Wall clock time and date at job start Mon Mar 30 2020 07:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30106 * 124.95107 * 269.69724 * 4 3 2 6 6 C 1.35791 * 109.64355 * 179.88917 * 5 4 3 7 7 C 1.39739 * 133.60293 * 180.10618 * 6 5 4 8 8 C 1.36595 * 119.88706 * 180.28061 * 7 6 5 9 9 C 1.50702 * 119.66297 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47055 * 90.00471 * 9 8 7 11 11 H 1.07998 * 119.99735 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00275 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99623 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00407 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47167 * 89.99816 * 14 12 10 16 16 H 1.48494 * 109.47068 * 210.00293 * 14 12 10 17 17 H 1.48500 * 109.46711 * 330.00092 * 14 12 10 18 18 C 1.38776 * 120.66901 * 0.02562 * 8 7 6 19 19 C 1.37845 * 120.45172 * 359.97438 * 18 8 7 20 20 C 1.38833 * 119.68977 * 0.04043 * 19 18 8 21 21 N 1.36042 * 124.95123 * 89.99767 * 4 3 2 22 22 C 1.46504 * 126.34680 * 359.94749 * 21 4 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08008 * 120.05089 * 0.26359 * 7 6 5 31 31 H 1.09007 * 109.46871 * 210.00091 * 9 8 7 32 32 H 1.09000 * 109.47583 * 330.00273 * 9 8 7 33 33 H 0.96995 * 119.99528 * 180.02562 * 13 12 10 34 34 H 1.08003 * 119.77075 * 180.02562 * 18 8 7 35 35 H 1.08003 * 120.15710 * 180.02562 * 19 18 8 36 36 H 1.09000 * 109.47364 * 89.99463 * 22 21 4 37 37 H 1.08996 * 109.47101 * 209.99864 * 22 21 4 38 38 H 1.09006 * 109.46868 * 330.00111 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2927 1.4481 1.0654 6 6 5.6023 1.4439 0.7064 7 6 6.7993 1.4447 1.4275 8 6 7.9934 1.4452 0.7643 9 6 9.2813 1.4455 1.5470 10 6 9.7110 0.0247 1.8076 11 1 9.1118 -0.7962 1.4426 12 6 10.8698 -0.2270 2.5111 13 7 11.6003 0.7728 2.9543 14 14 11.4029 -1.9881 2.8335 15 1 12.2709 -2.4538 1.7223 16 1 12.1576 -2.0508 4.1109 17 1 10.2038 -2.8595 2.9237 18 6 8.0327 1.4454 -0.6229 19 6 6.8647 1.4446 -1.3549 20 6 5.6416 1.4444 -0.6980 21 7 4.3258 1.4428 -1.1160 22 6 3.8555 1.4418 -2.5035 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 6.7802 1.4453 2.5074 31 1 10.0538 1.9597 0.9752 32 1 9.1294 1.9591 2.4963 33 1 12.4157 0.5957 3.4489 34 1 8.9850 1.4453 -1.1324 35 1 6.9008 1.4443 -2.4343 36 1 3.7379 2.4692 -2.8480 37 1 4.5821 0.9283 -3.1331 38 1 2.8963 0.9271 -2.5616 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082600446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:24 Heat of formation + Delta-G solvation = 28.971983 kcal Electronic energy + Delta-G solvation = -18371.381904 eV Core-core repulsion = 15598.732215 eV Total energy + Delta-G solvation = -2772.649690 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.09385 -38.90915 -35.96292 -35.15429 -35.03818 -32.51907 -30.84904 -29.46956 -27.96947 -27.32155 -24.94415 -23.42993 -22.38881 -21.97591 -20.80568 -18.51471 -18.04956 -17.78390 -16.78736 -16.63568 -16.09582 -15.73367 -15.12994 -14.88637 -14.62370 -14.50783 -14.25302 -13.92797 -13.60721 -13.31302 -13.28552 -13.02517 -12.69887 -12.55670 -12.51328 -12.34842 -12.29246 -11.95256 -11.61960 -11.56757 -11.45298 -11.13221 -10.86462 -10.59545 -9.08205 -8.92933 -8.18516 -6.32383 0.06881 0.64801 1.39126 1.40969 1.52488 1.72574 1.83293 2.40417 2.98492 3.10685 3.18595 3.55939 3.89922 4.05147 4.09437 4.12183 4.21380 4.38208 4.45331 4.56790 4.59620 4.65102 4.68122 4.74168 4.78451 4.91873 4.96416 5.20832 5.25268 5.28744 5.30869 5.35585 5.45934 5.50722 5.59030 5.75431 5.99889 6.05151 6.21185 6.31661 6.79340 6.98035 7.35684 8.90123 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.004297 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.295477 B = 6515.293805 C = 6922.373793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.035 4.035 4 C 0.282 3.718 5 N -0.543 5.543 6 C 0.024 3.976 7 C -0.100 4.100 8 C -0.063 4.063 9 C 0.062 3.938 10 C -0.529 4.529 11 H 0.051 0.949 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.271 1.271 18 C -0.106 4.106 19 C -0.098 4.098 20 C 0.023 3.977 21 N -0.490 5.490 22 C 0.069 3.931 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.014 0.986 32 H -0.002 1.002 33 H 0.266 0.734 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.671 0.524 -14.233 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.074 4.074 4 C 0.016 3.984 5 N -0.264 5.264 6 C -0.093 4.093 7 C -0.120 4.120 8 C -0.065 4.065 9 C 0.025 3.975 10 C -0.567 4.567 11 H 0.070 0.930 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.195 1.195 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.085 4.085 21 N -0.181 5.181 22 C -0.071 4.071 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.032 0.968 32 H 0.017 0.983 33 H 0.075 0.925 34 H 0.155 0.845 35 H 0.175 0.825 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.834 0.581 -13.467 25.659 hybrid contribution 1.292 -0.658 0.141 1.457 sum -20.542 -0.077 -13.326 24.486 Atomic orbital electron populations 1.21724 0.92921 1.02573 1.02998 1.21459 0.97678 0.94255 1.02015 1.20445 0.81026 0.99779 1.06166 1.24360 0.96834 0.96905 0.80321 1.70291 1.01123 1.25142 1.29815 1.19135 0.91776 1.06417 0.91999 1.19755 0.89687 1.03730 0.98842 1.19853 0.94881 0.96860 0.94942 1.18064 0.89572 0.96383 0.93515 1.21367 1.07712 0.92401 1.35181 0.93037 1.25920 0.96391 1.01839 0.95176 1.70082 1.15648 1.32997 1.38197 0.85436 0.78343 0.79227 0.77990 1.19177 1.20385 1.19532 1.20984 0.98454 1.00466 0.92662 1.20113 0.87721 1.03667 1.00387 1.18927 0.86787 1.08456 0.94328 1.45282 1.03128 1.60713 1.08944 1.22358 1.02878 1.05010 0.76834 0.90694 0.92117 0.92274 0.93633 0.91494 0.86397 0.88314 0.88174 0.96817 0.98340 0.92518 0.84526 0.82514 0.89097 0.88850 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 3 C -0.04 -0.59 5.28 29.85 0.16 -0.43 16 4 C 0.28 7.92 7.11 137.92 0.98 8.90 16 5 N -0.54 -21.16 11.27 -179.97 -2.03 -23.19 16 6 C 0.02 1.02 7.23 39.45 0.29 1.31 16 7 C -0.10 -4.80 9.66 22.25 0.22 -4.59 16 8 C -0.06 -3.04 5.03 -20.12 -0.10 -3.14 16 9 C 0.06 3.47 5.08 29.10 0.15 3.62 16 10 C -0.53 -31.54 9.09 25.60 0.23 -31.31 16 11 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 12 C 0.00 0.29 5.46 84.65 0.46 0.75 16 13 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 14 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 18 C -0.11 -4.24 9.67 22.31 0.22 -4.02 16 19 C -0.10 -3.22 10.05 22.32 0.22 -3.00 16 20 C 0.02 0.82 6.87 38.86 0.27 1.09 16 21 N -0.49 -12.71 3.21 -528.83 -1.70 -14.40 16 22 C 0.07 0.88 10.76 127.77 1.37 2.25 16 23 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.12 1.09 7.65 -2.39 -0.02 1.07 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 31 H 0.01 0.79 8.08 -2.38 -0.02 0.77 16 32 H 0.00 -0.11 8.07 -2.39 -0.02 -0.12 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.14 5.06 8.06 -2.91 -0.02 5.03 16 35 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 0.78 7.62 -2.38 -0.02 0.76 16 Total: -1.00 -77.31 322.54 4.97 -72.34 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.03 Total: 5.45 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 5.36 Total: -30.83 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -3.44 Total: -94.69 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.31 4.97 -72.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.308 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds