Wall clock time and date at job start Mon Mar 30 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99723 * 2 1 4 4 C 1.50707 * 109.46677 * 180.02562 * 3 2 1 5 5 C 1.34244 * 126.50310 * 260.01975 * 4 3 2 6 6 N 1.36825 * 109.93235 * 180.02562 * 5 4 3 7 7 C 1.46493 * 125.06108 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47400 * 265.02472 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.37689 * 109.87500 * 0.26588 * 6 5 4 18 18 C 1.39120 * 133.50582 * 180.45887 * 17 6 5 19 19 C 1.37746 * 119.78203 * 179.55292 * 18 17 6 20 20 C 1.38833 * 120.66365 * 359.75268 * 19 18 17 21 21 C 1.36624 * 120.52888 * 359.97438 * 20 19 18 22 22 C 1.39629 * 119.76554 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.47393 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47207 * 300.00031 * 1 2 3 25 25 H 1.09001 * 109.47168 * 60.00054 * 1 2 3 26 26 H 1.00901 * 110.99872 * 123.94813 * 2 1 3 27 27 H 1.08998 * 109.47707 * 60.00457 * 3 2 1 28 28 H 1.08999 * 109.47544 * 299.99669 * 3 2 1 29 29 H 1.08008 * 125.03060 * 0.02562 * 5 4 3 30 30 H 1.09004 * 109.46794 * 145.02571 * 7 6 5 31 31 H 1.09000 * 109.47559 * 25.03047 * 7 6 5 32 32 H 1.09004 * 109.47066 * 60.00265 * 8 7 6 33 33 H 1.08994 * 109.47405 * 300.00096 * 8 7 6 34 34 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 35 35 H 1.07997 * 120.10847 * 359.28264 * 18 17 6 36 36 H 1.08001 * 119.66911 * 179.73890 * 19 18 17 37 37 H 1.08004 * 119.73444 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.11575 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.3056 1.4966 1.0618 6 7 5.6146 1.3946 0.6768 7 6 6.7674 1.5220 1.5718 8 6 7.2829 2.9621 1.5377 9 6 8.4691 3.0930 2.4579 10 1 8.8205 2.2347 3.0114 11 6 9.1097 4.3070 2.5885 12 7 10.1483 4.4199 3.3874 13 14 8.5023 5.7913 1.6307 14 1 7.4899 6.5199 2.4366 15 1 9.6452 6.6934 1.3387 16 1 7.8891 5.3406 0.3556 17 6 5.6872 1.1609 -0.6781 18 6 6.7447 0.9723 -1.5622 19 6 6.4888 0.7443 -2.8963 20 6 5.1842 0.6956 -3.3688 21 6 4.1306 0.8725 -2.5172 22 6 4.3670 1.1038 -1.1607 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8306 -0.5261 0.7814 27 1 1.6460 1.8948 0.8900 28 1 1.6459 1.8948 -0.8900 29 1 3.9688 1.6827 2.0710 30 1 7.5573 0.8455 1.2453 31 1 6.4681 1.2672 2.5884 32 1 6.4930 3.6386 1.8642 33 1 7.5823 3.2169 0.5211 34 1 10.5987 5.2740 3.4795 35 1 7.7630 1.0088 -1.2044 36 1 7.3112 0.6024 -3.5818 37 1 5.0008 0.5163 -4.4180 38 1 3.1185 0.8329 -2.8919 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084826170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:14 Heat of formation + Delta-G solvation = 52.652055 kcal Electronic energy + Delta-G solvation = -18541.624095 eV Core-core repulsion = 15770.001251 eV Total energy + Delta-G solvation = -2771.622845 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01007 -36.82867 -36.19198 -33.94563 -32.34247 -30.66293 -29.22219 -28.83715 -26.71349 -24.63948 -23.17993 -22.35969 -21.49013 -20.40163 -19.22021 -17.22496 -16.46665 -16.06097 -15.42827 -15.02337 -14.88677 -14.43643 -14.19513 -13.82838 -13.68137 -13.46259 -13.05921 -12.72995 -12.67347 -12.04704 -11.93825 -11.83128 -11.74989 -11.27931 -11.18177 -11.07456 -10.48009 -10.31297 -10.17852 -9.94895 -9.43745 -9.18513 -8.68629 -8.48630 -7.80828 -7.20320 -6.19567 -4.20800 1.47417 1.99548 2.92902 3.22409 3.30576 3.31526 3.36247 4.22231 4.33282 4.46938 4.95979 5.03854 5.12233 5.14555 5.24253 5.29223 5.35794 5.43260 5.55421 5.58356 5.72849 5.75021 5.89256 5.98392 6.08325 6.10560 6.15333 6.28517 6.44601 6.80885 6.91744 6.94574 6.97563 7.02174 7.14203 7.21819 7.32972 7.51701 7.65292 7.78811 8.31864 8.81431 9.41465 10.92963 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.005387 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.418541 B = 5196.150400 C = 5922.359747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.141 3.859 4 C -0.194 4.194 5 C 0.070 3.930 6 N -0.470 5.470 7 C 0.117 3.883 8 C -0.024 4.024 9 C -0.529 4.529 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.896 5.896 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.099 3.901 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.091 4.091 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.062 0.938 26 H 0.341 0.659 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.265 -7.495 -8.636 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C 0.012 3.988 4 C -0.202 4.202 5 C -0.059 4.059 6 N -0.150 5.150 7 C -0.003 4.003 8 C -0.062 4.062 9 C -0.567 4.567 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.008 4.008 18 C -0.141 4.141 19 C -0.129 4.129 20 C -0.174 4.174 21 C -0.088 4.088 22 C -0.095 4.095 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.159 0.841 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.179 0.821 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.800 -7.404 -8.993 18.834 hybrid contribution -0.256 1.228 0.646 1.410 sum -15.056 -6.177 -8.347 18.289 Atomic orbital electron populations 1.22187 0.88364 1.01551 1.00143 1.60449 1.06800 1.14593 1.50261 1.20082 0.89456 0.88987 1.00278 1.19879 0.93638 1.14742 0.91900 1.21639 0.82656 1.02616 0.98994 1.44472 1.06383 1.58054 1.06071 1.22047 0.85080 1.01021 0.92128 1.19923 0.97005 0.91019 0.98222 1.20889 1.12161 0.97769 1.25865 0.90675 1.24948 0.94426 0.98757 0.94719 1.69892 1.20555 1.25676 1.37306 0.86803 0.78653 0.82813 0.81264 1.20140 1.21071 1.18947 1.18306 0.95297 1.03243 0.83962 1.20138 0.97186 1.04221 0.92571 1.20714 0.96709 1.01217 0.94289 1.20520 0.92607 1.05160 0.99156 1.20138 0.98566 0.98849 0.91227 1.18938 0.91517 1.05689 0.93404 0.91705 0.96339 0.91890 0.84103 0.94933 0.90740 0.82133 0.90105 0.89797 0.96463 0.95871 0.92435 0.86155 0.86311 0.86757 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.06 0.64 0.88 16 2 N -0.69 -7.73 6.84 -122.42 -0.84 -8.57 16 3 C 0.14 1.71 6.21 -4.97 -0.03 1.68 16 4 C -0.19 -2.92 5.83 -102.71 -0.60 -3.51 16 5 C 0.07 1.09 11.19 -16.73 -0.19 0.90 16 6 N -0.47 -8.41 2.78 -114.43 -0.32 -8.73 16 7 C 0.12 2.24 5.94 -4.05 -0.02 2.21 16 8 C -0.02 -0.55 4.36 -27.88 -0.12 -0.67 16 9 C -0.53 -14.45 9.66 -34.44 -0.33 -14.78 16 10 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 13 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.07 16 17 C 0.10 1.79 6.81 -83.99 -0.57 1.22 16 18 C -0.12 -2.05 10.00 -39.43 -0.39 -2.44 16 19 C -0.11 -1.61 10.01 -39.54 -0.40 -2.00 16 20 C -0.16 -2.16 9.97 -39.94 -0.40 -2.56 16 21 C -0.07 -1.03 10.05 -39.65 -0.40 -1.43 16 22 C -0.09 -1.52 6.35 -105.14 -0.67 -2.19 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.34 3.66 8.81 -39.29 -0.35 3.31 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.16 2.06 8.06 -52.48 -0.42 1.64 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 32 H 0.02 0.40 7.58 -51.93 -0.39 0.01 16 33 H 0.02 0.56 7.19 -51.93 -0.37 0.19 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -30.60 321.50 -9.56 -40.15 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.77 Total: 2.23 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -3.58 Total: -20.69 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.38 Total: -43.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.60 -9.56 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084826170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.806 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds