Wall clock time and date at job start Mon Mar 30 2020 07:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47447 * 2 1 4 4 C 1.47195 * 109.46980 * 120.00861 * 2 1 3 5 5 N 2.60802 * 109.47134 * 120.00690 * 2 1 3 6 6 C 1.53001 * 109.46701 * 240.00434 * 2 1 3 7 7 N 1.46897 * 109.47361 * 65.00114 * 6 2 1 8 8 C 1.46902 * 110.99946 * 66.04503 * 7 6 2 9 9 C 1.46901 * 111.00395 * 189.99913 * 7 6 2 10 10 H 1.09001 * 109.47068 * 299.99834 * 9 7 6 11 11 C 1.50697 * 109.47226 * 59.99751 * 9 7 6 12 12 H 1.08000 * 119.99826 * 54.81767 * 11 9 7 13 13 C 1.37877 * 120.00346 * 234.81713 * 11 9 7 14 14 N 1.31510 * 120.00058 * 183.01482 * 13 11 9 15 15 Si 1.86798 * 119.99845 * 3.02090 * 13 11 9 16 16 H 1.48502 * 109.47584 * 85.65241 * 15 13 11 17 17 H 1.48504 * 109.47202 * 205.65439 * 15 13 11 18 18 H 1.48500 * 109.46988 * 325.65219 * 15 13 11 19 19 C 1.50699 * 109.47276 * 180.02562 * 9 7 6 20 20 C 1.38231 * 119.99755 * 313.05421 * 19 9 7 21 21 C 1.38241 * 119.99901 * 179.78707 * 20 19 9 22 22 C 1.38238 * 119.99662 * 0.44645 * 21 20 19 23 23 C 1.38228 * 119.99952 * 359.80848 * 22 21 20 24 24 C 1.38229 * 120.00538 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46534 * 299.99591 * 1 2 3 26 26 H 1.08997 * 109.46929 * 59.99280 * 1 2 3 27 27 H 1.08999 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47064 * 185.00099 * 6 2 1 29 29 H 1.09000 * 109.47677 * 304.99920 * 6 2 1 30 30 H 1.09003 * 109.47370 * 59.99864 * 8 7 6 31 31 H 1.09000 * 109.47509 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.46787 * 300.00195 * 8 7 6 33 33 H 0.96997 * 119.99779 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.00480 * 0.02562 * 20 19 9 35 35 H 1.08001 * 120.00037 * 180.27384 * 21 20 19 36 36 H 1.08002 * 119.99564 * 179.82960 * 22 21 20 37 37 H 1.08004 * 119.99875 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.00363 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0207 -0.6941 1.2017 5 7 2.3994 -1.2297 2.1293 6 6 2.0400 -0.7212 -1.2493 7 7 1.6514 0.0376 -2.4457 8 6 2.3341 1.3375 -2.4894 9 6 1.9123 -0.7355 -3.6672 10 1 2.9756 -0.9671 -3.7304 11 6 1.1204 -2.0171 -3.6295 12 1 0.0509 -1.9868 -3.4826 13 6 1.7613 -3.2282 -3.7826 14 7 1.0635 -4.3426 -3.8090 15 14 3.6206 -3.2862 -3.9521 16 1 4.2405 -3.3059 -2.6028 17 1 4.0120 -4.5113 -4.6945 18 1 4.0876 -2.0875 -4.6939 19 6 1.5026 0.0735 -4.8708 20 6 0.2780 0.7145 -4.8885 21 6 -0.0960 1.4602 -5.9908 22 6 0.7508 1.5574 -7.0791 23 6 1.9732 0.9122 -7.0635 24 6 2.3491 0.1701 -5.9595 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1263 -0.7995 -1.2057 29 1 1.6054 -1.7197 -1.2954 30 1 3.4127 1.1810 -2.5099 31 1 2.0282 1.8788 -3.3847 32 1 2.0679 1.9176 -1.6058 33 1 1.5143 -5.1946 -3.9171 34 1 -0.3850 0.6358 -4.0396 35 1 -1.0509 1.9646 -6.0028 36 1 0.4574 2.1378 -7.9414 37 1 2.6349 0.9884 -7.9136 38 1 3.3039 -0.3343 -5.9475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:18 Heat of formation + Delta-G solvation = 54.237144 kcal Electronic energy + Delta-G solvation = -19285.492581 eV Core-core repulsion = 16513.938471 eV Total energy + Delta-G solvation = -2771.554110 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.00409 -37.59846 -36.02922 -33.47259 -32.29719 -30.51657 -30.17523 -27.78941 -26.33443 -24.28845 -23.06974 -21.94879 -21.05260 -19.38449 -17.35602 -17.05736 -16.17599 -15.25376 -14.78508 -14.60870 -14.27843 -14.06179 -13.54680 -13.39357 -12.88746 -12.80691 -12.73768 -12.61946 -12.40048 -12.10301 -11.87239 -11.70375 -11.30736 -11.24915 -11.09303 -10.91848 -10.70342 -10.50209 -10.10457 -10.02913 -9.95458 -9.56665 -8.74724 -8.25325 -7.88871 -7.47607 -6.26677 -4.25919 2.06145 2.10798 2.99968 3.03471 3.13588 3.20049 3.24700 4.13583 4.22394 4.48176 4.86416 5.12773 5.20578 5.39679 5.49816 5.50410 5.55254 5.67640 5.82728 5.92090 5.95227 6.10495 6.13766 6.23770 6.24718 6.27035 6.37303 6.50072 6.61824 6.64774 6.74500 6.81014 7.10940 7.15501 7.31490 7.43645 7.72080 7.79608 7.85497 7.95075 8.43943 8.85869 9.34622 10.85014 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.008584 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.153127 B = 3261.117340 C = 4316.126505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.004 3.996 3 H 0.106 0.894 4 C 0.221 3.779 5 N -0.454 5.454 6 C 0.068 3.932 7 N -0.525 5.525 8 C 0.012 3.988 9 C 0.209 3.791 10 H 0.020 0.980 11 C -0.492 4.492 12 H 0.087 0.913 13 C 0.078 3.922 14 N -0.883 5.883 15 Si 0.862 3.138 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.263 1.263 19 C -0.028 4.028 20 C -0.094 4.094 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.125 4.125 24 C -0.135 4.135 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.107 0.893 30 H 0.013 0.987 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.267 0.733 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 11.947 -0.867 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.018 4.018 3 H 0.124 0.876 4 C -0.097 4.097 5 N -0.130 5.130 6 C -0.061 4.061 7 N -0.250 5.250 8 C -0.137 4.137 9 C 0.104 3.896 10 H 0.037 0.963 11 C -0.530 4.530 12 H 0.105 0.895 13 C -0.126 4.126 14 N -0.519 5.519 15 Si 0.690 3.310 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.188 1.188 19 C -0.029 4.029 20 C -0.112 4.112 21 C -0.147 4.147 22 C -0.166 4.166 23 C -0.143 4.143 24 C -0.153 4.153 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.125 0.875 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.607 10.995 0.545 11.025 hybrid contribution 1.840 -0.227 -0.674 1.973 sum 2.447 10.768 -0.129 11.043 Atomic orbital electron populations 1.21669 0.91233 1.03478 1.02552 1.19005 0.98118 0.98414 0.86234 0.87614 1.29421 0.92670 0.93256 0.94331 1.81145 1.09721 1.09714 1.12447 1.21924 0.97156 0.99700 0.87345 1.62208 1.57116 1.03040 1.02596 1.22514 0.95814 0.93483 1.01857 1.18872 0.95363 0.91766 0.83633 0.96259 1.20768 0.96377 0.86772 1.49080 0.89545 1.25060 0.97548 0.95740 0.94264 1.69857 1.35730 0.98010 1.48341 0.87102 0.87051 0.77860 0.79024 1.19950 1.21099 1.18824 1.20248 0.93623 0.92735 0.96334 1.20974 0.96236 0.96167 0.97832 1.21081 0.99040 1.00298 0.94307 1.20874 0.95251 1.01990 0.98469 1.20918 0.96782 0.98765 0.97849 1.21023 0.99940 1.00043 0.94318 0.93358 0.89206 0.91711 0.95747 0.87459 0.96840 0.91436 0.92324 0.92258 0.85592 0.87188 0.87457 0.87370 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.04 37.16 0.34 -1.32 16 2 C 0.00 0.06 2.68 -93.41 -0.25 -0.19 16 3 H 0.11 1.18 6.33 -51.93 -0.33 0.85 16 4 C 0.22 3.48 14.64 -20.76 -0.30 3.17 16 5 N -0.45 -8.17 18.54 42.16 0.78 -7.39 16 6 C 0.07 1.17 4.14 -3.83 -0.02 1.15 16 7 N -0.53 -9.15 3.62 -237.69 -0.86 -10.01 16 8 C 0.01 0.17 8.98 60.07 0.54 0.71 16 9 C 0.21 4.35 1.63 -70.02 -0.11 4.24 16 10 H 0.02 0.43 4.32 -51.93 -0.22 0.21 16 11 C -0.49 -12.20 7.41 -34.44 -0.26 -12.45 16 12 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 13 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 15 Si 0.86 20.06 27.21 -169.99 -4.63 15.43 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.26 -5.82 6.02 56.52 0.34 -5.48 16 19 C -0.03 -0.55 3.48 -104.62 -0.36 -0.92 16 20 C -0.09 -1.67 8.50 -39.58 -0.34 -2.01 16 21 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 22 C -0.15 -2.25 10.05 -39.59 -0.40 -2.65 16 23 C -0.12 -2.03 10.05 -39.59 -0.40 -2.42 16 24 C -0.13 -2.51 9.67 -39.58 -0.38 -2.90 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 1.15 7.75 -51.93 -0.40 0.74 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.11 2.18 6.77 -51.93 -0.35 1.83 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 1.01 6.32 -51.93 -0.33 0.68 16 32 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.13 2.22 7.93 -52.49 -0.42 1.81 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.11 2.04 7.59 -52.49 -0.40 1.64 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -27.96 315.82 -6.97 -34.93 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.36 Total: 2.60 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.44 Total: -16.04 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.69 Total: -41.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.63 Total: 15.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.96 -6.97 -34.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.163 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds