Wall clock time and date at job start Mon Mar 30 2020 07:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47447 * 2 1 4 4 C 1.47195 * 109.46980 * 120.00861 * 2 1 3 5 5 N 2.60802 * 109.47134 * 120.00690 * 2 1 3 6 6 C 1.53001 * 109.46701 * 240.00434 * 2 1 3 7 7 N 1.46897 * 109.47361 * 65.00114 * 6 2 1 8 8 C 1.46902 * 110.99946 * 66.04503 * 7 6 2 9 9 C 1.46901 * 111.00395 * 189.99913 * 7 6 2 10 10 H 1.09001 * 109.47068 * 299.99834 * 9 7 6 11 11 C 1.50697 * 109.47226 * 59.99751 * 9 7 6 12 12 H 1.08000 * 119.99826 * 54.81767 * 11 9 7 13 13 C 1.37877 * 120.00346 * 234.81713 * 11 9 7 14 14 N 1.31510 * 120.00058 * 183.01482 * 13 11 9 15 15 Si 1.86798 * 119.99845 * 3.02090 * 13 11 9 16 16 H 1.48502 * 109.47584 * 85.65241 * 15 13 11 17 17 H 1.48504 * 109.47202 * 205.65439 * 15 13 11 18 18 H 1.48500 * 109.46988 * 325.65219 * 15 13 11 19 19 C 1.50699 * 109.47276 * 180.02562 * 9 7 6 20 20 C 1.38231 * 119.99755 * 313.05421 * 19 9 7 21 21 C 1.38241 * 119.99901 * 179.78707 * 20 19 9 22 22 C 1.38238 * 119.99662 * 0.44645 * 21 20 19 23 23 C 1.38228 * 119.99952 * 359.80848 * 22 21 20 24 24 C 1.38229 * 120.00538 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46534 * 299.99591 * 1 2 3 26 26 H 1.08997 * 109.46929 * 59.99280 * 1 2 3 27 27 H 1.08999 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47064 * 185.00099 * 6 2 1 29 29 H 1.09000 * 109.47677 * 304.99920 * 6 2 1 30 30 H 1.09003 * 109.47370 * 59.99864 * 8 7 6 31 31 H 1.09000 * 109.47509 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.46787 * 300.00195 * 8 7 6 33 33 H 0.96997 * 119.99779 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.00480 * 0.02562 * 20 19 9 35 35 H 1.08001 * 120.00037 * 180.27384 * 21 20 19 36 36 H 1.08002 * 119.99564 * 179.82960 * 22 21 20 37 37 H 1.08004 * 119.99875 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.00363 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0207 -0.6941 1.2017 5 7 2.3994 -1.2297 2.1293 6 6 2.0400 -0.7212 -1.2493 7 7 1.6514 0.0376 -2.4457 8 6 2.3341 1.3375 -2.4894 9 6 1.9123 -0.7355 -3.6672 10 1 2.9756 -0.9671 -3.7304 11 6 1.1204 -2.0171 -3.6295 12 1 0.0509 -1.9868 -3.4826 13 6 1.7613 -3.2282 -3.7826 14 7 1.0635 -4.3426 -3.8090 15 14 3.6206 -3.2862 -3.9521 16 1 4.2405 -3.3059 -2.6028 17 1 4.0120 -4.5113 -4.6945 18 1 4.0876 -2.0875 -4.6939 19 6 1.5026 0.0735 -4.8708 20 6 0.2780 0.7145 -4.8885 21 6 -0.0960 1.4602 -5.9908 22 6 0.7508 1.5574 -7.0791 23 6 1.9732 0.9122 -7.0635 24 6 2.3491 0.1701 -5.9595 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1263 -0.7995 -1.2057 29 1 1.6054 -1.7197 -1.2954 30 1 3.4127 1.1810 -2.5099 31 1 2.0282 1.8788 -3.3847 32 1 2.0679 1.9176 -1.6058 33 1 1.5143 -5.1946 -3.9171 34 1 -0.3850 0.6358 -4.0396 35 1 -1.0509 1.9646 -6.0028 36 1 0.4574 2.1378 -7.9414 37 1 2.6349 0.9884 -7.9136 38 1 3.3039 -0.3343 -5.9475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:10 Heat of formation + Delta-G solvation = 38.692812 kcal Electronic energy + Delta-G solvation = -19286.166634 eV Core-core repulsion = 16513.938471 eV Total energy + Delta-G solvation = -2772.228163 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.39444 -38.90519 -37.41474 -35.03590 -33.98865 -31.87029 -31.48051 -29.38904 -27.61395 -25.70158 -24.58364 -23.27030 -22.37587 -20.88811 -19.09761 -18.49882 -17.51670 -16.67792 -16.35307 -15.96986 -15.70127 -15.40774 -14.94367 -14.84312 -14.61745 -14.19201 -14.07588 -13.94429 -13.70846 -13.55500 -13.22543 -13.01554 -12.91770 -12.54508 -12.41329 -12.32941 -12.02087 -11.96759 -11.77237 -11.50346 -11.38484 -11.33089 -10.72962 -9.56364 -9.27141 -8.93304 -8.30237 -6.30009 0.73224 0.78942 1.25613 1.28621 1.34825 1.69940 1.76424 2.27393 2.81928 3.04518 3.25202 3.56900 3.96928 4.16307 4.25537 4.33178 4.38696 4.42413 4.52111 4.62029 4.70160 4.78116 4.91229 4.95965 5.02810 5.05166 5.13579 5.21623 5.28596 5.36357 5.44816 5.53544 5.58621 5.81302 5.85926 6.04325 6.15575 6.34558 6.44718 6.54475 6.70152 6.81202 7.33765 8.85588 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.008584 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.153127 B = 3261.117340 C = 4316.126505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.018 3.982 3 H 0.146 0.854 4 C 0.240 3.760 5 N -0.494 5.494 6 C 0.070 3.930 7 N -0.522 5.522 8 C 0.013 3.987 9 C 0.215 3.785 10 H 0.007 0.993 11 C -0.473 4.473 12 H 0.048 0.952 13 C 0.026 3.974 14 N -0.937 5.937 15 Si 0.911 3.089 16 H -0.273 1.273 17 H -0.290 1.290 18 H -0.244 1.244 19 C -0.054 4.054 20 C -0.105 4.105 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.155 4.155 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.013 0.987 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.264 0.736 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 15.383 -1.758 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.004 4.004 3 H 0.163 0.837 4 C -0.077 4.077 5 N -0.171 5.171 6 C -0.060 4.060 7 N -0.246 5.246 8 C -0.135 4.135 9 C 0.108 3.892 10 H 0.024 0.976 11 C -0.512 4.512 12 H 0.067 0.933 13 C -0.173 4.173 14 N -0.577 5.577 15 Si 0.737 3.263 16 H -0.199 1.199 17 H -0.217 1.217 18 H -0.168 1.168 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.144 4.144 22 C -0.157 4.157 23 C -0.143 4.143 24 C -0.173 4.173 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.907 14.470 -0.343 14.502 hybrid contribution 1.653 -1.156 -0.452 2.067 sum 2.561 13.314 -0.794 13.581 Atomic orbital electron populations 1.21645 0.90339 1.02461 1.04033 1.19051 0.98607 0.99403 0.83341 0.83687 1.29738 0.91558 0.92310 0.94107 1.81165 1.11119 1.10889 1.13951 1.21832 0.96699 0.98439 0.89057 1.62024 1.57671 1.03729 1.01175 1.22603 0.95517 0.91719 1.03639 1.18660 0.93664 0.90885 0.85944 0.97592 1.20871 0.94893 0.88708 1.46735 0.93343 1.25685 1.01205 0.95557 0.94856 1.69996 1.37275 0.98546 1.51882 0.86304 0.82808 0.78161 0.79055 1.19853 1.21676 1.16799 1.20134 0.94940 0.94413 0.95965 1.21013 0.95578 0.96861 0.98839 1.21425 1.00265 0.99249 0.93447 1.21320 0.94291 1.00966 0.99173 1.21247 0.97705 0.97675 0.97680 1.21125 0.99847 1.01191 0.95173 0.90562 0.88951 0.94062 0.96173 0.91480 0.96831 0.91487 0.88706 0.92678 0.86163 0.84231 0.83866 0.84688 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.04 71.98 0.65 -2.35 16 2 C 0.02 0.44 2.68 -12.60 -0.03 0.41 16 3 H 0.15 2.61 6.33 -2.39 -0.02 2.59 16 4 C 0.24 7.28 14.64 89.44 1.31 8.59 16 5 N -0.49 -17.57 18.54 20.01 0.37 -17.20 16 6 C 0.07 2.37 4.14 86.30 0.36 2.72 16 7 N -0.52 -17.74 3.62 -905.92 -3.28 -21.02 16 8 C 0.01 0.35 8.98 127.69 1.15 1.49 16 9 C 0.22 9.01 1.63 43.42 0.07 9.08 16 10 H 0.01 0.29 4.32 -2.39 -0.01 0.28 16 11 C -0.47 -24.46 7.41 25.60 0.19 -24.27 16 12 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 13 C 0.03 1.41 5.47 84.66 0.46 1.88 16 14 N -0.94 -56.04 13.96 21.45 0.30 -55.74 16 15 Si 0.91 42.52 27.21 68.60 1.87 44.38 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.24 -10.51 6.02 99.48 0.60 -9.91 16 19 C -0.05 -2.05 3.48 -19.87 -0.07 -2.12 16 20 C -0.10 -3.57 8.50 22.27 0.19 -3.39 16 21 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 22 C -0.14 -3.66 10.05 22.27 0.22 -3.43 16 23 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 24 C -0.15 -5.55 9.67 22.27 0.22 -5.34 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 2.18 7.75 -2.39 -0.02 2.16 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 29 H 0.07 2.84 6.77 -2.39 -0.02 2.82 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 1.83 6.32 -2.39 -0.02 1.81 16 32 H 0.09 1.83 6.37 -2.39 -0.02 1.81 16 33 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.12 4.16 7.93 -2.91 -0.02 4.14 16 35 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.10 3.68 7.59 -2.91 -0.02 3.66 16 Total: -1.00 -64.30 315.82 5.35 -58.95 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.94 Total: 14.10 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 5.16 Total: -23.47 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -2.61 Total: -93.96 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.87 Total: 44.38 kcal Total: -64.30 5.35 -58.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.640 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds