Wall clock time and date at job start Mon Mar 30 2020 07:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47269 * 2 1 4 4 C 1.39042 * 119.62025 * 89.99914 * 3 2 1 5 5 C 1.37963 * 120.57229 * 180.02562 * 4 3 2 6 6 C 1.38714 * 119.76626 * 359.97438 * 5 4 3 7 7 C 1.41336 * 119.78125 * 0.14896 * 6 5 4 8 8 C 1.36361 * 119.61719 * 270.36716 * 3 2 1 9 9 N 1.33971 * 107.53334 * 180.28549 * 7 6 5 10 10 C 1.32473 * 109.77900 * 359.75843 * 9 7 6 11 11 C 1.40182 * 125.30272 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99914 * 179.97438 * 11 10 9 13 13 C 1.40351 * 120.00407 * 359.97324 * 11 10 9 14 14 N 1.30591 * 119.99703 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00314 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46937 * 60.00318 * 15 13 11 17 17 H 1.48497 * 109.46889 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47424 * 300.00507 * 15 13 11 19 19 N 1.37849 * 109.38892 * 0.02562 * 10 9 7 20 20 C 1.46500 * 126.53337 * 179.97438 * 19 10 9 21 21 C 1.52997 * 109.47473 * 60.02501 * 20 19 10 22 22 C 1.53006 * 109.47249 * 300.02203 * 20 19 10 23 23 H 1.08998 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46786 * 300.00076 * 1 2 3 25 25 H 1.08992 * 109.46960 * 60.00098 * 1 2 3 26 26 H 1.09001 * 109.47488 * 239.99707 * 2 1 3 27 27 H 1.09005 * 109.47488 * 120.00211 * 2 1 3 28 28 H 1.07995 * 119.71206 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.11666 * 179.97438 * 5 4 3 30 30 H 1.07993 * 120.07536 * 359.52163 * 8 3 2 31 31 H 0.96996 * 120.00027 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.46845 * 180.02562 * 20 19 10 33 33 H 1.09002 * 109.47153 * 59.99757 * 21 20 19 34 34 H 1.09001 * 109.46832 * 299.99948 * 21 20 19 35 35 H 1.09004 * 109.47261 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.46955 * 180.02562 * 22 20 19 37 37 H 1.09000 * 109.47050 * 300.00351 * 22 20 19 38 38 H 1.09001 * 109.47002 * 60.00085 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2614 2.0687 1.2087 5 6 2.7208 3.3694 1.2316 6 6 2.9570 4.0375 0.0391 7 6 2.7225 3.3822 -1.1910 8 6 2.2498 2.0587 -1.1854 9 7 3.0335 4.2407 -2.1713 10 6 3.4409 5.3883 -1.6497 11 6 3.8453 6.5129 -2.3824 12 1 4.1620 7.4077 -1.8672 13 6 3.8384 6.4762 -3.7854 14 7 3.4549 5.3944 -4.4083 15 14 4.3766 7.9751 -4.7617 16 1 5.7818 8.3109 -4.4185 17 1 4.2778 7.6814 -6.2140 18 1 3.4975 9.1245 -4.4287 19 7 3.4053 5.3040 -0.2743 20 6 3.7777 6.3569 0.6739 21 6 2.8897 7.5825 0.4499 22 6 5.2427 6.7423 0.4585 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 2.0782 1.5493 2.1376 29 1 2.8958 3.8658 2.1747 30 1 2.0699 1.5443 -2.1178 31 1 3.4499 5.3690 -5.3780 32 1 3.6439 5.9925 1.6924 33 1 1.8461 7.3080 0.6033 34 1 3.0236 7.9469 -0.5687 35 1 3.1666 8.3657 1.1556 36 1 5.5199 7.5253 1.1642 37 1 5.8753 5.8691 0.6181 38 1 5.3766 7.1067 -0.5600 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074296367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:34 Heat of formation + Delta-G solvation = 30.965433 kcal Electronic energy + Delta-G solvation = -19262.889057 eV Core-core repulsion = 16490.325810 eV Total energy + Delta-G solvation = -2772.563247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.20649 -38.65383 -36.36663 -35.48746 -33.83872 -31.94673 -30.37282 -29.45330 -28.08386 -27.58236 -24.31611 -23.45891 -22.95167 -21.45759 -20.48397 -18.73536 -17.84555 -17.30998 -16.34577 -15.94004 -15.79077 -15.32574 -15.08779 -14.66337 -14.44047 -14.17303 -14.04448 -13.84489 -13.46199 -13.17036 -13.05774 -12.91305 -12.84734 -12.58487 -12.31491 -12.22996 -11.99792 -11.80933 -11.73905 -11.63067 -11.41287 -10.97589 -10.73091 -9.76556 -8.89849 -8.55198 -8.46192 -6.49102 0.53713 1.00215 1.40981 1.47216 1.55001 2.16138 2.37583 2.43083 3.18115 3.64710 3.83122 3.90851 4.08517 4.18757 4.25835 4.36001 4.41982 4.62489 4.65594 4.69757 4.75492 4.79243 4.87109 4.91154 4.93002 5.00067 5.10192 5.19196 5.22148 5.28349 5.34622 5.41986 5.47049 5.60717 5.76508 6.01848 6.04968 6.21695 6.28321 6.58462 6.83466 7.28313 8.13474 8.46354 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.006867 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.569146 B = 4076.198320 C = 5073.527095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C -0.084 4.084 4 C -0.161 4.161 5 C -0.105 4.105 6 C -0.027 4.027 7 C 0.056 3.944 8 C -0.147 4.147 9 N -0.591 5.591 10 C 0.398 3.602 11 C -0.461 4.461 12 H 0.112 0.888 13 C 0.027 3.973 14 N -0.772 5.772 15 Si 0.994 3.006 16 H -0.252 1.252 17 H -0.274 1.274 18 H -0.253 1.253 19 N -0.535 5.535 20 C 0.143 3.857 21 C -0.159 4.159 22 C -0.159 4.159 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.281 0.719 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.039 0.961 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 0.635 9.363 9.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.086 4.086 4 C -0.181 4.181 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.069 4.069 8 C -0.169 4.169 9 N -0.316 5.316 10 C 0.159 3.841 11 C -0.498 4.498 12 H 0.129 0.871 13 C -0.195 4.195 14 N -0.395 5.395 15 Si 0.813 3.187 16 H -0.176 1.176 17 H -0.199 1.199 18 H -0.176 1.176 19 N -0.231 5.231 20 C 0.040 3.960 21 C -0.216 4.216 22 C -0.216 4.216 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.059 0.941 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.316 0.464 8.417 8.435 hybrid contribution 0.207 0.574 -0.138 0.626 sum -0.109 1.039 8.279 8.345 Atomic orbital electron populations 1.21701 0.94407 1.02189 1.01380 1.20461 0.96433 0.91048 1.02930 1.19418 1.00289 0.97130 0.91788 1.20681 1.05862 0.94044 0.97553 1.19997 1.03457 0.95433 0.93777 1.19325 1.08822 0.88241 0.97086 1.20067 1.00474 0.96000 0.90392 1.19803 1.06992 0.92189 0.97876 1.71249 1.30164 1.01880 1.28304 1.20718 0.91409 0.93777 0.78181 1.19060 1.41900 0.97453 0.91407 0.87070 1.27022 0.93266 1.00302 0.98885 1.70143 1.30204 1.28904 1.10251 0.85084 0.80051 0.76951 0.76585 1.17616 1.19907 1.17638 1.45890 1.59741 1.10694 1.06730 1.21206 0.95947 0.87132 0.91666 1.22177 0.98436 0.97221 1.03783 1.22179 0.93871 1.01789 1.03786 0.90471 0.92485 0.94574 0.91866 0.89318 0.83677 0.85677 0.88731 0.90897 0.88915 0.94138 0.92066 0.88049 0.88061 0.94134 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.89 71.98 0.71 -2.85 16 2 C -0.07 -2.05 6.04 29.85 0.18 -1.87 16 3 C -0.08 -3.23 5.10 -20.11 -0.10 -3.33 16 4 C -0.16 -5.80 9.68 22.40 0.22 -5.58 16 5 C -0.11 -4.22 9.88 22.32 0.22 -4.00 16 6 C -0.03 -1.32 6.88 39.05 0.27 -1.05 16 7 C 0.06 3.14 7.21 40.14 0.29 3.43 16 8 C -0.15 -7.13 9.69 22.39 0.22 -6.91 16 9 N -0.59 -36.43 9.33 -186.52 -1.74 -38.17 16 10 C 0.40 22.31 7.02 133.69 0.94 23.25 16 11 C -0.46 -23.91 7.45 23.26 0.17 -23.73 16 12 H 0.11 5.08 4.40 -2.91 -0.01 5.07 16 13 C 0.03 1.39 5.50 85.39 0.47 1.86 16 14 N -0.77 -43.48 11.85 21.89 0.26 -43.22 16 15 Si 0.99 37.19 29.56 68.60 2.03 39.22 16 16 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 17 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 18 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 19 N -0.53 -25.72 2.70 -490.58 -1.33 -27.04 16 20 C 0.14 5.14 3.44 44.99 0.15 5.29 16 21 C -0.16 -5.10 9.19 71.98 0.66 -4.44 16 22 C -0.16 -5.10 9.19 71.98 0.66 -4.44 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.80 8.07 -2.39 -0.02 1.79 16 27 H 0.09 2.08 8.08 -2.38 -0.02 2.06 16 28 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.13 4.18 7.74 -2.91 -0.02 4.16 16 30 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.28 14.40 8.29 -92.71 -0.77 13.63 16 32 H 0.09 2.93 7.61 -2.39 -0.02 2.91 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 2.22 5.53 -2.39 -0.01 2.21 16 35 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 2.22 5.53 -2.39 -0.01 2.21 16 Total: -1.00 -70.74 309.27 5.33 -65.41 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 1.05 Total: 28.16 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 5.06 Total: -24.37 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -2.81 Total: -108.43 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -70.74 5.33 -65.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074296367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.376 kcal (2) G-P(sol) polarization free energy of solvation -70.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds