Wall clock time and date at job start Mon Mar 30 2020 07:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30107 * 124.95629 * 2 1 4 4 C 1.35784 * 109.64603 * 180.24984 * 3 2 1 5 5 C 1.39743 * 133.59952 * 179.75797 * 4 3 2 6 6 C 1.36603 * 119.88241 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.66307 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47413 * 89.99637 * 7 6 5 9 9 H 1.08000 * 120.00397 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00342 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00383 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99557 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47066 * 89.99832 * 12 10 8 14 14 H 1.48504 * 109.46906 * 210.00201 * 12 10 8 15 15 H 1.48501 * 109.47064 * 329.99567 * 12 10 8 16 16 C 1.38773 * 120.67027 * 359.97438 * 6 5 4 17 17 C 1.37857 * 120.45147 * 0.04628 * 16 6 5 18 18 C 1.38827 * 119.69121 * 359.95588 * 17 16 6 19 19 N 1.36041 * 124.94935 * 179.83547 * 2 1 3 20 20 C 1.46506 * 126.34381 * 0.02562 * 19 2 1 21 21 C 1.53001 * 109.46739 * 238.64092 * 20 19 2 22 22 C 1.52999 * 109.47114 * 118.64923 * 20 19 2 23 23 H 1.09000 * 109.47715 * 272.11096 * 1 2 3 24 24 H 1.09006 * 109.47155 * 32.11459 * 1 2 3 25 25 H 1.09001 * 109.47427 * 152.10688 * 1 2 3 26 26 H 1.08001 * 120.05557 * 359.97438 * 5 4 3 27 27 H 1.09000 * 109.46809 * 209.99614 * 7 6 5 28 28 H 1.09002 * 109.46718 * 329.99571 * 7 6 5 29 29 H 0.96994 * 119.99816 * 180.02562 * 11 10 8 30 30 H 1.08000 * 119.77064 * 180.02562 * 16 6 5 31 31 H 1.08006 * 120.15152 * 179.97438 * 17 16 6 32 32 H 1.08992 * 109.47584 * 358.64114 * 20 19 2 33 33 H 1.09000 * 109.47445 * 293.77992 * 21 20 19 34 34 H 1.09001 * 109.47268 * 173.77506 * 21 20 19 35 35 H 1.09007 * 109.46719 * 53.77853 * 21 20 19 36 36 H 1.08999 * 109.47356 * 59.98832 * 22 20 19 37 37 H 1.08996 * 109.47125 * 179.97438 * 22 20 19 38 38 H 1.09003 * 109.46788 * 299.99712 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5620 0.7078 -0.0056 5 6 4.7587 1.4294 -0.0123 6 6 5.9532 0.7666 -0.0174 7 6 7.2407 1.5497 -0.0241 8 6 7.6765 1.8120 1.3944 9 1 7.0811 1.4477 2.2185 10 6 8.8361 2.5163 1.6403 11 7 9.2168 2.7447 2.8783 12 14 9.8666 3.1458 0.2150 13 1 9.4124 4.5090 -0.1599 14 1 11.2946 3.1935 0.6197 15 1 9.7119 2.2352 -0.9478 16 6 5.9930 -0.6205 -0.0154 17 6 4.8251 -1.3530 -0.0092 18 6 3.6018 -0.6967 -0.0040 19 7 2.2863 -1.1151 0.0032 20 6 1.8164 -2.5027 0.0067 21 6 2.3634 -3.2232 1.2406 22 6 2.3083 -3.2109 -1.2572 23 1 -0.3634 0.0379 1.0269 24 1 -0.3634 0.8705 -0.5464 25 1 -0.3634 -0.9083 -0.4808 26 1 4.7392 2.5093 -0.0144 27 1 8.0111 0.9777 -0.5410 28 1 7.0861 2.4985 -0.5381 29 1 10.0324 3.2404 3.0512 30 1 6.9454 -1.1297 -0.0191 31 1 4.8617 -2.4324 -0.0081 32 1 0.7268 -2.5174 0.0307 33 1 3.4475 -3.3059 1.1623 34 1 1.9266 -4.2199 1.3028 35 1 2.1059 -2.6571 2.1358 36 1 3.3980 -3.1962 -1.2812 37 1 1.9591 -4.2434 -1.2544 38 1 1.9187 -2.6976 -2.1363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082600443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:26 Heat of formation + Delta-G solvation = 57.211810 kcal Electronic energy + Delta-G solvation = -18842.958339 eV Core-core repulsion = 16071.533220 eV Total energy + Delta-G solvation = -2771.425119 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88495 -37.46409 -35.95786 -33.15068 -31.60128 -31.13297 -30.08621 -28.38871 -27.55429 -26.42427 -23.23191 -21.95654 -21.71869 -20.11226 -19.66050 -16.72596 -16.60745 -16.51603 -15.52018 -14.85227 -14.59826 -14.21968 -13.78847 -13.51484 -13.34432 -13.01222 -12.97086 -12.86505 -12.50359 -12.48019 -12.33115 -11.83873 -11.63701 -11.56589 -11.28515 -11.00585 -10.83646 -10.41624 -10.06956 -10.00922 -9.78133 -9.47612 -9.28358 -8.52972 -7.61293 -7.42145 -6.02029 -4.00619 1.46722 2.16775 2.75479 3.13750 3.33429 3.40608 3.43528 4.33456 4.36626 4.46483 4.49063 4.64481 4.69310 4.81073 5.17371 5.24164 5.28382 5.32008 5.35363 5.39332 5.46113 5.51902 5.62532 5.72272 5.84571 5.89302 5.98067 6.12398 6.13499 6.40378 6.69529 6.91291 7.00485 7.04662 7.12956 7.45792 7.53773 7.64360 7.75680 8.29796 8.55875 9.04266 9.58462 11.11115 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.004868 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.429573 B = 5750.345369 C = 6065.658033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.260 3.740 3 N -0.494 5.494 4 C 0.047 3.953 5 C -0.071 4.071 6 C -0.042 4.042 7 C 0.018 3.982 8 C -0.511 4.511 9 H 0.074 0.926 10 C 0.069 3.931 11 N -0.901 5.901 12 Si 0.877 3.123 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.264 1.264 16 C -0.088 4.088 17 C -0.124 4.124 18 C 0.040 3.960 19 N -0.489 5.489 20 C 0.136 3.864 21 C -0.166 4.166 22 C -0.166 4.166 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.028 0.972 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 -12.947 -7.770 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.004 4.004 3 N -0.214 5.214 4 C -0.070 4.070 5 C -0.091 4.091 6 C -0.044 4.044 7 C -0.019 4.019 8 C -0.549 4.549 9 H 0.092 0.908 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.704 3.296 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.189 1.189 16 C -0.108 4.108 17 C -0.145 4.145 18 C -0.067 4.067 19 N -0.182 5.182 20 C 0.033 3.967 21 C -0.224 4.224 22 C -0.224 4.224 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.142 0.858 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.788 -12.151 -7.652 22.092 hybrid contribution 0.915 -0.473 -0.466 1.130 sum -15.873 -12.624 -8.118 21.846 Atomic orbital electron populations 1.20275 0.85168 1.03828 1.03757 1.23417 0.95332 0.81105 1.00594 1.70319 1.01449 1.27245 1.22432 1.19004 0.91550 0.90446 1.06026 1.19888 0.88449 0.99723 1.01015 1.19733 0.95767 0.93440 0.95454 1.18771 0.89924 0.94619 0.98567 1.20968 1.08151 1.35224 0.90583 0.90827 1.24997 0.97243 0.95539 0.95478 1.69904 1.24158 1.41033 1.18914 0.86812 0.79585 0.79859 0.83305 1.20147 1.21338 1.18889 1.20901 0.96898 0.93863 0.99108 1.19863 0.89206 0.98418 1.06985 1.18678 0.84884 0.95000 1.08147 1.45298 1.04760 1.06246 1.61896 1.21283 0.99676 0.79015 0.96721 1.22210 1.02787 1.00385 0.97021 1.22210 1.03056 1.00465 0.96658 0.89883 0.88976 0.90868 0.85758 0.95337 0.95771 0.92671 0.85517 0.86944 0.88434 0.91283 0.90840 0.91757 0.91295 0.90808 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.04 36.00 0.36 -0.30 16 2 C 0.26 3.86 7.85 -154.82 -1.22 2.65 16 3 N -0.49 -9.40 11.27 -8.23 -0.09 -9.49 16 4 C 0.05 0.95 7.23 -84.70 -0.61 0.34 16 5 C -0.07 -1.54 9.67 -39.61 -0.38 -1.93 16 6 C -0.04 -0.91 5.03 -105.01 -0.53 -1.44 16 7 C 0.02 0.45 4.15 -29.04 -0.12 0.33 16 8 C -0.51 -14.76 9.65 -34.44 -0.33 -15.09 16 9 H 0.07 2.34 7.98 -52.49 -0.42 1.92 16 10 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 11 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 12 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 16 C -0.09 -1.70 9.67 -39.52 -0.38 -2.08 16 17 C -0.12 -2.09 8.90 -39.50 -0.35 -2.44 16 18 C 0.04 0.70 6.22 -83.99 -0.52 0.18 16 19 N -0.49 -6.94 2.65 -104.11 -0.28 -7.21 16 20 C 0.14 1.31 3.50 -67.93 -0.24 1.07 16 21 C -0.17 -1.53 9.17 37.16 0.34 -1.19 16 22 C -0.17 -1.42 9.27 37.16 0.34 -1.08 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.47 6.96 -51.93 -0.36 0.11 16 26 H 0.12 2.69 8.06 -52.49 -0.42 2.27 16 27 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 28 H 0.02 0.58 7.50 -51.93 -0.39 0.19 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.11 1.55 6.00 -52.48 -0.31 1.23 16 32 H 0.10 0.69 6.59 -51.93 -0.34 0.35 16 33 H 0.07 0.72 6.41 -51.93 -0.33 0.39 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 36 H 0.07 0.69 6.45 -51.93 -0.34 0.35 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -34.06 310.24 -8.74 -42.80 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.41 Total: -1.43 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -3.74 Total: -19.07 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.40 Total: -43.93 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.06 -8.74 -42.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.013 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds