Wall clock time and date at job start Mon Mar 30 2020 07:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47269 * 2 1 4 4 C 1.39042 * 119.62025 * 89.99914 * 3 2 1 5 5 C 1.37963 * 120.57229 * 180.02562 * 4 3 2 6 6 C 1.38714 * 119.76626 * 359.97438 * 5 4 3 7 7 C 1.41336 * 119.78125 * 0.14896 * 6 5 4 8 8 C 1.36361 * 119.61719 * 270.36716 * 3 2 1 9 9 N 1.33971 * 107.53334 * 180.28549 * 7 6 5 10 10 C 1.32473 * 109.77900 * 359.75843 * 9 7 6 11 11 C 1.40182 * 125.30272 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99914 * 179.97438 * 11 10 9 13 13 C 1.40351 * 120.00407 * 359.97324 * 11 10 9 14 14 N 1.30591 * 119.99703 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00314 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46937 * 60.00318 * 15 13 11 17 17 H 1.48497 * 109.46889 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47424 * 300.00507 * 15 13 11 19 19 N 1.37849 * 109.38892 * 0.02562 * 10 9 7 20 20 C 1.46500 * 126.53337 * 179.97438 * 19 10 9 21 21 C 1.52997 * 109.47473 * 60.02501 * 20 19 10 22 22 C 1.53006 * 109.47249 * 300.02203 * 20 19 10 23 23 H 1.08998 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46786 * 300.00076 * 1 2 3 25 25 H 1.08992 * 109.46960 * 60.00098 * 1 2 3 26 26 H 1.09001 * 109.47488 * 239.99707 * 2 1 3 27 27 H 1.09005 * 109.47488 * 120.00211 * 2 1 3 28 28 H 1.07995 * 119.71206 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.11666 * 179.97438 * 5 4 3 30 30 H 1.07993 * 120.07536 * 359.52163 * 8 3 2 31 31 H 0.96996 * 120.00027 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.46845 * 180.02562 * 20 19 10 33 33 H 1.09002 * 109.47153 * 59.99757 * 21 20 19 34 34 H 1.09001 * 109.46832 * 299.99948 * 21 20 19 35 35 H 1.09004 * 109.47261 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.46955 * 180.02562 * 22 20 19 37 37 H 1.09000 * 109.47050 * 300.00351 * 22 20 19 38 38 H 1.09001 * 109.47002 * 60.00085 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2614 2.0687 1.2087 5 6 2.7208 3.3694 1.2316 6 6 2.9570 4.0375 0.0391 7 6 2.7225 3.3822 -1.1910 8 6 2.2498 2.0587 -1.1854 9 7 3.0335 4.2407 -2.1713 10 6 3.4409 5.3883 -1.6497 11 6 3.8453 6.5129 -2.3824 12 1 4.1620 7.4077 -1.8672 13 6 3.8384 6.4762 -3.7854 14 7 3.4549 5.3944 -4.4083 15 14 4.3766 7.9751 -4.7617 16 1 5.7818 8.3109 -4.4185 17 1 4.2778 7.6814 -6.2140 18 1 3.4975 9.1245 -4.4287 19 7 3.4053 5.3040 -0.2743 20 6 3.7777 6.3569 0.6739 21 6 2.8897 7.5825 0.4499 22 6 5.2427 6.7423 0.4585 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 2.0782 1.5493 2.1376 29 1 2.8958 3.8658 2.1747 30 1 2.0699 1.5443 -2.1178 31 1 3.4499 5.3690 -5.3780 32 1 3.6439 5.9925 1.6924 33 1 1.8461 7.3080 0.6033 34 1 3.0236 7.9469 -0.5687 35 1 3.1666 8.3657 1.1556 36 1 5.5199 7.5253 1.1642 37 1 5.8753 5.8691 0.6181 38 1 5.3766 7.1067 -0.5600 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074296367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:37 Heat of formation + Delta-G solvation = 46.491424 kcal Electronic energy + Delta-G solvation = -19262.215799 eV Core-core repulsion = 16490.325810 eV Total energy + Delta-G solvation = -2771.889990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44318 -37.05067 -34.81019 -33.72294 -32.32159 -30.32111 -28.57911 -27.81430 -26.74652 -25.85702 -22.89856 -21.84976 -21.22658 -19.83475 -18.78908 -16.94819 -16.21153 -15.61029 -14.71317 -14.43575 -14.09229 -13.84270 -13.66617 -13.11192 -12.83527 -12.73575 -12.48736 -12.38322 -11.99689 -11.72641 -11.57012 -11.52292 -11.31846 -11.00687 -10.89857 -10.75802 -10.49536 -10.38665 -10.19947 -10.10726 -9.84414 -9.25635 -8.94816 -7.86290 -7.10882 -6.79055 -6.64923 -4.59114 2.29106 2.69690 3.00362 3.02057 3.03626 3.78802 4.06084 4.15755 4.93187 5.25037 5.41196 5.45158 5.47792 5.60332 5.65966 5.75173 5.87519 5.95448 5.97256 6.04967 6.12450 6.19324 6.24974 6.28627 6.29442 6.47958 6.52625 6.60424 6.66685 6.70585 6.84181 6.93383 7.07327 7.26867 7.53551 7.69025 7.79493 7.95693 8.01820 8.35974 8.66921 9.07751 9.99664 10.24283 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.006867 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.569146 B = 4076.198320 C = 5073.527095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.091 4.091 4 C -0.175 4.175 5 C -0.103 4.103 6 C -0.006 4.006 7 C 0.110 3.890 8 C -0.124 4.124 9 N -0.537 5.537 10 C 0.424 3.576 11 C -0.442 4.442 12 H 0.092 0.908 13 C 0.077 3.923 14 N -0.717 5.717 15 Si 0.913 3.087 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.264 1.264 19 N -0.534 5.534 20 C 0.156 3.844 21 C -0.167 4.167 22 C -0.167 4.167 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.279 0.721 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 0.175 6.638 6.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.094 4.094 4 C -0.196 4.196 5 C -0.125 4.125 6 C -0.113 4.113 7 C -0.017 4.017 8 C -0.145 4.145 9 N -0.261 5.261 10 C 0.188 3.812 11 C -0.479 4.479 12 H 0.110 0.890 13 C -0.151 4.151 14 N -0.339 5.339 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.189 1.189 19 N -0.231 5.231 20 C 0.052 3.948 21 C -0.225 4.225 22 C -0.225 4.225 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.460 0.015 5.636 5.655 hybrid contribution 0.312 0.889 0.542 1.087 sum -0.148 0.903 6.178 6.246 Atomic orbital electron populations 1.21735 0.95798 1.00419 1.02115 1.20368 0.95365 0.93876 1.01419 1.18921 1.02343 0.95200 0.92886 1.20118 1.08663 0.94628 0.96166 1.19556 1.04304 0.94827 0.93787 1.18909 1.08056 0.87703 0.96656 1.19534 0.98176 0.94603 0.89398 1.19580 1.05679 0.92637 0.96627 1.71393 1.28462 1.00246 1.25996 1.20371 0.90687 0.93671 0.76513 1.18594 1.41528 0.97106 0.90701 0.88980 1.25884 0.94047 0.97196 0.97958 1.69972 1.27927 1.26028 1.09927 0.86288 0.80057 0.81294 0.78661 1.18847 1.20017 1.18855 1.45668 1.60380 1.09984 1.07029 1.20754 0.94635 0.87608 0.91850 1.22242 0.99511 0.96926 1.03811 1.22245 0.95283 1.01160 1.03820 0.93461 0.92922 0.92636 0.91987 0.92185 0.87990 0.88762 0.87579 0.91008 0.90862 0.92831 0.90072 0.92317 0.92322 0.92832 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.16 0.37 -1.64 16 2 C -0.07 -1.14 6.04 -27.88 -0.17 -1.31 16 3 C -0.09 -1.80 5.10 -105.00 -0.54 -2.34 16 4 C -0.17 -3.41 9.68 -39.38 -0.38 -3.79 16 5 C -0.10 -2.16 9.88 -39.51 -0.39 -2.55 16 6 C -0.01 -0.14 6.88 -83.75 -0.58 -0.71 16 7 C 0.11 2.92 7.21 -84.89 -0.61 2.31 16 8 C -0.12 -2.88 9.69 -39.39 -0.38 -3.26 16 9 N -0.54 -15.51 9.33 -10.31 -0.10 -15.60 16 10 C 0.42 11.32 7.02 -155.68 -1.09 10.23 16 11 C -0.44 -11.04 7.45 -38.06 -0.28 -11.32 16 12 H 0.09 2.07 4.40 -52.49 -0.23 1.83 16 13 C 0.08 1.87 5.50 -17.28 -0.10 1.78 16 14 N -0.72 -19.00 11.85 55.57 0.66 -18.34 16 15 Si 0.91 17.77 29.56 -169.99 -5.03 12.75 16 16 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 17 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 19 N -0.53 -12.58 2.70 -106.41 -0.29 -12.87 16 20 C 0.16 2.90 3.44 -67.93 -0.23 2.66 16 21 C -0.17 -2.81 9.19 37.16 0.34 -2.47 16 22 C -0.17 -2.81 9.19 37.16 0.34 -2.47 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 27 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.09 1.74 7.74 -52.49 -0.41 1.33 16 30 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 31 H 0.28 6.70 8.29 -40.82 -0.34 6.37 16 32 H 0.07 1.25 7.61 -51.93 -0.40 0.86 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.49 5.53 -51.93 -0.29 1.20 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.49 5.53 -51.93 -0.29 1.20 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -29.68 309.27 -9.17 -38.85 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.38 Total: 5.43 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -3.70 Total: -14.88 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.28 Total: -46.81 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.68 -9.17 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074296367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.346 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds