Wall clock time and date at job start Mon Mar 30 2020 07:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 N 1.46903 * 109.46939 * 119.99616 * 2 1 3 5 5 C 1.46902 * 110.99751 * 154.99951 * 4 2 1 6 6 C 1.50692 * 109.47168 * 180.02562 * 5 4 2 7 7 C 1.37824 * 120.17544 * 259.98048 * 6 5 4 8 8 C 1.38704 * 120.36786 * 180.02562 * 7 6 5 9 9 C 1.37935 * 120.64528 * 359.97438 * 8 7 6 10 10 C 1.38920 * 119.92263 * 359.97438 * 9 8 7 11 11 C 1.39475 * 120.17519 * 79.99927 * 6 5 4 12 12 C 1.46669 * 133.97419 * 359.97438 * 11 6 5 13 13 C 1.34299 * 107.05437 * 179.97438 * 12 11 6 14 14 N 1.37001 * 109.93808 * 359.97438 * 13 12 11 15 15 C 1.37207 * 125.08877 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00082 * 158.91838 * 15 14 13 17 17 C 1.38851 * 119.99885 * 338.91151 * 15 14 13 18 18 N 1.31438 * 120.00242 * 349.16939 * 17 15 14 19 19 Si 1.86801 * 119.99927 * 169.17198 * 17 15 14 20 20 H 1.48496 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47461 * 120.00481 * 19 17 15 22 22 H 1.48507 * 109.46884 * 240.00134 * 19 17 15 23 23 H 1.08998 * 109.47178 * 300.00098 * 1 2 3 24 24 H 1.09001 * 109.47182 * 59.99978 * 1 2 3 25 25 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47178 * 239.99902 * 2 1 3 27 27 H 1.09006 * 109.46980 * 59.99684 * 3 2 1 28 28 H 1.09003 * 109.47056 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47139 * 300.00049 * 3 2 1 30 30 H 1.00893 * 111.00407 * 278.95446 * 4 2 1 31 31 H 1.08998 * 109.46739 * 60.00076 * 5 4 2 32 32 H 1.09002 * 109.47343 * 300.00953 * 5 4 2 33 33 H 1.08001 * 119.81186 * 0.03651 * 7 6 5 34 34 H 1.08006 * 119.67623 * 180.27823 * 8 7 6 35 35 H 1.08002 * 120.04226 * 179.97438 * 9 8 7 36 36 H 1.08007 * 126.47275 * 359.97438 * 12 11 6 37 37 H 1.08002 * 125.02861 * 179.97438 * 13 12 11 38 38 H 0.97006 * 120.00147 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.3670 -1.2354 0.9808 6 6 3.8345 -1.9374 2.2295 7 6 4.6959 -1.3038 3.0991 8 6 5.1292 -1.9464 4.2495 9 6 4.7060 -3.2263 4.5417 10 6 3.8370 -3.8827 3.6793 11 6 3.3982 -3.2318 2.5113 12 6 2.5084 -4.1776 1.8294 13 6 2.4632 -5.2887 2.5823 14 7 3.2519 -5.1337 3.6917 15 6 3.4318 -6.0789 4.6699 16 1 4.2987 -6.0330 5.3123 17 6 2.4991 -7.0943 4.8340 18 7 1.3462 -7.0357 4.2056 19 14 2.8828 -8.5439 5.9480 20 1 4.2367 -8.3733 6.5337 21 1 1.8763 -8.6109 7.0377 22 1 2.8408 -9.8004 5.1575 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 2.0019 -0.0815 2.0023 31 1 4.0522 -0.4219 0.7426 32 1 3.3431 -1.9443 0.1531 33 1 5.0352 -0.3014 2.8837 34 1 5.8007 -1.4378 4.9255 35 1 5.0499 -3.7176 5.4399 36 1 1.9878 -4.0117 0.8977 37 1 1.8900 -6.1735 2.3479 38 1 0.6945 -7.7449 4.3205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080336789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:42 Heat of formation + Delta-G solvation = 32.809828 kcal Electronic energy + Delta-G solvation = -18759.998602 eV Core-core repulsion = 15987.515334 eV Total energy + Delta-G solvation = -2772.483268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75594 -38.70958 -37.40961 -34.97295 -33.74733 -31.80324 -30.05112 -29.29014 -27.92289 -26.70058 -25.53671 -22.44819 -22.21715 -21.64628 -21.38275 -18.92057 -17.52184 -16.88665 -16.50378 -16.27263 -15.99007 -15.83764 -15.14698 -15.12034 -14.43905 -14.38416 -13.93832 -13.63647 -13.56913 -13.21639 -13.11367 -12.96304 -12.87575 -12.65892 -12.47929 -12.20634 -12.15451 -12.03630 -11.94861 -11.68744 -11.29339 -11.03257 -10.18579 -9.16995 -8.80832 -8.68243 -8.30695 -6.21545 0.48956 1.03204 1.35333 1.40887 1.51788 2.11614 2.27163 2.92500 3.10460 3.21623 3.60591 4.01414 4.11517 4.22917 4.35354 4.42862 4.46563 4.53370 4.68695 4.72572 4.81268 4.83068 4.91088 5.01445 5.02490 5.09948 5.12398 5.31819 5.34143 5.42008 5.42506 5.47540 5.52694 5.81545 5.85872 5.99270 6.24732 6.40419 6.50495 6.60212 6.61456 7.18610 7.60238 8.45353 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.005192 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.119589 B = 5391.633601 C = 6166.345659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 C -0.174 4.174 4 N -0.690 5.690 5 C 0.121 3.879 6 C -0.054 4.054 7 C -0.160 4.160 8 C -0.122 4.122 9 C -0.136 4.136 10 C 0.016 3.984 11 C -0.113 4.113 12 C -0.264 4.264 13 C 0.052 3.948 14 N -0.316 5.316 15 C -0.373 4.373 16 H 0.103 0.897 17 C -0.001 4.001 18 N -0.886 5.886 19 Si 1.012 2.988 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.267 1.267 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.341 0.659 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 11.445 -5.246 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 C -0.233 4.233 4 N -0.322 5.322 5 C -0.007 4.007 6 C -0.055 4.055 7 C -0.180 4.180 8 C -0.141 4.141 9 C -0.157 4.157 10 C -0.095 4.095 11 C -0.119 4.119 12 C -0.289 4.289 13 C -0.082 4.082 14 N 0.019 4.981 15 C -0.500 4.500 16 H 0.121 0.879 17 C -0.206 4.206 18 N -0.519 5.519 19 Si 0.832 3.168 20 H -0.181 1.181 21 H -0.195 1.195 22 H -0.191 1.191 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.159 0.841 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.122 0.878 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.800 10.448 -5.179 11.799 hybrid contribution 0.250 -0.365 0.658 0.793 sum 2.049 10.083 -4.520 11.238 Atomic orbital electron populations 1.21741 0.94374 1.01430 1.01854 1.21621 0.95944 0.93065 0.92684 1.22435 1.01158 0.96758 1.02928 1.60510 1.24178 1.41207 1.06262 1.20610 0.89179 0.96833 0.94120 1.19327 0.97294 0.91779 0.97124 1.20843 1.01202 1.00501 0.95443 1.20848 1.01475 0.93339 0.98442 1.20127 1.00120 0.96502 0.98957 1.19011 1.03419 0.87042 1.00019 1.19043 1.01624 0.95267 0.95964 1.21385 1.09451 0.94596 1.03481 1.22063 0.98501 1.00300 0.87331 1.40380 1.32622 1.09177 1.15908 1.20173 1.09682 1.06243 1.13889 0.87946 1.26494 0.93206 1.01814 0.99041 1.70018 1.06122 1.33791 1.41968 0.84617 0.79097 0.75950 0.77097 1.18118 1.19506 1.19139 0.92986 0.90831 0.93832 0.90941 0.92313 0.92764 0.90881 0.84072 0.92992 0.91746 0.84076 0.83825 0.87802 0.84638 0.82859 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.52 71.98 0.69 -2.28 16 2 C 0.08 1.72 3.20 44.92 0.14 1.86 16 3 C -0.17 -3.04 9.16 71.98 0.66 -2.38 16 4 N -0.69 -20.00 6.24 -495.58 -3.09 -23.09 16 5 C 0.12 3.69 5.53 85.55 0.47 4.17 16 6 C -0.05 -2.07 5.42 -19.67 -0.11 -2.18 16 7 C -0.16 -5.40 9.66 22.28 0.22 -5.18 16 8 C -0.12 -4.36 10.02 22.31 0.22 -4.14 16 9 C -0.14 -6.08 9.95 22.36 0.22 -5.86 16 10 C 0.02 0.81 6.75 38.92 0.26 1.07 16 11 C -0.11 -5.38 6.16 -20.17 -0.12 -5.51 16 12 C -0.26 -13.12 10.95 23.57 0.26 -12.86 16 13 C 0.05 2.83 9.89 82.99 0.82 3.65 16 14 N -0.32 -17.83 2.92 -342.90 -1.00 -18.83 16 15 C -0.37 -20.76 9.93 84.00 0.83 -19.93 16 16 H 0.10 5.47 7.85 -2.91 -0.02 5.44 16 17 C 0.00 -0.07 5.35 84.90 0.45 0.39 16 18 N -0.89 -48.49 10.85 21.65 0.23 -48.25 16 19 Si 1.01 40.26 29.57 68.60 2.03 42.29 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.66 7.80 -2.39 -0.02 1.64 16 27 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 28 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.34 9.56 8.46 -89.70 -0.76 8.80 16 31 H 0.05 1.31 7.30 -2.39 -0.02 1.29 16 32 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 33 H 0.14 3.63 8.03 -2.91 -0.02 3.61 16 34 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.14 6.10 8.06 -2.91 -0.02 6.08 16 37 H 0.15 8.61 6.34 -2.91 -0.02 8.59 16 38 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -63.09 316.84 3.48 -59.61 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: 0.29 Total: 37.42 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 5.02 Total: -49.15 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -3.86 Total: -90.17 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -63.09 3.48 -59.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080336789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.417 kcal (2) G-P(sol) polarization free energy of solvation -63.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds