Wall clock time and date at job start Mon Mar 30 2020 07:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30105 * 124.94948 * 59.69343 * 4 2 1 6 6 C 1.35790 * 109.64181 * 179.89504 * 5 4 2 7 7 C 1.39743 * 133.60099 * 180.10459 * 6 5 4 8 8 C 1.36600 * 119.88701 * 180.28286 * 7 6 5 9 9 C 1.50695 * 119.66430 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47039 * 90.00382 * 9 8 7 11 11 H 1.07998 * 119.99908 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99527 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99998 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47417 * 89.99642 * 14 12 10 16 16 H 1.48508 * 109.46956 * 209.99725 * 14 12 10 17 17 H 1.48500 * 109.47009 * 329.99323 * 14 12 10 18 18 C 1.38779 * 120.66893 * 359.97438 * 8 7 6 19 19 C 1.37860 * 120.44826 * 359.97438 * 18 8 7 20 20 C 1.38834 * 119.69149 * 0.03983 * 19 18 8 21 21 N 1.36037 * 124.94805 * 239.99985 * 4 2 1 22 22 C 1.46501 * 126.35010 * 359.94177 * 21 4 2 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.08005 * 120.05345 * 0.26281 * 7 6 5 31 31 H 1.09000 * 109.47051 * 209.99469 * 9 8 7 32 32 H 1.09001 * 109.47208 * 329.99785 * 9 8 7 33 33 H 0.97002 * 119.99056 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.77804 * 180.02562 * 18 8 7 35 35 H 1.07998 * 120.15001 * 180.02562 * 19 18 8 36 36 H 1.08991 * 109.47316 * 89.99925 * 22 21 4 37 37 H 1.09003 * 109.46854 * 210.00013 * 22 21 4 38 38 H 1.09002 * 109.46689 * 329.99808 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7734 -0.3539 -2.4548 6 6 2.3825 -1.2078 -3.3173 7 6 2.4404 -1.2913 -4.7110 8 6 3.1507 -2.2963 -5.3037 9 6 3.2103 -2.3812 -6.8071 10 6 4.3905 -1.5895 -7.3086 11 1 5.0328 -1.0758 -6.6086 12 6 4.6495 -1.5200 -8.6610 13 7 3.8669 -2.1451 -9.5134 14 14 6.1119 -0.5380 -9.2826 15 1 7.3060 -1.4181 -9.3514 16 1 5.8112 -0.0051 -10.6358 17 1 6.3811 0.5899 -8.3550 18 6 3.8188 -3.2394 -4.5355 19 6 3.7765 -3.1761 -3.1590 20 6 3.0593 -2.1618 -2.5389 21 7 2.8178 -1.8210 -1.2231 22 6 3.3163 -2.5241 -0.0385 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.9242 -0.5625 -5.3184 31 1 3.3176 -3.4233 -7.1082 32 1 2.2925 -1.9733 -7.2307 33 1 4.0495 -2.0965 -10.4648 34 1 4.3764 -4.0277 -5.0192 35 1 4.2985 -3.9123 -2.5658 36 1 2.6009 -3.2917 0.2563 37 1 4.2746 -2.9897 -0.2688 38 1 3.4444 -1.8138 0.7784 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082600445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:20 Heat of formation + Delta-G solvation = 32.112650 kcal Electronic energy + Delta-G solvation = -18583.814754 eV Core-core repulsion = 15811.301254 eV Total energy + Delta-G solvation = -2772.513500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.11369 -38.96277 -36.18911 -35.19109 -34.94861 -32.43411 -30.43571 -28.79977 -28.04442 -27.58619 -25.42464 -24.14963 -22.59490 -21.88344 -20.17560 -18.51525 -18.08701 -17.89088 -16.78092 -16.67488 -15.97465 -15.48496 -15.09874 -14.81038 -14.62375 -14.51102 -14.19702 -13.91248 -13.57652 -13.38425 -13.28744 -13.03167 -12.72721 -12.53767 -12.43518 -12.37323 -12.28788 -11.98913 -11.84208 -11.56705 -11.45538 -11.12875 -10.83027 -10.59535 -9.07765 -8.92274 -8.18519 -6.32351 0.07624 0.65102 1.39051 1.40840 1.52341 1.71596 1.85406 2.40404 2.99148 3.10619 3.16018 3.52896 3.88178 3.99714 4.09801 4.15824 4.20011 4.32236 4.46156 4.52736 4.59900 4.69958 4.72349 4.82248 4.83562 4.94872 4.95280 5.05742 5.26031 5.30386 5.35379 5.35658 5.37176 5.54293 5.59587 5.75413 6.00403 6.05276 6.21241 6.31295 6.79314 6.99652 7.35754 8.90152 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029900 B = 0.004520 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.215896 B = 6192.861210 C = 6492.822727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.011 4.011 3 C -0.138 4.138 4 C 0.283 3.717 5 N -0.533 5.533 6 C 0.024 3.976 7 C -0.099 4.099 8 C -0.064 4.064 9 C 0.061 3.939 10 C -0.529 4.529 11 H 0.051 0.949 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.965 3.035 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.271 1.271 18 C -0.106 4.106 19 C -0.099 4.099 20 C 0.023 3.977 21 N -0.492 5.492 22 C 0.069 3.931 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.013 0.987 32 H -0.002 1.002 33 H 0.266 0.734 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 0.297 25.324 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.196 4.196 4 C 0.017 3.983 5 N -0.254 5.254 6 C -0.093 4.093 7 C -0.119 4.119 8 C -0.067 4.067 9 C 0.025 3.975 10 C -0.566 4.566 11 H 0.069 0.931 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.789 3.211 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.195 1.195 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.086 4.086 21 N -0.183 5.183 22 C -0.072 4.072 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.140 0.860 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.032 0.968 32 H 0.017 0.983 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.281 0.849 25.006 25.124 hybrid contribution 0.940 -0.221 -1.155 1.505 sum -1.341 0.628 23.851 23.897 Atomic orbital electron populations 1.21773 0.92215 1.02251 1.03242 1.20003 0.97299 0.96001 0.89791 1.21788 1.00839 0.93750 1.03252 1.24378 0.91680 0.86529 0.95715 1.70231 1.26728 1.28722 0.99724 1.19140 1.00837 0.95475 0.93834 1.19741 1.01904 0.99208 0.91018 1.19859 0.95421 0.94301 0.97080 1.18063 0.95961 0.96441 0.87085 1.21364 1.11737 1.31348 0.92198 0.93055 1.25907 0.99666 0.96694 0.96965 1.70083 1.39750 1.44308 1.02789 0.85446 0.79183 0.78886 0.77538 1.19178 1.20380 1.19532 1.20979 0.99491 0.99249 0.92875 1.20109 1.00589 0.97581 0.93658 1.18927 1.04418 1.00301 0.84925 1.45316 1.42874 1.24802 1.05284 1.22355 1.01462 0.98537 0.84798 0.88491 0.92925 0.93703 0.85990 0.88438 0.93037 0.93748 0.88191 0.96839 0.98336 0.92522 0.84577 0.82597 0.89199 0.88808 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.17 71.98 0.66 -1.57 16 2 C -0.01 -0.19 3.24 -11.54 -0.04 -0.23 16 3 C -0.14 -2.31 9.17 71.98 0.66 -1.65 16 4 C 0.28 8.00 6.37 137.93 0.88 8.88 16 5 N -0.53 -20.58 11.26 -179.96 -2.03 -22.60 16 6 C 0.02 1.04 7.23 39.45 0.29 1.33 16 7 C -0.10 -4.73 9.67 22.25 0.22 -4.51 16 8 C -0.06 -3.10 5.03 -20.12 -0.10 -3.21 16 9 C 0.06 3.47 5.08 29.10 0.15 3.62 16 10 C -0.53 -31.55 9.09 25.60 0.23 -31.31 16 11 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 12 C 0.01 0.34 5.46 84.66 0.46 0.80 16 13 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 14 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 18 C -0.11 -4.27 9.67 22.31 0.22 -4.05 16 19 C -0.10 -3.26 10.05 22.32 0.22 -3.03 16 20 C 0.02 0.80 6.87 38.86 0.27 1.06 16 21 N -0.49 -12.94 3.21 -528.84 -1.70 -14.63 16 22 C 0.07 0.89 10.81 127.77 1.38 2.27 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.12 1.16 6.66 -2.39 -0.02 1.15 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 31 H 0.01 0.77 8.08 -2.39 -0.02 0.76 16 32 H 0.00 -0.10 8.07 -2.39 -0.02 -0.12 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 35 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.79 7.01 -2.39 -0.02 0.77 16 Total: -1.00 -77.25 320.71 5.11 -72.14 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.03 Total: 6.08 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 5.49 Total: -31.60 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.44 Total: -94.35 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.25 5.11 -72.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.254 kcal (2) G-P(sol) polarization free energy of solvation -77.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds