Wall clock time and date at job start Mon Mar 30 2020 07:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 N 1.46903 * 109.46939 * 119.99616 * 2 1 3 5 5 C 1.46902 * 110.99751 * 154.99951 * 4 2 1 6 6 C 1.50692 * 109.47168 * 180.02562 * 5 4 2 7 7 C 1.37824 * 120.17544 * 259.98048 * 6 5 4 8 8 C 1.38704 * 120.36786 * 180.02562 * 7 6 5 9 9 C 1.37935 * 120.64528 * 359.97438 * 8 7 6 10 10 C 1.38920 * 119.92263 * 359.97438 * 9 8 7 11 11 C 1.39475 * 120.17519 * 79.99927 * 6 5 4 12 12 C 1.46669 * 133.97419 * 359.97438 * 11 6 5 13 13 C 1.34299 * 107.05437 * 179.97438 * 12 11 6 14 14 N 1.37001 * 109.93808 * 359.97438 * 13 12 11 15 15 C 1.37207 * 125.08877 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00082 * 158.91838 * 15 14 13 17 17 C 1.38851 * 119.99885 * 338.91151 * 15 14 13 18 18 N 1.31438 * 120.00242 * 349.16939 * 17 15 14 19 19 Si 1.86801 * 119.99927 * 169.17198 * 17 15 14 20 20 H 1.48496 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47461 * 120.00481 * 19 17 15 22 22 H 1.48507 * 109.46884 * 240.00134 * 19 17 15 23 23 H 1.08998 * 109.47178 * 300.00098 * 1 2 3 24 24 H 1.09001 * 109.47182 * 59.99978 * 1 2 3 25 25 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47178 * 239.99902 * 2 1 3 27 27 H 1.09006 * 109.46980 * 59.99684 * 3 2 1 28 28 H 1.09003 * 109.47056 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47139 * 300.00049 * 3 2 1 30 30 H 1.00893 * 111.00407 * 278.95446 * 4 2 1 31 31 H 1.08998 * 109.46739 * 60.00076 * 5 4 2 32 32 H 1.09002 * 109.47343 * 300.00953 * 5 4 2 33 33 H 1.08001 * 119.81186 * 0.03651 * 7 6 5 34 34 H 1.08006 * 119.67623 * 180.27823 * 8 7 6 35 35 H 1.08002 * 120.04226 * 179.97438 * 9 8 7 36 36 H 1.08007 * 126.47275 * 359.97438 * 12 11 6 37 37 H 1.08002 * 125.02861 * 179.97438 * 13 12 11 38 38 H 0.97006 * 120.00147 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.3670 -1.2354 0.9808 6 6 3.8345 -1.9374 2.2295 7 6 4.6959 -1.3038 3.0991 8 6 5.1292 -1.9464 4.2495 9 6 4.7060 -3.2263 4.5417 10 6 3.8370 -3.8827 3.6793 11 6 3.3982 -3.2318 2.5113 12 6 2.5084 -4.1776 1.8294 13 6 2.4632 -5.2887 2.5823 14 7 3.2519 -5.1337 3.6917 15 6 3.4318 -6.0789 4.6699 16 1 4.2987 -6.0330 5.3123 17 6 2.4991 -7.0943 4.8340 18 7 1.3462 -7.0357 4.2056 19 14 2.8828 -8.5439 5.9480 20 1 4.2367 -8.3733 6.5337 21 1 1.8763 -8.6109 7.0377 22 1 2.8408 -9.8004 5.1575 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 2.0019 -0.0815 2.0023 31 1 4.0522 -0.4219 0.7426 32 1 3.3431 -1.9443 0.1531 33 1 5.0352 -0.3014 2.8837 34 1 5.8007 -1.4378 4.9255 35 1 5.0499 -3.7176 5.4399 36 1 1.9878 -4.0117 0.8977 37 1 1.8900 -6.1735 2.3479 38 1 0.6945 -7.7449 4.3205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080336789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:50 Heat of formation + Delta-G solvation = 47.460786 kcal Electronic energy + Delta-G solvation = -18759.363289 eV Core-core repulsion = 15987.515334 eV Total energy + Delta-G solvation = -2771.847955 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.97150 -37.41283 -35.93385 -33.09050 -32.34985 -30.13880 -28.48935 -27.60368 -27.06671 -24.79366 -24.12947 -20.80716 -20.60199 -20.50917 -19.53074 -17.17542 -15.65023 -15.33710 -15.09525 -15.01762 -14.47034 -14.32203 -13.78090 -13.38548 -13.23958 -12.98164 -12.42834 -12.23594 -12.08906 -11.93059 -11.67815 -11.52501 -11.29782 -11.15844 -11.11253 -10.82362 -10.73225 -10.58933 -10.46724 -10.24961 -9.70707 -9.17528 -8.42866 -8.02935 -7.03350 -6.80609 -6.47426 -4.23744 2.16863 2.69787 3.03168 3.05582 3.10907 3.84401 4.14489 4.45351 4.88715 4.92379 4.97836 5.15100 5.18206 5.37812 5.55661 5.59899 5.67990 5.84760 5.90118 5.91501 5.99805 6.03936 6.16728 6.21343 6.37224 6.42142 6.51013 6.62466 6.97477 7.11573 7.16647 7.20037 7.27960 7.39588 7.50485 7.65366 7.71655 7.79772 8.06984 8.27551 8.52652 9.07594 9.50633 10.33570 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.005192 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.119589 B = 5391.633601 C = 6166.345659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 C -0.182 4.182 4 N -0.672 5.672 5 C 0.113 3.887 6 C -0.055 4.055 7 C -0.167 4.167 8 C -0.141 4.141 9 C -0.106 4.106 10 C 0.050 3.950 11 C -0.091 4.091 12 C -0.267 4.267 13 C 0.082 3.918 14 N -0.293 5.293 15 C -0.339 4.339 16 H 0.104 0.896 17 C 0.041 3.959 18 N -0.853 5.853 19 Si 0.938 3.062 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.274 1.274 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.340 0.660 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.168 0.832 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 9.202 -5.161 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.241 4.241 4 N -0.303 5.303 5 C -0.015 4.015 6 C -0.056 4.056 7 C -0.188 4.188 8 C -0.161 4.161 9 C -0.126 4.126 10 C -0.062 4.062 11 C -0.098 4.098 12 C -0.292 4.292 13 C -0.052 4.052 14 N 0.043 4.957 15 C -0.467 4.467 16 H 0.122 0.878 17 C -0.166 4.166 18 N -0.485 5.485 19 Si 0.763 3.237 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.199 1.199 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.158 0.842 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.185 0.815 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.749 8.177 -5.078 9.655 hybrid contribution 0.540 0.132 0.690 0.886 sum 1.289 8.310 -4.388 9.485 Atomic orbital electron populations 1.21756 0.94687 1.02428 1.00773 1.21562 0.95747 0.91895 0.94094 1.22537 1.01181 0.98414 1.01984 1.60573 1.24722 1.40087 1.04908 1.20708 0.87992 0.96480 0.96341 1.18872 0.97941 0.93057 0.95685 1.20340 1.02809 0.99018 0.96584 1.20340 1.02818 0.94850 0.98073 1.19865 0.99175 0.94928 0.98673 1.18382 1.02363 0.86961 0.98492 1.18720 1.01085 0.93718 0.96240 1.21213 1.09607 0.94929 1.03406 1.22099 0.97156 0.99736 0.86197 1.40206 1.31620 1.08267 1.15562 1.19851 1.08930 1.04882 1.13020 0.87836 1.25474 0.93804 0.99606 0.97765 1.69913 1.05210 1.32752 1.40662 0.85689 0.79072 0.79803 0.79156 1.18877 1.20120 1.19949 0.92918 0.93070 0.91790 0.90796 0.92583 0.92894 0.92476 0.84217 0.95726 0.90846 0.88298 0.87729 0.87824 0.85965 0.81459 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.52 37.16 0.35 -1.27 16 2 C 0.08 0.96 3.20 -67.71 -0.22 0.74 16 3 C -0.18 -1.90 9.16 37.16 0.34 -1.56 16 4 N -0.67 -10.37 6.24 -107.99 -0.67 -11.04 16 5 C 0.11 1.86 5.53 -4.98 -0.03 1.83 16 6 C -0.05 -1.09 5.42 -104.32 -0.57 -1.66 16 7 C -0.17 -3.13 9.66 -39.56 -0.38 -3.51 16 8 C -0.14 -2.73 10.02 -39.52 -0.40 -3.13 16 9 C -0.11 -2.37 9.95 -39.44 -0.39 -2.76 16 10 C 0.05 1.25 6.75 -83.84 -0.57 0.68 16 11 C -0.09 -2.15 6.16 -105.09 -0.65 -2.80 16 12 C -0.27 -6.39 10.95 -37.57 -0.41 -6.80 16 13 C 0.08 2.13 9.89 -16.63 -0.16 1.97 16 14 N -0.29 -7.88 2.92 -59.74 -0.17 -8.05 16 15 C -0.34 -9.03 9.93 -14.92 -0.15 -9.17 16 16 H 0.10 2.64 7.85 -52.49 -0.41 2.22 16 17 C 0.04 1.05 5.35 -17.49 -0.09 0.95 16 18 N -0.85 -22.39 10.85 55.49 0.60 -21.79 16 19 Si 0.94 19.27 29.57 -169.99 -5.03 14.25 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.92 7.80 -51.93 -0.40 0.52 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.05 0.56 7.45 -51.93 -0.39 0.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.34 5.15 8.46 -39.30 -0.33 4.81 16 31 H 0.02 0.36 7.30 -51.93 -0.38 -0.02 16 32 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 33 H 0.10 1.57 8.03 -52.49 -0.42 1.15 16 34 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.12 2.67 8.06 -52.48 -0.42 2.24 16 37 H 0.17 4.37 6.34 -52.49 -0.33 4.03 16 38 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -27.89 316.84 -9.42 -37.31 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.60 Total: 11.03 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -3.32 Total: -26.47 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.25 Total: -40.88 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.89 -9.42 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080336789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.766 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds