Wall clock time and date at job start Mon Mar 30 2020 07:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47156 * 2 1 4 4 C 1.36032 * 126.34995 * 269.98990 * 3 2 1 5 5 C 1.50704 * 124.94911 * 0.04855 * 4 3 2 6 6 N 1.30113 * 110.10039 * 180.02562 * 4 3 2 7 7 C 1.35779 * 109.64526 * 0.02562 * 6 4 3 8 8 C 1.39743 * 133.60542 * 180.31896 * 7 6 4 9 9 C 1.36599 * 119.88502 * 180.14572 * 8 7 6 10 10 C 1.50697 * 119.66440 * 179.76892 * 9 8 7 11 11 C 1.52997 * 109.47466 * 269.72613 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.38784 * 120.67149 * 359.49178 * 9 8 7 21 21 C 1.37852 * 120.44835 * 0.26194 * 20 9 8 22 22 C 1.38053 * 126.34980 * 90.00211 * 3 2 1 23 23 H 1.08997 * 109.47494 * 300.00761 * 1 2 3 24 24 H 1.09008 * 109.46617 * 60.00154 * 1 2 3 25 25 H 1.08999 * 109.47544 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46875 * 239.99673 * 2 1 3 27 27 H 1.09003 * 109.47015 * 120.00030 * 2 1 3 28 28 H 1.09003 * 109.46828 * 269.97724 * 5 4 3 29 29 H 1.08997 * 109.47553 * 29.97552 * 5 4 3 30 30 H 1.09000 * 109.47088 * 149.98161 * 5 4 3 31 31 H 1.07996 * 120.05631 * 359.91659 * 8 7 6 32 32 H 1.09002 * 109.47120 * 149.72366 * 10 9 8 33 33 H 1.08998 * 109.46862 * 29.73168 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99773 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99964 * 11 10 9 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.07996 * 119.77520 * 180.27491 * 20 9 8 38 38 H 1.07997 * 120.15280 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2873 2.1413 -1.0956 5 6 2.1254 1.6860 -2.5231 6 7 2.7041 3.3188 -0.7315 7 6 2.7316 3.3944 0.6239 8 6 3.0827 4.4022 1.5260 9 6 3.0062 4.1696 2.8699 10 6 3.3911 5.2582 3.8383 11 6 4.8812 5.1457 4.1663 12 6 5.2661 6.2347 5.1343 13 1 4.5222 6.9366 5.4812 14 6 6.5678 6.3344 5.5779 15 7 7.4736 5.4794 5.1558 16 14 7.0447 7.6838 6.7782 17 1 5.8511 8.5081 7.0962 18 1 7.5708 7.0734 8.0257 19 1 8.0913 8.5423 6.1676 20 6 2.5723 2.9428 3.3525 21 6 2.2160 1.9358 2.4812 22 6 2.2911 2.1526 1.1119 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.0553 1.2334 -2.8677 29 1 1.3210 0.9529 -2.5817 30 1 1.8832 2.5424 -3.1524 31 1 3.4174 5.3621 1.1614 32 1 2.8086 5.1528 4.7536 33 1 3.1901 6.2311 3.3899 34 1 5.4637 5.2511 3.2511 35 1 5.0821 4.1728 4.6148 36 1 8.3894 5.5498 5.4676 37 1 2.5132 2.7761 4.4179 38 1 1.8786 0.9832 2.8619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082600451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:34 Heat of formation + Delta-G solvation = 29.136963 kcal Electronic energy + Delta-G solvation = -18346.491470 eV Core-core repulsion = 15573.848935 eV Total energy + Delta-G solvation = -2772.642535 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.13591 -39.05886 -35.99648 -35.62977 -33.76731 -31.90138 -31.67072 -30.16667 -28.66600 -26.52764 -24.67305 -23.46153 -23.14077 -21.64152 -20.77816 -18.59052 -18.10032 -17.75423 -16.70556 -16.50764 -16.20783 -15.40256 -15.20707 -14.84095 -14.48150 -14.37371 -14.01502 -13.97129 -13.88445 -13.55320 -13.33571 -13.08343 -12.90948 -12.83079 -12.48625 -12.25120 -12.18317 -12.09274 -11.72660 -11.51242 -11.24785 -11.12663 -10.88634 -10.55482 -9.10275 -8.98415 -8.18279 -6.30618 0.02282 0.55126 1.40885 1.41780 1.55458 1.67992 1.80848 2.42210 2.88659 3.14325 3.22838 3.53652 3.75017 4.04066 4.08307 4.12200 4.31868 4.35924 4.38067 4.49406 4.57655 4.68984 4.72797 4.79062 4.80099 4.89484 4.95971 5.02717 5.14272 5.22716 5.25874 5.45110 5.50606 5.56508 5.58313 5.85530 5.89319 5.97303 6.24387 6.29989 6.86587 6.94881 7.38736 8.93626 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.040649 B = 0.003841 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.654565 B = 7288.782884 C = 7562.449452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.486 5.486 4 C 0.279 3.721 5 C -0.072 4.072 6 N -0.546 5.546 7 C 0.022 3.978 8 C -0.095 4.095 9 C -0.082 4.082 10 C -0.060 4.060 11 C 0.036 3.964 12 C -0.542 4.542 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.280 1.280 20 C -0.106 4.106 21 C -0.101 4.101 22 C 0.028 3.972 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.058 0.942 34 H -0.018 1.018 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.144 0.856 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 -15.097 -12.628 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.177 5.177 4 C 0.013 3.987 5 C -0.130 4.130 6 N -0.268 5.268 7 C -0.095 4.095 8 C -0.115 4.115 9 C -0.084 4.084 10 C -0.098 4.098 11 C -0.001 4.001 12 C -0.580 4.580 13 H 0.083 0.917 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.183 1.183 18 H -0.202 1.202 19 H -0.206 1.206 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.081 4.081 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.000 1.000 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.162 0.838 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.388 -14.637 -13.145 24.977 hybrid contribution 0.666 0.383 1.182 1.409 sum -14.723 -14.254 -11.963 23.729 Atomic orbital electron populations 1.22158 0.93288 1.04429 1.02366 1.22177 0.96259 0.77488 1.06362 1.45553 1.54480 1.14013 1.03694 1.24536 0.95098 0.86110 0.92943 1.20594 1.05240 1.03635 0.83532 1.70324 1.24749 1.20672 1.11058 1.19179 1.04985 0.94752 0.90616 1.19870 1.01834 0.98034 0.91751 1.19684 0.98550 0.96814 0.93355 1.20527 0.97184 0.95300 0.96773 1.18924 0.91082 0.95565 0.94499 1.21749 0.95142 1.14487 1.26613 0.91727 1.26032 0.96597 0.98753 0.98608 1.70134 1.03060 1.38447 1.45922 0.85349 0.78447 0.78671 0.78265 1.18319 1.20175 1.20564 1.21051 0.99099 0.91948 1.00478 1.20136 1.03315 1.00602 0.88066 1.18999 1.05839 0.92755 0.90486 0.93661 0.91891 0.87821 0.85941 0.88495 0.87902 0.87130 0.88569 0.87293 0.90815 0.92375 0.99968 0.98741 0.92819 0.83819 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.24 71.98 0.74 -0.88 16 2 C 0.10 1.20 6.45 86.38 0.56 1.76 16 3 N -0.49 -11.63 2.80 -505.60 -1.42 -13.05 16 4 C 0.28 7.20 7.85 137.92 1.08 8.29 16 5 C -0.07 -0.95 9.95 71.24 0.71 -0.24 16 6 N -0.55 -19.86 11.27 -179.96 -2.03 -21.89 16 7 C 0.02 0.86 7.23 39.45 0.29 1.15 16 8 C -0.10 -4.02 9.66 22.25 0.22 -3.80 16 9 C -0.08 -3.35 5.10 -20.12 -0.10 -3.45 16 10 C -0.06 -2.71 5.26 29.85 0.16 -2.55 16 11 C 0.04 2.05 4.95 29.85 0.15 2.20 16 12 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 13 H 0.06 3.62 7.74 -2.91 -0.02 3.60 16 14 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 15 N -0.94 -59.09 13.29 21.45 0.28 -58.81 16 16 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 C -0.11 -3.67 9.67 22.31 0.22 -3.45 16 21 C -0.10 -2.98 10.05 22.32 0.22 -2.76 16 22 C 0.03 0.90 6.87 38.86 0.27 1.17 16 23 H 0.04 0.63 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.12 0.77 7.62 -2.39 -0.02 0.75 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 0.69 7.65 -2.39 -0.02 0.67 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 32 H 0.07 3.05 8.08 -2.39 -0.02 3.03 16 33 H 0.06 2.56 8.07 -2.39 -0.02 2.54 16 34 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 35 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -79.00 322.86 5.08 -73.92 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.03 Total: 6.37 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 5.19 Total: -34.04 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -3.16 Total: -93.75 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -79.00 5.08 -73.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082600451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.053 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds