Wall clock time and date at job start Mon Mar 30 2020 08:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99838 * 2 1 4 4 H 1.48509 * 109.47196 * 269.99930 * 3 2 1 5 5 H 1.48501 * 109.47450 * 29.99930 * 3 2 1 6 6 H 1.48506 * 109.47252 * 150.00319 * 3 2 1 7 7 C 1.37875 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00571 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99704 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46938 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46968 * 180.02562 * 10 9 7 12 12 C 1.39823 * 110.99873 * 185.18978 * 11 10 9 13 13 C 1.38966 * 120.08103 * 274.13698 * 12 11 10 14 14 Cl 1.73595 * 120.03986 * 359.70139 * 13 12 11 15 15 C 1.38220 * 119.91708 * 179.97438 * 13 12 11 16 16 C 1.38277 * 120.08477 * 0.02562 * 15 13 12 17 17 C 1.38278 * 120.16153 * 359.95935 * 16 15 13 18 18 C 1.38227 * 120.08056 * 0.04210 * 17 16 15 19 19 Cl 1.73599 * 120.03933 * 180.02562 * 18 17 16 20 20 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47243 * 60.00175 * 9 7 2 22 22 H 1.08997 * 109.47313 * 300.00123 * 9 7 2 23 23 H 1.08996 * 109.47293 * 60.00261 * 10 9 7 24 24 H 1.08996 * 109.47099 * 299.99543 * 10 9 7 25 25 H 1.00899 * 110.99892 * 61.23609 * 11 10 9 26 26 H 1.08001 * 119.95923 * 179.97438 * 15 13 12 27 27 H 1.07996 * 119.92313 * 180.02562 * 16 15 13 28 28 H 1.08004 * 119.96190 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 7 5.4905 -2.6365 0.0001 12 6 5.9916 -3.9366 -0.1178 13 6 6.1602 -4.7235 1.0150 14 17 5.7561 -4.0912 2.5804 15 6 6.6553 -6.0084 0.8945 16 6 6.9832 -6.5108 -0.3514 17 6 6.8165 -5.7308 -1.4809 18 6 6.3220 -4.4449 -1.3681 19 17 6.1125 -3.4668 -2.7870 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6796 0.8895 22 1 3.8745 -0.6808 -0.8905 23 1 3.6579 -3.1506 -0.8896 24 1 3.6586 -3.1501 0.8903 25 1 5.8521 -2.1832 0.8259 26 1 6.7869 -6.6204 1.7745 27 1 7.3694 -7.5152 -0.4426 28 1 7.0733 -6.1266 -2.4525 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083848419.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:27 Heat of formation + Delta-G solvation = -12.811404 kcal Electronic energy + Delta-G solvation = -14583.149002 eV Core-core repulsion = 11877.578913 eV Total energy + Delta-G solvation = -2705.570089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77962 -37.73084 -37.32226 -37.15867 -35.02683 -32.52340 -31.61174 -29.59688 -26.15920 -23.85210 -22.95545 -22.32932 -19.09156 -18.49435 -17.65397 -16.91614 -16.24769 -16.02930 -15.40783 -15.32993 -15.11469 -14.70182 -14.33443 -13.45799 -13.34845 -13.31578 -13.00077 -12.75511 -12.23867 -12.09809 -12.05742 -11.92798 -11.78828 -11.64676 -11.44678 -10.78132 -10.22660 -9.73541 -9.34178 -8.30470 -6.34951 -0.02637 0.03805 0.88542 1.36177 1.36919 1.37476 1.50309 2.35830 2.41410 3.00475 3.05214 3.84015 3.95126 4.22254 4.25705 4.36764 4.42623 4.46790 4.87687 4.99536 5.05813 5.22113 5.22766 5.41468 5.55368 5.62033 5.95268 6.21917 6.32205 6.71843 7.29523 8.86090 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.006333 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.178191 B = 4420.394904 C = 5190.671675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.032 0.968 9 C 0.000 4.000 10 C 0.101 3.899 11 N -0.645 5.645 12 C 0.097 3.903 13 C -0.082 4.082 14 Cl -0.064 7.064 15 C -0.095 4.095 16 C -0.094 4.094 17 C -0.097 4.097 18 C -0.035 4.035 19 Cl -0.058 7.058 20 H 0.267 0.733 21 H 0.021 0.979 22 H 0.022 0.978 23 H 0.055 0.945 24 H 0.027 0.973 25 H 0.356 0.644 26 H 0.162 0.838 27 H 0.182 0.818 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.733 -13.539 0.106 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.051 0.949 9 C -0.038 4.038 10 C -0.025 4.025 11 N -0.274 5.274 12 C -0.002 4.002 13 C -0.112 4.112 14 Cl -0.035 7.035 15 C -0.114 4.114 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.063 4.063 19 Cl -0.029 7.029 20 H 0.076 0.924 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.178 0.822 26 H 0.179 0.821 27 H 0.200 0.800 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 18.549 -13.099 -0.539 22.714 hybrid contribution -0.618 0.841 0.903 1.380 sum 17.930 -12.257 0.364 21.723 Atomic orbital electron populations 1.70056 1.08217 1.28204 1.52447 1.25937 0.95588 1.03356 0.93972 0.85652 0.79505 0.78270 0.79176 1.19356 1.20853 1.17017 1.21308 0.91595 0.93238 1.50757 0.94935 1.19396 0.93727 0.93723 0.96946 1.21629 0.83281 0.98198 0.99399 1.57924 1.08902 1.13782 1.46821 1.18582 0.99558 0.90530 0.91509 1.21816 1.06673 0.96302 0.86361 1.98386 1.92531 1.87080 1.25519 1.21438 0.97004 0.92395 1.00551 1.21500 0.98555 1.01485 0.89709 1.21498 0.97501 0.90590 1.01960 1.20991 1.04223 0.94171 0.86926 1.98379 1.95804 1.71342 1.37422 0.92414 0.96039 0.95914 0.92618 0.95436 0.82217 0.82090 0.80047 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 15 2 C 0.01 0.51 5.47 84.65 0.46 0.97 15 3 Si 0.95 45.41 27.47 68.60 1.88 47.29 15 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.45 15 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 15 7 C -0.53 -31.31 9.66 25.60 0.25 -31.06 15 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 15 9 C 0.00 0.00 4.34 29.85 0.13 0.13 15 10 C 0.10 4.20 5.50 86.30 0.47 4.68 15 11 N -0.65 -22.29 5.61 -338.33 -1.90 -24.19 15 12 C 0.10 2.87 5.26 38.21 0.20 3.07 15 13 C -0.08 -2.08 6.33 22.44 0.14 -1.94 15 14 Cl -0.06 -1.69 27.23 -2.72 -0.07 -1.77 15 15 C -0.09 -1.70 9.82 22.27 0.22 -1.48 15 16 C -0.09 -1.34 10.04 22.29 0.22 -1.11 15 17 C -0.10 -1.77 9.82 22.28 0.22 -1.55 15 18 C -0.03 -0.92 6.34 22.44 0.14 -0.78 15 19 Cl -0.06 -1.70 28.44 -2.72 -0.08 -1.78 15 20 H 0.27 15.80 8.31 -92.71 -0.77 15.03 15 21 H 0.02 1.01 7.20 -2.39 -0.02 0.99 15 22 H 0.02 1.10 7.57 -2.39 -0.02 1.08 15 23 H 0.06 2.44 8.11 -2.39 -0.02 2.42 15 24 H 0.03 1.16 7.71 -2.39 -0.02 1.14 15 25 H 0.36 11.71 7.70 -89.69 -0.69 11.02 15 26 H 0.16 2.05 8.06 -2.91 -0.02 2.03 15 27 H 0.18 1.05 8.06 -2.91 -0.02 1.03 15 28 H 0.16 2.12 8.06 -2.91 -0.02 2.09 15 Total: -1.00 -68.18 274.81 3.03 -65.15 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.44 Total: 4.41 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 2.46 Total: -29.08 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.60 Total: -84.22 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.15 Total: -3.55 kcal Total: -68.18 3.03 -65.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083848419.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.339 kcal (2) G-P(sol) polarization free energy of solvation -68.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds