Wall clock time and date at job start Mon Mar 30 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47510 * 2 1 4 4 N 1.30106 * 124.94618 * 269.97633 * 3 2 1 5 5 C 1.35790 * 109.64082 * 180.02562 * 4 3 2 6 6 C 1.39739 * 133.59953 * 180.02562 * 5 4 3 7 7 C 1.36614 * 119.88578 * 179.22934 * 6 5 4 8 8 C 1.38780 * 120.66199 * 0.62506 * 7 6 5 9 9 C 1.37855 * 120.45526 * 359.60574 * 8 7 6 10 10 C 1.38836 * 119.68830 * 359.97438 * 9 8 7 11 11 N 1.36035 * 124.95107 * 89.99586 * 3 2 1 12 12 C 1.46496 * 126.35217 * 359.97438 * 11 3 2 13 13 H 1.09000 * 109.47092 * 0.02562 * 12 11 3 14 14 C 1.50700 * 109.47577 * 239.99937 * 12 11 3 15 15 H 1.08000 * 120.00021 * 305.35649 * 14 12 11 16 16 C 1.37874 * 119.99859 * 125.34667 * 14 12 11 17 17 N 1.31517 * 119.99828 * 175.45346 * 16 14 12 18 18 Si 1.86802 * 120.00365 * 355.45730 * 16 14 12 19 19 H 1.48492 * 109.47143 * 94.86238 * 18 16 14 20 20 H 1.48497 * 109.47076 * 214.86338 * 18 16 14 21 21 H 1.48497 * 109.46786 * 334.86114 * 18 16 14 22 22 C 1.52998 * 109.47239 * 119.99721 * 12 11 3 23 23 C 1.53002 * 109.47448 * 185.72362 * 22 12 11 24 24 H 1.08996 * 109.46851 * 60.00057 * 1 2 3 25 25 H 1.08992 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47278 * 300.00483 * 1 2 3 27 27 H 1.09000 * 109.47278 * 239.99517 * 2 1 3 28 28 H 1.09008 * 109.46890 * 119.99558 * 2 1 3 29 29 H 1.07998 * 120.06174 * 359.94800 * 6 5 4 30 30 H 1.07994 * 119.67063 * 180.23302 * 7 6 5 31 31 H 1.08005 * 119.77221 * 179.62474 * 8 7 6 32 32 H 1.07997 * 120.15811 * 180.02562 * 9 8 7 33 33 H 0.97002 * 119.99896 * 180.02562 * 17 16 14 34 34 H 1.09004 * 109.46904 * 65.72189 * 22 12 11 35 35 H 1.08999 * 109.47435 * 305.72265 * 22 12 11 36 36 H 1.09000 * 109.47461 * 174.97832 * 23 22 12 37 37 H 1.08995 * 109.47136 * 54.97100 * 23 22 12 38 38 H 1.09005 * 109.46655 * 294.97740 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2813 2.1232 -1.0665 5 6 2.7183 3.3579 -0.7080 6 6 3.1174 4.4860 -1.4297 7 6 3.5011 5.6174 -0.7671 8 6 3.5117 5.6559 0.6201 9 6 3.1267 4.5534 1.3527 10 6 2.7254 3.3977 0.6964 11 7 2.2921 2.1555 1.1150 12 6 2.1350 1.7130 2.5027 13 1 1.7717 0.6854 2.5174 14 6 1.1457 2.6062 3.2059 15 1 1.2955 3.6757 3.2153 16 6 0.0494 2.0580 3.8371 17 7 -0.7653 2.8269 4.5262 18 14 -0.2790 0.2233 3.7136 19 1 0.3037 -0.4644 4.8937 20 1 -1.7441 -0.0159 3.6749 21 1 0.3423 -0.3084 2.4741 22 6 3.4858 1.7860 3.2173 23 6 3.3532 1.1910 4.6207 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1114 4.4675 -2.5095 30 1 3.8052 6.4885 -1.3283 31 1 3.8235 6.5560 1.1293 32 1 3.1364 4.5888 2.4321 33 1 -1.5364 2.4412 4.9706 34 1 3.8015 2.8266 3.2922 35 1 4.2271 1.2213 2.6519 36 1 4.3333 1.1611 5.0968 37 1 2.9525 0.1798 4.5502 38 1 2.6793 1.8083 5.2148 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062807667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:13 Heat of formation + Delta-G solvation = 54.023209 kcal Electronic energy + Delta-G solvation = -19856.925678 eV Core-core repulsion = 17085.362291 eV Total energy + Delta-G solvation = -2771.563387 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.43686 -36.95831 -35.53938 -33.08204 -32.39388 -31.55348 -29.52676 -28.15727 -27.07764 -24.02470 -23.82497 -21.82475 -21.16825 -20.14932 -19.09511 -17.50194 -16.55845 -16.18439 -15.08409 -14.73853 -14.39220 -14.08633 -13.63281 -13.53787 -13.34411 -13.20158 -12.90667 -12.20009 -12.14712 -11.65786 -11.63385 -11.51534 -11.30887 -11.13880 -11.02787 -10.75890 -10.62927 -10.48081 -10.26972 -9.91739 -9.57738 -9.31564 -9.08977 -8.91192 -7.53294 -7.32002 -6.44106 -4.50359 1.62379 2.24379 3.00817 3.04826 3.13499 3.45984 3.60554 4.06280 4.53853 4.69653 4.91054 5.19717 5.41973 5.48281 5.53404 5.59340 5.68865 5.74076 5.87093 5.94494 6.02853 6.07641 6.10532 6.13742 6.23774 6.33781 6.39600 6.42580 6.54345 6.60103 6.76087 6.85890 6.93477 7.09298 7.17818 7.25959 7.37915 7.56856 7.97453 8.21748 8.62482 8.66635 9.13074 10.66728 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.009254 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.388068 B = 3025.124831 C = 3612.395276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C 0.271 3.729 4 N -0.517 5.517 5 C 0.035 3.965 6 C -0.078 4.078 7 C -0.138 4.138 8 C -0.127 4.127 9 C -0.088 4.088 10 C 0.067 3.933 11 N -0.450 5.450 12 C 0.211 3.789 13 H 0.072 0.928 14 C -0.519 4.519 15 H 0.084 0.916 16 C 0.086 3.914 17 N -0.875 5.875 18 Si 0.856 3.144 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.244 1.244 22 C -0.120 4.120 23 C -0.137 4.137 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.270 0.730 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -2.784 -4.811 8.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 C 0.006 3.994 4 N -0.239 5.239 5 C -0.086 4.086 6 C -0.098 4.098 7 C -0.159 4.159 8 C -0.148 4.148 9 C -0.108 4.108 10 C -0.045 4.045 11 N -0.135 5.135 12 C 0.113 3.887 13 H 0.089 0.911 14 C -0.557 4.557 15 H 0.102 0.898 16 C -0.120 4.120 17 N -0.509 5.509 18 Si 0.683 3.317 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.169 1.169 22 C -0.159 4.159 23 C -0.195 4.195 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.849 -3.120 -5.327 8.504 hybrid contribution -0.365 -0.542 0.947 1.151 sum 5.484 -3.661 -4.379 7.916 Atomic orbital electron populations 1.21863 0.93953 1.01821 1.03203 1.20036 0.96735 0.87865 1.03443 1.23387 0.98360 0.95743 0.81934 1.70280 1.22193 1.03564 1.27843 1.19100 1.04901 0.93685 0.90884 1.19793 1.00377 0.90798 0.98796 1.20427 1.03624 0.97517 0.94333 1.20732 1.02612 0.97576 0.93841 1.20155 1.00240 0.90627 0.99787 1.18830 1.02923 0.88507 0.94256 1.46904 1.48750 1.09227 1.08618 1.20057 0.95219 0.97723 0.75708 0.91061 1.21014 1.06727 0.95462 1.32486 0.89766 1.25073 0.94945 0.97966 0.94051 1.69870 1.14344 1.35826 1.30903 0.87256 0.78666 0.86087 0.79705 1.19759 1.20697 1.16932 1.21832 0.96738 1.00979 0.96336 1.21616 1.00670 1.00479 0.96749 0.92012 0.92087 0.91681 0.89112 0.90311 0.86577 0.86506 0.86303 0.85839 0.91954 0.91930 0.94390 0.93813 0.93935 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.06 37.16 0.34 -2.15 16 2 C -0.04 -0.71 5.87 -27.88 -0.16 -0.87 16 3 C 0.27 5.64 7.11 -154.83 -1.10 4.54 16 4 N -0.52 -11.24 11.27 -8.24 -0.09 -11.33 16 5 C 0.03 0.74 7.23 -84.70 -0.61 0.13 16 6 C -0.08 -1.41 10.05 -39.61 -0.40 -1.81 16 7 C -0.14 -2.23 9.96 -39.97 -0.40 -2.62 16 8 C -0.13 -2.15 10.03 -39.52 -0.40 -2.55 16 9 C -0.09 -1.74 9.01 -39.50 -0.36 -2.10 16 10 C 0.07 1.47 6.23 -83.99 -0.52 0.95 16 11 N -0.45 -9.88 2.64 -105.34 -0.28 -10.15 16 12 C 0.21 4.58 2.33 -69.09 -0.16 4.42 16 13 H 0.07 1.51 2.88 -51.93 -0.15 1.36 16 14 C -0.52 -13.11 7.86 -34.44 -0.27 -13.38 16 15 H 0.08 2.38 6.99 -52.49 -0.37 2.02 16 16 C 0.09 2.23 5.47 -17.82 -0.10 2.13 16 17 N -0.87 -24.45 13.96 55.43 0.77 -23.67 16 18 Si 0.86 18.64 26.03 -169.99 -4.43 14.21 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.24 -4.77 3.59 56.52 0.20 -4.57 16 22 C -0.12 -2.31 5.39 -26.73 -0.14 -2.46 16 23 C -0.14 -2.45 9.65 37.16 0.36 -2.09 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.25 5.66 -51.93 -0.29 0.95 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.08 1.26 6.54 -51.92 -0.34 0.93 16 29 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.12 2.47 6.41 -52.49 -0.34 2.13 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 34 H 0.06 1.23 6.54 -51.93 -0.34 0.89 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.46 7.57 -51.93 -0.39 1.07 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -28.87 300.86 -8.77 -37.65 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.36 Total: 6.64 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -3.93 Total: -17.87 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.40 Total: -45.16 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.43 Total: 14.21 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.87 -8.77 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062807667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.670 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds