Wall clock time and date at job start Mon Mar 30 2020 07:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.37850 * 126.53633 * 90.02950 * 4 3 2 6 6 C 1.40196 * 125.30581 * 359.95261 * 5 4 3 7 7 H 1.07999 * 119.99305 * 0.02562 * 6 5 4 8 8 C 1.40341 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.30587 * 120.00251 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99991 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47281 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47134 * 120.00040 * 10 8 6 13 13 H 1.48494 * 109.47357 * 240.00075 * 10 8 6 14 14 N 1.32468 * 109.39221 * 179.97438 * 5 4 3 15 15 C 1.33966 * 109.77776 * 359.97438 * 14 5 4 16 16 C 1.40543 * 133.19543 * 179.97438 * 15 14 5 17 17 C 1.36357 * 119.84914 * 179.29421 * 16 15 14 18 18 C 1.50697 * 119.61996 * 180.21472 * 17 16 15 19 19 C 1.53005 * 109.47085 * 270.36723 * 18 17 16 20 20 C 1.39041 * 120.75689 * 0.58609 * 17 16 15 21 21 C 1.37962 * 120.57450 * 359.65136 * 20 17 16 22 22 C 1.37958 * 126.54257 * 269.71235 * 4 3 2 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 0.96997 * 119.99885 * 180.02562 * 9 8 6 31 31 H 1.08006 * 120.07120 * 359.97438 * 16 15 14 32 32 H 1.08998 * 109.47187 * 30.36364 * 18 17 16 33 33 H 1.08998 * 109.47102 * 150.36768 * 18 17 16 34 34 H 1.08998 * 109.47114 * 60.00052 * 19 18 17 35 35 H 1.08996 * 109.47142 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.46815 * 299.99869 * 19 18 17 37 37 H 1.08000 * 119.71095 * 179.62814 * 20 17 16 38 38 H 1.08005 * 120.11543 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3251 1.4432 -1.1086 6 6 3.8877 1.4432 -2.4405 7 1 2.8305 1.4429 -2.6616 8 6 4.8234 1.4434 -3.4864 9 7 6.1016 1.4432 -3.2191 10 14 4.2405 1.4441 -5.2612 11 1 2.7559 1.4449 -5.2946 12 1 4.7513 2.6567 -5.9495 13 1 4.7509 0.2318 -5.9503 14 7 5.5911 1.4435 -0.7186 15 6 5.6532 1.4436 0.6196 16 6 6.7213 1.4434 1.5331 17 6 6.4685 1.4581 2.8729 18 6 7.6177 1.4627 3.8477 19 6 8.0060 0.0217 4.1852 20 6 5.1625 1.4611 3.3501 21 6 4.0958 1.4565 2.4753 22 6 4.3268 1.4479 1.1074 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 6.7483 1.4438 -3.9420 31 1 7.7401 1.4427 1.1745 32 1 8.4707 1.9738 3.4014 33 1 7.3193 1.9814 4.7587 34 1 8.3045 -0.4970 3.2741 35 1 8.8369 0.0251 4.8906 36 1 7.1530 -0.4894 4.6315 37 1 4.9817 1.4667 4.4148 38 1 3.0843 1.4593 2.8540 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074296356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:46 Heat of formation + Delta-G solvation = 39.211812 kcal Electronic energy + Delta-G solvation = -18956.688865 eV Core-core repulsion = 16184.483208 eV Total energy + Delta-G solvation = -2772.205657 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38103 -36.93853 -34.74856 -33.69150 -32.34219 -31.29849 -28.59545 -28.43961 -25.86858 -25.50364 -22.81830 -21.42930 -21.23412 -19.79563 -19.38561 -16.92413 -16.08547 -15.86286 -14.73862 -14.53711 -14.37334 -14.14220 -13.66779 -13.16796 -12.91922 -12.71574 -12.63739 -12.52365 -11.91789 -11.78318 -11.57999 -11.40479 -11.37345 -11.09535 -10.92813 -10.64592 -10.50161 -10.35065 -10.26281 -10.18796 -10.06410 -9.27171 -8.95009 -7.87953 -7.12932 -6.80573 -6.66368 -4.60676 2.27855 2.68327 2.98570 3.02508 3.06785 3.79499 4.08429 4.14892 4.91619 5.22218 5.29633 5.41393 5.45961 5.52626 5.55221 5.66057 5.76238 5.87129 5.91673 6.02265 6.04580 6.07079 6.16926 6.21815 6.28372 6.36509 6.46344 6.58537 6.59803 6.61662 6.80175 6.91189 7.01829 7.24908 7.51227 7.68289 7.76976 7.94526 8.01702 8.34350 8.65625 9.05165 9.97731 10.22971 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.007006 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.670532 B = 3995.549067 C = 5375.356742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.133 3.867 4 N -0.539 5.539 5 C 0.420 3.580 6 C -0.440 4.440 7 H 0.087 0.913 8 C 0.077 3.923 9 N -0.716 5.716 10 Si 0.917 3.083 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.271 1.271 14 N -0.536 5.536 15 C 0.111 3.889 16 C -0.124 4.124 17 C -0.090 4.090 18 C -0.073 4.073 19 C -0.143 4.143 20 C -0.175 4.175 21 C -0.101 4.101 22 C -0.006 4.006 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.278 0.722 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -1.185 5.685 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.009 3.991 4 N -0.235 5.235 5 C 0.183 3.817 6 C -0.478 4.478 7 H 0.105 0.895 8 C -0.150 4.150 9 N -0.338 5.338 10 Si 0.740 3.260 11 H -0.184 1.184 12 H -0.197 1.197 13 H -0.197 1.197 14 N -0.260 5.260 15 C -0.017 4.017 16 C -0.145 4.145 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.201 4.201 20 C -0.196 4.196 21 C -0.123 4.123 22 C -0.113 4.113 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.975 -1.179 5.032 6.520 hybrid contribution -1.070 -0.028 -0.246 1.099 sum -5.045 -1.207 4.786 7.057 Atomic orbital electron populations 1.21686 0.95596 1.01502 1.01573 1.21917 0.95349 0.97700 1.02986 1.21287 0.79079 0.96557 1.02155 1.45539 1.04676 1.67795 1.05461 1.20459 0.83308 0.90457 0.87461 1.18518 0.94638 1.47854 0.86780 0.89517 1.25860 0.94399 0.93496 1.01266 1.69988 1.01496 1.28228 1.34119 0.86129 0.80066 0.78738 0.81054 1.18414 1.19659 1.19660 1.71390 1.15977 1.32611 1.06010 1.19538 0.90899 0.98687 0.92573 1.19583 0.96598 1.07558 0.90786 1.18924 0.93718 1.03430 0.93217 1.20370 0.96368 0.96732 0.97571 1.21737 1.00412 0.96854 1.01071 1.20127 0.91583 1.10695 0.97205 1.19562 0.97600 1.05512 0.89650 1.18885 0.92604 1.11050 0.88774 0.92766 0.93000 0.92574 0.91012 0.92112 0.90150 0.91660 0.91063 0.87555 0.91972 0.92168 0.92633 0.93452 0.92920 0.87970 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.14 -2.30 6.26 -26.73 -0.17 -2.47 16 3 C 0.13 2.46 5.90 -4.04 -0.02 2.43 16 4 N -0.54 -12.79 2.86 -113.48 -0.32 -13.12 16 5 C 0.42 11.39 7.41 -155.67 -1.15 10.24 16 6 C -0.44 -11.30 8.99 -38.06 -0.34 -11.64 16 7 H 0.09 2.02 7.10 -52.49 -0.37 1.65 16 8 C 0.08 1.91 5.50 -17.29 -0.10 1.82 16 9 N -0.72 -19.13 11.85 55.57 0.66 -18.48 16 10 Si 0.92 17.98 29.56 -169.99 -5.03 12.96 16 11 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 N -0.54 -15.57 9.33 -10.31 -0.10 -15.67 16 15 C 0.11 2.93 7.21 -84.89 -0.61 2.32 16 16 C -0.12 -2.88 9.69 -39.39 -0.38 -3.26 16 17 C -0.09 -1.79 5.10 -105.00 -0.54 -2.32 16 18 C -0.07 -1.14 6.04 -27.88 -0.17 -1.30 16 19 C -0.14 -2.01 9.90 37.16 0.37 -1.64 16 20 C -0.18 -3.40 9.68 -39.38 -0.38 -3.78 16 21 C -0.10 -2.12 10.04 -39.50 -0.40 -2.52 16 22 C -0.01 -0.14 6.88 -83.75 -0.58 -0.71 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.43 7.32 -51.93 -0.38 1.05 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 31 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 32 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -30.06 319.73 -9.86 -39.93 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.80 Total: 3.84 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -4.10 Total: -14.28 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.24 Total: -47.26 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.06 -9.86 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074296356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.138 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds