Wall clock time and date at job start Mon Mar 30 2020 07:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47156 * 2 1 4 4 C 1.36032 * 126.34995 * 269.98990 * 3 2 1 5 5 C 1.50704 * 124.94911 * 0.04855 * 4 3 2 6 6 N 1.30113 * 110.10039 * 180.02562 * 4 3 2 7 7 C 1.35779 * 109.64526 * 0.02562 * 6 4 3 8 8 C 1.39743 * 133.60542 * 180.31896 * 7 6 4 9 9 C 1.36599 * 119.88502 * 180.14572 * 8 7 6 10 10 C 1.50697 * 119.66440 * 179.76892 * 9 8 7 11 11 C 1.52997 * 109.47466 * 269.72613 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.38784 * 120.67149 * 359.49178 * 9 8 7 21 21 C 1.37852 * 120.44835 * 0.26194 * 20 9 8 22 22 C 1.38053 * 126.34980 * 90.00211 * 3 2 1 23 23 H 1.08997 * 109.47494 * 300.00761 * 1 2 3 24 24 H 1.09008 * 109.46617 * 60.00154 * 1 2 3 25 25 H 1.08999 * 109.47544 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46875 * 239.99673 * 2 1 3 27 27 H 1.09003 * 109.47015 * 120.00030 * 2 1 3 28 28 H 1.09003 * 109.46828 * 269.97724 * 5 4 3 29 29 H 1.08997 * 109.47553 * 29.97552 * 5 4 3 30 30 H 1.09000 * 109.47088 * 149.98161 * 5 4 3 31 31 H 1.07996 * 120.05631 * 359.91659 * 8 7 6 32 32 H 1.09002 * 109.47120 * 149.72366 * 10 9 8 33 33 H 1.08998 * 109.46862 * 29.73168 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99773 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99964 * 11 10 9 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.07996 * 119.77520 * 180.27491 * 20 9 8 38 38 H 1.07997 * 120.15280 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2873 2.1413 -1.0956 5 6 2.1254 1.6860 -2.5231 6 7 2.7041 3.3188 -0.7315 7 6 2.7316 3.3944 0.6239 8 6 3.0827 4.4022 1.5260 9 6 3.0062 4.1696 2.8699 10 6 3.3911 5.2582 3.8383 11 6 4.8812 5.1457 4.1663 12 6 5.2661 6.2347 5.1343 13 1 4.5222 6.9366 5.4812 14 6 6.5678 6.3344 5.5779 15 7 7.4736 5.4794 5.1558 16 14 7.0447 7.6838 6.7782 17 1 5.8511 8.5081 7.0962 18 1 7.5708 7.0734 8.0257 19 1 8.0913 8.5423 6.1676 20 6 2.5723 2.9428 3.3525 21 6 2.2160 1.9358 2.4812 22 6 2.2911 2.1526 1.1119 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.0553 1.2334 -2.8677 29 1 1.3210 0.9529 -2.5817 30 1 1.8832 2.5424 -3.1524 31 1 3.4174 5.3621 1.1614 32 1 2.8086 5.1528 4.7536 33 1 3.1901 6.2311 3.3899 34 1 5.4637 5.2511 3.2511 35 1 5.0821 4.1728 4.6148 36 1 8.3894 5.5498 5.4676 37 1 2.5132 2.7761 4.4179 38 1 1.8786 0.9832 2.8619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082600451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:37 Heat of formation + Delta-G solvation = 48.593533 kcal Electronic energy + Delta-G solvation = -18345.647770 eV Core-core repulsion = 15573.848935 eV Total energy + Delta-G solvation = -2771.798835 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.97462 -37.69932 -35.02882 -33.71476 -32.06179 -30.90049 -30.42886 -28.84016 -27.25572 -24.79944 -23.78189 -21.90937 -21.73699 -20.08583 -19.72418 -17.02927 -16.75828 -16.16139 -15.64278 -14.89163 -14.60465 -14.41963 -13.90929 -13.59667 -13.42834 -13.13004 -12.91543 -12.86758 -12.45275 -12.35788 -12.26870 -11.71158 -11.57639 -11.34150 -11.15261 -10.88853 -10.59705 -10.47109 -10.15352 -9.79936 -9.65946 -9.44035 -9.01864 -8.29892 -7.80121 -7.64304 -5.94284 -3.97017 1.27887 1.92388 2.64477 2.97114 3.34932 3.42225 3.46527 4.23544 4.26945 4.37460 4.51152 4.56538 4.69626 4.90261 5.07221 5.17286 5.28060 5.28826 5.36700 5.41298 5.45445 5.54746 5.72925 5.76468 5.87686 5.88928 6.12631 6.39571 6.52213 6.73390 6.75241 6.87833 7.06595 7.20578 7.29185 7.36726 7.75424 7.90155 8.06678 8.12987 8.47014 9.10569 9.66739 11.16810 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.040649 B = 0.003841 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.654565 B = 7288.782884 C = 7562.449452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.493 5.493 4 C 0.266 3.734 5 C -0.073 4.073 6 N -0.494 5.494 7 C 0.050 3.950 8 C -0.069 4.069 9 C -0.066 4.066 10 C -0.075 4.075 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.090 4.090 21 C -0.118 4.118 22 C 0.036 3.964 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.259 0.741 37 H 0.129 0.871 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 -13.099 -12.216 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.185 5.185 4 C 0.001 3.999 5 C -0.132 4.132 6 N -0.214 5.214 7 C -0.067 4.067 8 C -0.088 4.088 9 C -0.068 4.068 10 C -0.113 4.113 11 C -0.009 4.009 12 C -0.558 4.558 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.071 4.071 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.147 0.853 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.840 -12.605 -12.724 22.634 hybrid contribution 0.233 -0.104 1.219 1.246 sum -13.607 -12.709 -11.504 21.886 Atomic orbital electron populations 1.22184 0.94548 1.02826 1.03261 1.21682 0.95277 0.80208 1.04242 1.45184 1.55620 1.12578 1.05142 1.23476 0.98364 0.87271 0.90771 1.20304 1.02982 1.02573 0.87297 1.70346 1.21744 1.17817 1.11484 1.18985 1.04264 0.93792 0.89704 1.19911 1.00034 0.97878 0.91026 1.19841 0.96874 0.96202 0.93932 1.20798 1.00674 0.94273 0.95547 1.19095 0.87924 0.97182 0.96693 1.21311 0.94478 1.13861 1.26193 0.92518 1.25027 0.96690 0.96120 0.96635 1.69989 1.02541 1.36404 1.44448 0.86551 0.78510 0.82057 0.80972 1.19705 1.21083 1.21045 1.20888 0.98392 0.92381 0.99307 1.19817 1.05575 0.99841 0.88703 1.18796 1.06139 0.92938 0.89202 0.91756 0.91969 0.90723 0.89196 0.89345 0.89769 0.90682 0.88847 0.85535 0.92151 0.92158 0.96362 0.96438 0.93106 0.85309 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.11 0.89 6.45 -4.04 -0.03 0.86 16 3 N -0.49 -6.45 2.80 -111.16 -0.31 -6.76 16 4 C 0.27 3.66 7.85 -154.82 -1.22 2.44 16 5 C -0.07 -0.60 9.95 36.01 0.36 -0.24 16 6 N -0.49 -8.81 11.27 -8.23 -0.09 -8.90 16 7 C 0.05 0.94 7.23 -84.70 -0.61 0.33 16 8 C -0.07 -1.35 9.66 -39.61 -0.38 -1.74 16 9 C -0.07 -1.29 5.10 -105.01 -0.54 -1.82 16 10 C -0.08 -1.61 5.26 -27.89 -0.15 -1.76 16 11 C 0.03 0.75 4.95 -27.88 -0.14 0.61 16 12 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 C -0.09 -1.55 9.67 -39.52 -0.38 -1.93 16 21 C -0.12 -1.83 10.05 -39.50 -0.40 -2.23 16 22 C 0.04 0.60 6.87 -83.99 -0.58 0.02 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.52 7.62 -51.93 -0.40 0.13 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.06 1.25 8.07 -51.93 -0.42 0.84 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -34.39 322.86 -9.73 -44.12 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.82 Total: -3.56 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -4.09 Total: -19.95 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.33 Total: -42.40 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.39 -9.73 -44.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.713 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds