Wall clock time and date at job start Mon Mar 30 2020 07:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30107 * 124.95629 * 2 1 4 4 C 1.35784 * 109.64603 * 180.24984 * 3 2 1 5 5 C 1.39743 * 133.59952 * 179.75797 * 4 3 2 6 6 C 1.36603 * 119.88241 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.66307 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47413 * 89.99637 * 7 6 5 9 9 H 1.08000 * 120.00397 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00342 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00383 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99557 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47066 * 89.99832 * 12 10 8 14 14 H 1.48504 * 109.46906 * 210.00201 * 12 10 8 15 15 H 1.48501 * 109.47064 * 329.99567 * 12 10 8 16 16 C 1.38773 * 120.67027 * 359.97438 * 6 5 4 17 17 C 1.37857 * 120.45147 * 0.04628 * 16 6 5 18 18 C 1.38827 * 119.69121 * 359.95588 * 17 16 6 19 19 N 1.36041 * 124.94935 * 179.83547 * 2 1 3 20 20 C 1.46506 * 126.34381 * 0.02562 * 19 2 1 21 21 C 1.53001 * 109.46739 * 238.64092 * 20 19 2 22 22 C 1.52999 * 109.47114 * 118.64923 * 20 19 2 23 23 H 1.09000 * 109.47715 * 272.11096 * 1 2 3 24 24 H 1.09006 * 109.47155 * 32.11459 * 1 2 3 25 25 H 1.09001 * 109.47427 * 152.10688 * 1 2 3 26 26 H 1.08001 * 120.05557 * 359.97438 * 5 4 3 27 27 H 1.09000 * 109.46809 * 209.99614 * 7 6 5 28 28 H 1.09002 * 109.46718 * 329.99571 * 7 6 5 29 29 H 0.96994 * 119.99816 * 180.02562 * 11 10 8 30 30 H 1.08000 * 119.77064 * 180.02562 * 16 6 5 31 31 H 1.08006 * 120.15152 * 179.97438 * 17 16 6 32 32 H 1.08992 * 109.47584 * 358.64114 * 20 19 2 33 33 H 1.09000 * 109.47445 * 293.77992 * 21 20 19 34 34 H 1.09001 * 109.47268 * 173.77506 * 21 20 19 35 35 H 1.09007 * 109.46719 * 53.77853 * 21 20 19 36 36 H 1.08999 * 109.47356 * 59.98832 * 22 20 19 37 37 H 1.08996 * 109.47125 * 179.97438 * 22 20 19 38 38 H 1.09003 * 109.46788 * 299.99712 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5620 0.7078 -0.0056 5 6 4.7587 1.4294 -0.0123 6 6 5.9532 0.7666 -0.0174 7 6 7.2407 1.5497 -0.0241 8 6 7.6765 1.8120 1.3944 9 1 7.0811 1.4477 2.2185 10 6 8.8361 2.5163 1.6403 11 7 9.2168 2.7447 2.8783 12 14 9.8666 3.1458 0.2150 13 1 9.4124 4.5090 -0.1599 14 1 11.2946 3.1935 0.6197 15 1 9.7119 2.2352 -0.9478 16 6 5.9930 -0.6205 -0.0154 17 6 4.8251 -1.3530 -0.0092 18 6 3.6018 -0.6967 -0.0040 19 7 2.2863 -1.1151 0.0032 20 6 1.8164 -2.5027 0.0067 21 6 2.3634 -3.2232 1.2406 22 6 2.3083 -3.2109 -1.2572 23 1 -0.3634 0.0379 1.0269 24 1 -0.3634 0.8705 -0.5464 25 1 -0.3634 -0.9083 -0.4808 26 1 4.7392 2.5093 -0.0144 27 1 8.0111 0.9777 -0.5410 28 1 7.0861 2.4985 -0.5381 29 1 10.0324 3.2404 3.0512 30 1 6.9454 -1.1297 -0.0191 31 1 4.8617 -2.4324 -0.0081 32 1 0.7268 -2.5174 0.0307 33 1 3.4475 -3.3059 1.1623 34 1 1.9266 -4.2199 1.3028 35 1 2.1059 -2.6571 2.1358 36 1 3.3980 -3.1962 -1.2812 37 1 1.9591 -4.2434 -1.2544 38 1 1.9187 -2.6976 -2.1363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082600443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:21 Heat of formation + Delta-G solvation = 36.644580 kcal Electronic energy + Delta-G solvation = -18843.850201 eV Core-core repulsion = 16071.533220 eV Total energy + Delta-G solvation = -2772.316981 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.15306 -38.92028 -36.94506 -35.17106 -33.22732 -32.27404 -31.39252 -29.94659 -28.21721 -27.93932 -24.88459 -23.21671 -23.12888 -21.60439 -20.76059 -18.95959 -17.91485 -17.73149 -16.66235 -16.44855 -15.93740 -15.63535 -15.18800 -14.67064 -14.56625 -14.28185 -14.13972 -14.00491 -13.69842 -13.48567 -13.33948 -13.24687 -13.15359 -12.61840 -12.51919 -12.34303 -12.20918 -12.01552 -11.78312 -11.69516 -11.51417 -11.14498 -10.83244 -10.77162 -9.04174 -8.90595 -8.28747 -6.33901 0.07717 0.65489 1.38091 1.39468 1.51900 1.68844 1.85253 2.36894 2.96448 3.05306 3.27920 3.55722 3.59940 3.96000 4.01409 4.15236 4.18591 4.35967 4.44454 4.55214 4.58538 4.64121 4.70374 4.79389 4.80174 4.83834 4.92310 5.05053 5.07406 5.15821 5.21145 5.22367 5.29324 5.52732 5.55260 5.65549 5.95450 6.01788 6.29016 6.36126 6.71738 6.99747 7.29274 8.88160 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.004868 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.429573 B = 5750.345369 C = 6065.658033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.275 3.725 3 N -0.546 5.546 4 C 0.020 3.980 5 C -0.098 4.098 6 C -0.064 4.064 7 C 0.026 3.974 8 C -0.520 4.520 9 H 0.024 0.976 10 C 0.008 3.992 11 N -0.951 5.951 12 Si 0.952 3.048 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.242 1.242 16 C -0.108 4.108 17 C -0.102 4.102 18 C 0.036 3.964 19 N -0.482 5.482 20 C 0.126 3.874 21 C -0.165 4.165 22 C -0.163 4.163 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.041 0.959 28 H 0.025 0.975 29 H 0.268 0.732 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.106 0.894 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.615 -15.555 -9.598 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.010 3.990 3 N -0.267 5.267 4 C -0.097 4.097 5 C -0.118 4.118 6 C -0.066 4.066 7 C -0.011 4.011 8 C -0.558 4.558 9 H 0.042 0.958 10 C -0.189 4.189 11 N -0.591 5.591 12 Si 0.775 3.225 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.165 1.165 16 C -0.128 4.128 17 C -0.122 4.122 18 C -0.072 4.072 19 N -0.174 5.174 20 C 0.026 3.974 21 C -0.223 4.223 22 C -0.221 4.221 23 H 0.119 0.881 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.816 -14.806 -9.489 25.755 hybrid contribution 1.286 0.235 0.193 1.322 sum -17.530 -14.571 -9.296 24.618 Atomic orbital electron populations 1.20588 0.80825 1.06053 1.05479 1.24539 0.97447 0.80314 0.96699 1.70303 1.01151 1.29744 1.25544 1.19167 0.91907 0.92027 1.06588 1.19810 0.89706 0.99040 1.03244 1.19606 0.94614 0.94733 0.97643 1.18618 0.91628 0.95279 0.95610 1.21163 1.07804 1.35078 0.91720 0.95772 1.25997 0.98652 0.95600 0.98665 1.70064 1.25109 1.42310 1.21651 0.85629 0.77433 0.79641 0.79812 1.19387 1.20552 1.16474 1.21023 0.98509 0.92820 1.00412 1.20143 0.88097 0.99964 1.04013 1.18806 0.86794 0.94047 1.07600 1.45700 1.03136 1.08208 1.60313 1.21818 1.01820 0.76298 0.97514 1.22228 1.02018 1.01992 0.96019 1.22215 1.01987 1.02195 0.95672 0.88056 0.88487 0.87062 0.87702 0.94120 0.95705 0.92344 0.84343 0.83305 0.84758 0.92847 0.87360 0.93291 0.92956 0.87529 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.04 71.23 0.72 -0.32 16 2 C 0.28 7.63 7.85 137.92 1.08 8.72 16 3 N -0.55 -21.00 11.27 -179.97 -2.03 -23.03 16 4 C 0.02 0.85 7.23 39.45 0.29 1.14 16 5 C -0.10 -4.55 9.67 22.25 0.22 -4.34 16 6 C -0.06 -2.93 5.03 -20.12 -0.10 -3.03 16 7 C 0.03 1.30 4.15 29.10 0.12 1.43 16 8 C -0.52 -31.56 9.65 25.60 0.25 -31.31 16 9 H 0.02 1.65 7.98 -2.91 -0.02 1.62 16 10 C 0.01 0.46 5.47 84.66 0.46 0.92 16 11 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 12 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 16 C -0.11 -4.22 9.67 22.31 0.22 -4.00 16 17 C -0.10 -3.35 8.90 22.32 0.20 -3.16 16 18 C 0.04 1.25 6.22 38.86 0.24 1.49 16 19 N -0.48 -12.53 2.65 -483.31 -1.28 -13.81 16 20 C 0.13 1.88 3.50 44.99 0.16 2.04 16 21 C -0.16 -2.42 9.17 71.98 0.66 -1.76 16 22 C -0.16 -2.10 9.27 71.98 0.67 -1.43 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.11 0.79 6.96 -2.39 -0.02 0.77 16 26 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 27 H 0.04 1.92 7.14 -2.39 -0.02 1.91 16 28 H 0.02 1.22 7.50 -2.39 -0.02 1.21 16 29 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 30 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.15 3.74 6.00 -2.91 -0.02 3.72 16 32 H 0.13 1.08 6.59 -2.39 -0.02 1.07 16 33 H 0.05 0.96 6.41 -2.39 -0.02 0.94 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 0.86 6.45 -2.39 -0.02 0.85 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -80.26 310.24 5.03 -75.22 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.99 Total: 9.25 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: 5.17 Total: -33.62 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.01 Total: -97.92 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -80.26 5.03 -75.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.869 kcal (2) G-P(sol) polarization free energy of solvation -80.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds