Wall clock time and date at job start Mon Mar 30 2020 07:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30105 * 124.94948 * 59.69343 * 4 2 1 6 6 C 1.35790 * 109.64181 * 179.89504 * 5 4 2 7 7 C 1.39743 * 133.60099 * 180.10459 * 6 5 4 8 8 C 1.36600 * 119.88701 * 180.28286 * 7 6 5 9 9 C 1.50695 * 119.66430 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47039 * 90.00382 * 9 8 7 11 11 H 1.07998 * 119.99908 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99527 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99998 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47417 * 89.99642 * 14 12 10 16 16 H 1.48508 * 109.46956 * 209.99725 * 14 12 10 17 17 H 1.48500 * 109.47009 * 329.99323 * 14 12 10 18 18 C 1.38779 * 120.66893 * 359.97438 * 8 7 6 19 19 C 1.37860 * 120.44826 * 359.97438 * 18 8 7 20 20 C 1.38834 * 119.69149 * 0.03983 * 19 18 8 21 21 N 1.36037 * 124.94805 * 239.99985 * 4 2 1 22 22 C 1.46501 * 126.35010 * 359.94177 * 21 4 2 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.08005 * 120.05345 * 0.26281 * 7 6 5 31 31 H 1.09000 * 109.47051 * 209.99469 * 9 8 7 32 32 H 1.09001 * 109.47208 * 329.99785 * 9 8 7 33 33 H 0.97002 * 119.99056 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.77804 * 180.02562 * 18 8 7 35 35 H 1.07998 * 120.15001 * 180.02562 * 19 18 8 36 36 H 1.08991 * 109.47316 * 89.99925 * 22 21 4 37 37 H 1.09003 * 109.46854 * 210.00013 * 22 21 4 38 38 H 1.09002 * 109.46689 * 329.99808 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7734 -0.3539 -2.4548 6 6 2.3825 -1.2078 -3.3173 7 6 2.4404 -1.2913 -4.7110 8 6 3.1507 -2.2963 -5.3037 9 6 3.2103 -2.3812 -6.8071 10 6 4.3905 -1.5895 -7.3086 11 1 5.0328 -1.0758 -6.6086 12 6 4.6495 -1.5200 -8.6610 13 7 3.8669 -2.1451 -9.5134 14 14 6.1119 -0.5380 -9.2826 15 1 7.3060 -1.4181 -9.3514 16 1 5.8112 -0.0051 -10.6358 17 1 6.3811 0.5899 -8.3550 18 6 3.8188 -3.2394 -4.5355 19 6 3.7765 -3.1761 -3.1590 20 6 3.0593 -2.1618 -2.5389 21 7 2.8178 -1.8210 -1.2231 22 6 3.3163 -2.5241 -0.0385 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.9242 -0.5625 -5.3184 31 1 3.3176 -3.4233 -7.1082 32 1 2.2925 -1.9733 -7.2307 33 1 4.0495 -2.0965 -10.4648 34 1 4.3764 -4.0277 -5.0192 35 1 4.2985 -3.9123 -2.5658 36 1 2.6009 -3.2917 0.2563 37 1 4.2746 -2.9897 -0.2688 38 1 3.4444 -1.8138 0.7784 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082600445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:22 Heat of formation + Delta-G solvation = 51.031915 kcal Electronic energy + Delta-G solvation = -18582.994353 eV Core-core repulsion = 15811.301254 eV Total energy + Delta-G solvation = -2771.693099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.80285 -37.47463 -35.16155 -33.91839 -32.98845 -30.70284 -28.89417 -27.34269 -27.29293 -26.26702 -23.80190 -22.61476 -21.22032 -20.36547 -19.08095 -16.79404 -16.66354 -16.24126 -15.64704 -14.95175 -14.45857 -14.28868 -13.92536 -13.50040 -13.43879 -13.17122 -12.98275 -12.70808 -12.34145 -12.22000 -11.71103 -11.59001 -11.38298 -11.24384 -11.12028 -10.91330 -10.67183 -10.54738 -10.43994 -9.95934 -9.62760 -9.39406 -9.29509 -8.37330 -7.59258 -7.39437 -5.99033 -4.02403 1.50298 2.21072 2.82022 3.16945 3.34066 3.40233 3.45380 4.22267 4.43200 4.58380 4.61316 4.67297 4.94142 4.95863 5.04253 5.12964 5.26642 5.35682 5.48198 5.49876 5.60622 5.70509 5.72415 5.82356 5.98039 6.07985 6.11536 6.18324 6.19558 6.49701 6.76454 7.00178 7.15288 7.20612 7.46027 7.53812 7.67485 7.89940 7.97207 8.32077 8.38460 9.02857 9.61128 11.10707 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.004520 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.215896 B = 6192.861210 C = 6492.822727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.141 4.141 4 C 0.267 3.733 5 N -0.487 5.487 6 C 0.048 3.952 7 C -0.074 4.074 8 C -0.046 4.046 9 C 0.052 3.948 10 C -0.510 4.510 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.088 4.088 19 C -0.125 4.125 20 C 0.028 3.972 21 N -0.498 5.498 22 C 0.083 3.917 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 0.459 21.345 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.207 5.207 6 C -0.069 4.069 7 C -0.093 4.093 8 C -0.048 4.048 9 C 0.015 3.985 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.107 4.107 19 C -0.147 4.147 20 C -0.078 4.078 21 N -0.191 5.191 22 C -0.060 4.060 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.654 1.032 20.982 21.323 hybrid contribution 1.457 -0.302 -0.112 1.492 sum -2.196 0.730 20.870 20.998 Atomic orbital electron populations 1.21782 0.92858 1.02244 1.02878 1.19643 0.96858 0.95850 0.90801 1.21794 1.01071 0.94114 1.02895 1.23347 0.93871 0.87223 0.95370 1.70246 1.24754 1.27494 0.98173 1.19044 0.99822 0.93906 0.94118 1.19924 1.00669 0.99056 0.89700 1.20174 0.93168 0.92376 0.99078 1.18323 0.97962 0.98132 0.84108 1.21090 1.11106 1.30933 0.91707 0.92483 1.24999 0.96663 0.95747 0.96887 1.69962 1.37977 1.43104 1.02348 0.86556 0.82734 0.80404 0.78140 1.20647 1.21176 1.19821 1.20940 0.98798 0.99356 0.91635 1.19810 1.02425 0.97833 0.94588 1.18767 1.04938 1.00869 0.83231 1.44945 1.43846 1.25090 1.05191 1.21834 1.00441 0.97376 0.86359 0.91860 0.92745 0.91029 0.90094 0.91852 0.92712 0.91009 0.85778 0.95213 0.95198 0.92898 0.85503 0.87110 0.91322 0.90040 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.17 37.16 0.34 -0.99 16 2 C -0.01 -0.12 3.24 -91.77 -0.30 -0.41 16 3 C -0.14 -1.38 9.17 37.16 0.34 -1.04 16 4 C 0.27 4.04 6.37 -154.83 -0.99 3.06 16 5 N -0.49 -9.24 11.26 -8.23 -0.09 -9.33 16 6 C 0.05 0.99 7.23 -84.70 -0.61 0.38 16 7 C -0.07 -1.63 9.67 -39.61 -0.38 -2.02 16 8 C -0.05 -1.03 5.03 -105.02 -0.53 -1.56 16 9 C 0.05 1.35 5.08 -29.04 -0.15 1.20 16 10 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.09 -1.74 9.67 -39.52 -0.38 -2.12 16 19 C -0.13 -2.19 10.05 -39.50 -0.40 -2.59 16 20 C 0.03 0.52 6.87 -83.99 -0.58 -0.06 16 21 N -0.50 -7.35 3.21 -118.51 -0.38 -7.72 16 22 C 0.08 0.76 10.81 59.85 0.65 1.41 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.64 6.66 -51.93 -0.35 0.29 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.12 2.76 8.06 -52.48 -0.42 2.34 16 31 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.55 7.01 -51.93 -0.36 0.18 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -32.99 320.71 -9.06 -42.05 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.74 Total: -2.72 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.39 Total: -18.00 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.26 Total: -43.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.99 -9.06 -42.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.081 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds