 6.43 5.61 -2.91 -0.02 6.41 16 Total: -1.00 -54.50 306.40 6.12 -48.39 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.06 Total: 14.15 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 4.69 Total: -28.51 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.66 Total: -77.01 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -54.50 6.12 -48.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.656 kcal (2) G-P(sol) polarization free energy of solvation -54.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds