Wall clock time and date at job start Mon Mar 30 2020 07:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47510 * 2 1 4 4 N 1.30106 * 124.94618 * 269.97633 * 3 2 1 5 5 C 1.35790 * 109.64082 * 180.02562 * 4 3 2 6 6 C 1.39739 * 133.59953 * 180.02562 * 5 4 3 7 7 C 1.36614 * 119.88578 * 179.22934 * 6 5 4 8 8 C 1.38780 * 120.66199 * 0.62506 * 7 6 5 9 9 C 1.37855 * 120.45526 * 359.60574 * 8 7 6 10 10 C 1.38836 * 119.68830 * 359.97438 * 9 8 7 11 11 N 1.36035 * 124.95107 * 89.99586 * 3 2 1 12 12 C 1.46496 * 126.35217 * 359.97438 * 11 3 2 13 13 H 1.09000 * 109.47092 * 0.02562 * 12 11 3 14 14 C 1.50700 * 109.47577 * 239.99937 * 12 11 3 15 15 H 1.08000 * 120.00021 * 305.35649 * 14 12 11 16 16 C 1.37874 * 119.99859 * 125.34667 * 14 12 11 17 17 N 1.31517 * 119.99828 * 175.45346 * 16 14 12 18 18 Si 1.86802 * 120.00365 * 355.45730 * 16 14 12 19 19 H 1.48492 * 109.47143 * 94.86238 * 18 16 14 20 20 H 1.48497 * 109.47076 * 214.86338 * 18 16 14 21 21 H 1.48497 * 109.46786 * 334.86114 * 18 16 14 22 22 C 1.52998 * 109.47239 * 119.99721 * 12 11 3 23 23 C 1.53002 * 109.47448 * 185.72362 * 22 12 11 24 24 H 1.08996 * 109.46851 * 60.00057 * 1 2 3 25 25 H 1.08992 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47278 * 300.00483 * 1 2 3 27 27 H 1.09000 * 109.47278 * 239.99517 * 2 1 3 28 28 H 1.09008 * 109.46890 * 119.99558 * 2 1 3 29 29 H 1.07998 * 120.06174 * 359.94800 * 6 5 4 30 30 H 1.07994 * 119.67063 * 180.23302 * 7 6 5 31 31 H 1.08005 * 119.77221 * 179.62474 * 8 7 6 32 32 H 1.07997 * 120.15811 * 180.02562 * 9 8 7 33 33 H 0.97002 * 119.99896 * 180.02562 * 17 16 14 34 34 H 1.09004 * 109.46904 * 65.72189 * 22 12 11 35 35 H 1.08999 * 109.47435 * 305.72265 * 22 12 11 36 36 H 1.09000 * 109.47461 * 174.97832 * 23 22 12 37 37 H 1.08995 * 109.47136 * 54.97100 * 23 22 12 38 38 H 1.09005 * 109.46655 * 294.97740 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2813 2.1232 -1.0665 5 6 2.7183 3.3579 -0.7080 6 6 3.1174 4.4860 -1.4297 7 6 3.5011 5.6174 -0.7671 8 6 3.5117 5.6559 0.6201 9 6 3.1267 4.5534 1.3527 10 6 2.7254 3.3977 0.6964 11 7 2.2921 2.1555 1.1150 12 6 2.1350 1.7130 2.5027 13 1 1.7717 0.6854 2.5174 14 6 1.1457 2.6062 3.2059 15 1 1.2955 3.6757 3.2153 16 6 0.0494 2.0580 3.8371 17 7 -0.7653 2.8269 4.5262 18 14 -0.2790 0.2233 3.7136 19 1 0.3037 -0.4644 4.8937 20 1 -1.7441 -0.0159 3.6749 21 1 0.3423 -0.3084 2.4741 22 6 3.4858 1.7860 3.2173 23 6 3.3532 1.1910 4.6207 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1114 4.4675 -2.5095 30 1 3.8052 6.4885 -1.3283 31 1 3.8235 6.5560 1.1293 32 1 3.1364 4.5888 2.4321 33 1 -1.5364 2.4412 4.9706 34 1 3.8015 2.8266 3.2922 35 1 4.2271 1.2213 2.6519 36 1 4.3333 1.1611 5.0968 37 1 2.9525 0.1798 4.5502 38 1 2.6793 1.8083 5.2148 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062807667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:06 Heat of formation + Delta-G solvation = 38.283020 kcal Electronic energy + Delta-G solvation = -19857.608224 eV Core-core repulsion = 17085.362291 eV Total energy + Delta-G solvation = -2772.245933 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.98153 -38.42047 -37.18866 -34.43012 -34.29585 -33.09909 -31.00962 -29.60624 -28.85803 -25.55740 -25.38416 -23.33055 -22.62726 -21.73642 -20.66694 -19.35852 -18.08549 -17.77468 -16.62548 -16.22271 -16.02293 -15.59922 -15.21256 -15.06297 -14.79146 -14.74703 -14.52950 -13.75174 -13.54186 -13.35726 -13.07820 -12.92165 -12.82359 -12.58696 -12.45034 -12.18725 -12.10382 -11.97033 -11.88731 -11.73327 -11.22724 -10.93895 -10.87601 -10.69152 -9.04862 -8.84464 -8.42809 -6.54237 0.14881 0.78165 1.27734 1.29312 1.38662 1.89736 2.04807 2.22430 3.01114 3.05722 3.28815 3.69786 3.91303 4.11583 4.19091 4.23567 4.29084 4.33409 4.38106 4.47213 4.60626 4.64178 4.68581 4.83541 4.84611 4.88266 4.96961 5.05942 5.08972 5.23538 5.25173 5.29593 5.41177 5.51203 5.67381 5.74622 5.79922 6.10538 6.13259 6.53196 6.56806 7.08871 7.13814 8.71926 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.009254 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.388068 B = 3025.124831 C = 3612.395276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C 0.261 3.739 4 N -0.533 5.533 5 C 0.006 3.994 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.115 4.115 9 C -0.117 4.117 10 C 0.037 3.963 11 N -0.465 5.465 12 C 0.219 3.781 13 H 0.082 0.918 14 C -0.516 4.516 15 H 0.036 0.964 16 C 0.033 3.967 17 N -0.930 5.930 18 Si 0.912 3.088 19 H -0.259 1.259 20 H -0.288 1.288 21 H -0.210 1.210 22 C -0.116 4.116 23 C -0.133 4.133 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.270 0.730 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 -4.098 -6.340 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.005 4.005 4 N -0.255 5.255 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.145 4.145 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.074 4.074 11 N -0.151 5.151 12 C 0.120 3.880 13 H 0.099 0.901 14 C -0.554 4.554 15 H 0.055 0.945 16 C -0.169 4.169 17 N -0.567 5.567 18 Si 0.735 3.265 19 H -0.184 1.184 20 H -0.215 1.215 21 H -0.133 1.133 22 C -0.155 4.155 23 C -0.191 4.191 24 H 0.076 0.924 25 H 0.115 0.885 26 H 0.053 0.947 27 H 0.136 0.864 28 H 0.109 0.891 29 H 0.156 0.844 30 H 0.180 0.820 31 H 0.170 0.830 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.253 -4.421 -6.882 10.932 hybrid contribution -0.718 0.078 1.344 1.526 sum 6.535 -4.343 -5.538 9.604 Atomic orbital electron populations 1.21868 0.93715 1.03605 1.01489 1.20281 0.96808 0.85820 1.05340 1.24162 0.97858 0.97135 0.81322 1.70267 1.22927 1.03998 1.28288 1.19623 1.05977 0.94663 0.91095 1.20217 0.99901 0.90374 1.00049 1.20921 1.01367 0.98194 0.94024 1.21196 1.00255 0.97442 0.94580 1.20287 1.02376 0.91686 0.99401 1.19217 1.04083 0.89057 0.95064 1.46719 1.49825 1.09822 1.08717 1.19936 0.95434 0.96984 0.75599 0.90077 1.21028 1.07743 0.93852 1.32760 0.94529 1.25901 0.94513 1.02978 0.93468 1.70025 1.15456 1.38267 1.32980 0.86379 0.78302 0.80291 0.81574 1.18404 1.21480 1.13296 1.21781 0.95769 1.00743 0.97214 1.21574 1.01861 1.00188 0.95433 0.92438 0.88490 0.94687 0.86429 0.89135 0.84381 0.81978 0.83019 0.87462 0.92078 0.93227 0.92619 0.90755 0.92796 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.06 71.98 0.65 -3.92 16 2 C -0.04 -1.37 5.87 29.85 0.18 -1.19 16 3 C 0.26 10.63 7.11 137.92 0.98 11.61 16 4 N -0.53 -22.84 11.27 -179.97 -2.03 -24.87 16 5 C 0.01 0.25 7.23 39.45 0.29 0.54 16 6 C -0.09 -2.95 10.05 22.25 0.22 -2.72 16 7 C -0.13 -3.64 9.96 22.02 0.22 -3.42 16 8 C -0.12 -3.70 10.03 22.31 0.22 -3.47 16 9 C -0.12 -4.75 9.01 22.32 0.20 -4.55 16 10 C 0.04 1.65 6.23 38.86 0.24 1.89 16 11 N -0.46 -20.53 2.64 -487.19 -1.29 -21.81 16 12 C 0.22 9.54 2.33 44.25 0.10 9.64 16 13 H 0.08 3.32 2.88 -2.39 -0.01 3.31 16 14 C -0.52 -27.20 7.86 25.60 0.20 -27.00 16 15 H 0.04 2.23 6.99 -2.91 -0.02 2.21 16 16 C 0.03 1.74 5.47 84.65 0.46 2.20 16 17 N -0.93 -54.55 13.96 21.45 0.30 -54.26 16 18 Si 0.91 38.24 26.03 68.60 1.79 40.02 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.21 -7.50 3.59 99.48 0.36 -7.15 16 22 C -0.12 -4.45 5.39 30.59 0.16 -4.29 16 23 C -0.13 -4.59 9.65 71.98 0.69 -3.89 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.03 1.27 5.66 -2.39 -0.01 1.26 16 27 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.09 2.59 6.54 -2.38 -0.02 2.58 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 30 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 32 H 0.11 4.59 6.41 -2.91 -0.02 4.57 16 33 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.05 2.00 6.54 -2.38 -0.02 1.99 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.04 1.81 7.57 -2.38 -0.02 1.79 16 Total: -1.00 -66.76 300.86 4.30 -62.46 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.71 Total: 27.03 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 4.83 Total: -28.58 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -3.02 Total: -100.94 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.79 Total: 40.02 kcal Total: -66.76 4.30 -62.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062807667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.744 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds