Wall clock time and date at job start Mon Mar 30 2020 07:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30106 * 124.95107 * 269.69724 * 4 3 2 6 6 C 1.35791 * 109.64355 * 179.88917 * 5 4 3 7 7 C 1.39739 * 133.60293 * 180.10618 * 6 5 4 8 8 C 1.36595 * 119.88706 * 180.28061 * 7 6 5 9 9 C 1.50702 * 119.66297 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47055 * 90.00471 * 9 8 7 11 11 H 1.07998 * 119.99735 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00275 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99623 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00407 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47167 * 89.99816 * 14 12 10 16 16 H 1.48494 * 109.47068 * 210.00293 * 14 12 10 17 17 H 1.48500 * 109.46711 * 330.00092 * 14 12 10 18 18 C 1.38776 * 120.66901 * 0.02562 * 8 7 6 19 19 C 1.37845 * 120.45172 * 359.97438 * 18 8 7 20 20 C 1.38833 * 119.68977 * 0.04043 * 19 18 8 21 21 N 1.36042 * 124.95123 * 89.99767 * 4 3 2 22 22 C 1.46504 * 126.34680 * 359.94749 * 21 4 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08008 * 120.05089 * 0.26359 * 7 6 5 31 31 H 1.09007 * 109.46871 * 210.00091 * 9 8 7 32 32 H 1.09000 * 109.47583 * 330.00273 * 9 8 7 33 33 H 0.96995 * 119.99528 * 180.02562 * 13 12 10 34 34 H 1.08003 * 119.77075 * 180.02562 * 18 8 7 35 35 H 1.08003 * 120.15710 * 180.02562 * 19 18 8 36 36 H 1.09000 * 109.47364 * 89.99463 * 22 21 4 37 37 H 1.08996 * 109.47101 * 209.99864 * 22 21 4 38 38 H 1.09006 * 109.46868 * 330.00111 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2927 1.4481 1.0654 6 6 5.6023 1.4439 0.7064 7 6 6.7993 1.4447 1.4275 8 6 7.9934 1.4452 0.7643 9 6 9.2813 1.4455 1.5470 10 6 9.7110 0.0247 1.8076 11 1 9.1118 -0.7962 1.4426 12 6 10.8698 -0.2270 2.5111 13 7 11.6003 0.7728 2.9543 14 14 11.4029 -1.9881 2.8335 15 1 12.2709 -2.4538 1.7223 16 1 12.1576 -2.0508 4.1109 17 1 10.2038 -2.8595 2.9237 18 6 8.0327 1.4454 -0.6229 19 6 6.8647 1.4446 -1.3549 20 6 5.6416 1.4444 -0.6980 21 7 4.3258 1.4428 -1.1160 22 6 3.8555 1.4418 -2.5035 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 6.7802 1.4453 2.5074 31 1 10.0538 1.9597 0.9752 32 1 9.1294 1.9591 2.4963 33 1 12.4157 0.5957 3.4489 34 1 8.9850 1.4453 -1.1324 35 1 6.9008 1.4443 -2.4343 36 1 3.7379 2.4692 -2.8480 37 1 4.5821 0.9283 -3.1331 38 1 2.8963 0.9271 -2.5616 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082600446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:25 Heat of formation + Delta-G solvation = 47.676731 kcal Electronic energy + Delta-G solvation = -18370.570806 eV Core-core repulsion = 15598.732215 eV Total energy + Delta-G solvation = -2771.838591 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77660 -37.40265 -35.05273 -33.94746 -33.04265 -30.81826 -29.57961 -28.00101 -26.96204 -25.84879 -23.08481 -22.32416 -21.27297 -20.40130 -19.65291 -16.71072 -16.57642 -16.21995 -15.65473 -15.14678 -14.87172 -14.31445 -13.91294 -13.59071 -13.49043 -13.18211 -13.02709 -12.66456 -12.40109 -12.31238 -11.77364 -11.64549 -11.45670 -11.26332 -11.01042 -10.90375 -10.67932 -10.54232 -10.44488 -9.97070 -9.63689 -9.40785 -9.29554 -8.37364 -7.60083 -7.39926 -5.99057 -4.02477 1.49133 2.20592 2.83109 3.14801 3.34086 3.40250 3.45397 4.25383 4.43236 4.60218 4.62515 4.69756 4.81088 4.88613 5.04748 5.12098 5.24401 5.28717 5.35714 5.44324 5.49769 5.54765 5.73418 5.80440 5.90010 5.98408 6.05561 6.10320 6.18986 6.48934 6.75967 6.99030 7.14892 7.20352 7.46068 7.53484 7.67069 7.89724 7.97164 8.30921 8.38289 9.02795 9.61041 11.10668 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.004297 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.295477 B = 6515.293805 C = 6922.373793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.037 4.037 4 C 0.264 3.736 5 N -0.491 5.491 6 C 0.048 3.952 7 C -0.074 4.074 8 C -0.045 4.045 9 C 0.052 3.948 10 C -0.510 4.510 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.088 4.088 19 C -0.126 4.126 20 C 0.029 3.971 21 N -0.497 5.497 22 C 0.083 3.917 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.133 1.450 -11.141 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.076 4.076 4 C -0.002 4.002 5 N -0.211 5.211 6 C -0.069 4.069 7 C -0.094 4.094 8 C -0.048 4.048 9 C 0.015 3.985 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.107 4.107 19 C -0.147 4.147 20 C -0.078 4.078 21 N -0.190 5.190 22 C -0.060 4.060 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.142 0.858 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.269 1.502 -10.331 21.915 hybrid contribution 0.701 -0.998 -0.765 1.439 sum -18.568 0.504 -11.097 21.637 Atomic orbital electron populations 1.21761 0.95092 1.01964 1.01953 1.21504 0.95931 0.95382 1.03021 1.20144 0.84780 0.98589 1.04125 1.23365 0.94986 1.00759 0.81051 1.70311 1.01438 1.22105 1.27261 1.19044 0.91566 1.05940 0.90380 1.19933 0.88393 1.01294 0.99760 1.20173 0.96684 0.94333 0.93562 1.18325 0.87842 0.97706 0.94647 1.21090 1.07367 0.91596 1.34790 0.92476 1.25005 0.96491 0.97162 0.95680 1.69961 1.15157 1.30628 1.37643 0.86549 0.78695 0.84935 0.77619 1.20650 1.21177 1.19819 1.20941 0.96741 0.98979 0.94034 1.19809 0.89222 1.07153 0.98476 1.18770 0.84756 1.08926 0.95304 1.44925 1.04868 1.62457 1.06747 1.21838 1.01118 1.02803 0.80214 0.92739 0.92441 0.92305 0.90854 0.92132 0.90338 0.88472 0.85755 0.95207 0.95192 0.92893 0.85482 0.87083 0.91337 0.90073 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 3 C -0.04 -0.37 5.28 -27.89 -0.15 -0.52 16 4 C 0.26 3.98 7.11 -154.82 -1.10 2.88 16 5 N -0.49 -9.46 11.27 -8.23 -0.09 -9.55 16 6 C 0.05 0.99 7.23 -84.70 -0.61 0.38 16 7 C -0.07 -1.65 9.66 -39.61 -0.38 -2.03 16 8 C -0.05 -1.02 5.03 -105.02 -0.53 -1.55 16 9 C 0.05 1.35 5.08 -29.03 -0.15 1.20 16 10 C -0.51 -14.53 9.09 -34.44 -0.31 -14.84 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.09 -1.73 9.67 -39.53 -0.38 -2.11 16 19 C -0.13 -2.18 10.05 -39.51 -0.40 -2.58 16 20 C 0.03 0.53 6.87 -83.99 -0.58 -0.05 16 21 N -0.50 -7.26 3.21 -118.50 -0.38 -7.64 16 22 C 0.08 0.75 10.76 59.85 0.64 1.40 16 23 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 2.77 8.06 -52.48 -0.42 2.35 16 31 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.13 2.34 8.06 -52.48 -0.42 1.91 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.54 7.62 -51.93 -0.40 0.15 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -33.19 322.54 -9.55 -42.74 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.82 Total: -3.16 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.83 Total: -18.14 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.26 Total: -43.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.19 -9.55 -42.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.420 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds