Wall clock time and date at job start Mon Mar 30 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99723 * 2 1 4 4 C 1.50707 * 109.46677 * 180.02562 * 3 2 1 5 5 C 1.34244 * 126.50310 * 260.01975 * 4 3 2 6 6 N 1.36825 * 109.93235 * 180.02562 * 5 4 3 7 7 C 1.46493 * 125.06108 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47400 * 265.02472 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.37689 * 109.87500 * 0.26588 * 6 5 4 18 18 C 1.39120 * 133.50582 * 180.45887 * 17 6 5 19 19 C 1.37746 * 119.78203 * 179.55292 * 18 17 6 20 20 C 1.38833 * 120.66365 * 359.75268 * 19 18 17 21 21 C 1.36624 * 120.52888 * 359.97438 * 20 19 18 22 22 C 1.39629 * 119.76554 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.47393 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47207 * 300.00031 * 1 2 3 25 25 H 1.09001 * 109.47168 * 60.00054 * 1 2 3 26 26 H 1.00901 * 110.99872 * 123.94813 * 2 1 3 27 27 H 1.08998 * 109.47707 * 60.00457 * 3 2 1 28 28 H 1.08999 * 109.47544 * 299.99669 * 3 2 1 29 29 H 1.08008 * 125.03060 * 0.02562 * 5 4 3 30 30 H 1.09004 * 109.46794 * 145.02571 * 7 6 5 31 31 H 1.09000 * 109.47559 * 25.03047 * 7 6 5 32 32 H 1.09004 * 109.47066 * 60.00265 * 8 7 6 33 33 H 1.08994 * 109.47405 * 300.00096 * 8 7 6 34 34 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 35 35 H 1.07997 * 120.10847 * 359.28264 * 18 17 6 36 36 H 1.08001 * 119.66911 * 179.73890 * 19 18 17 37 37 H 1.08004 * 119.73444 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.11575 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.3056 1.4966 1.0618 6 7 5.6146 1.3946 0.6768 7 6 6.7674 1.5220 1.5718 8 6 7.2829 2.9621 1.5377 9 6 8.4691 3.0930 2.4579 10 1 8.8205 2.2347 3.0114 11 6 9.1097 4.3070 2.5885 12 7 10.1483 4.4199 3.3874 13 14 8.5023 5.7913 1.6307 14 1 7.4899 6.5199 2.4366 15 1 9.6452 6.6934 1.3387 16 1 7.8891 5.3406 0.3556 17 6 5.6872 1.1609 -0.6781 18 6 6.7447 0.9723 -1.5622 19 6 6.4888 0.7443 -2.8963 20 6 5.1842 0.6956 -3.3688 21 6 4.1306 0.8725 -2.5172 22 6 4.3670 1.1038 -1.1607 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8306 -0.5261 0.7814 27 1 1.6460 1.8948 0.8900 28 1 1.6459 1.8948 -0.8900 29 1 3.9688 1.6827 2.0710 30 1 7.5573 0.8455 1.2453 31 1 6.4681 1.2672 2.5884 32 1 6.4930 3.6386 1.8642 33 1 7.5823 3.2169 0.5211 34 1 10.5987 5.2740 3.4795 35 1 7.7630 1.0088 -1.2044 36 1 7.3112 0.6024 -3.5818 37 1 5.0008 0.5163 -4.4180 38 1 3.1185 0.8329 -2.8919 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084826170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:12 Heat of formation + Delta-G solvation = 34.886194 kcal Electronic energy + Delta-G solvation = -18542.394481 eV Core-core repulsion = 15770.001251 eV Total energy + Delta-G solvation = -2772.393230 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.22966 -38.02181 -37.15460 -35.67871 -34.02920 -32.13593 -30.46420 -30.06523 -27.99525 -26.03010 -24.13534 -23.66729 -22.97487 -21.83557 -20.40346 -19.18271 -17.65802 -17.35612 -16.60224 -16.49049 -16.05605 -15.75948 -15.39774 -15.10882 -15.04683 -14.64754 -14.57673 -14.43487 -13.68391 -13.62168 -13.09981 -12.93722 -12.90712 -12.63995 -12.57112 -12.28416 -12.03623 -11.92591 -11.79529 -11.63859 -11.51225 -10.86448 -10.41239 -9.30344 -9.02217 -8.42635 -8.38296 -6.44299 0.28957 0.80313 1.27790 1.31093 1.41939 1.75522 2.01312 2.26999 2.96437 3.06354 3.59288 3.83350 3.87116 3.95297 4.13393 4.32916 4.33540 4.39837 4.40770 4.60393 4.60768 4.69999 4.73241 4.77342 4.92496 4.96558 5.02451 5.09978 5.15166 5.18377 5.32978 5.47621 5.66046 5.78168 5.92499 6.02139 6.11916 6.15899 6.42010 6.46684 6.52969 6.63202 7.21417 8.77051 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.005387 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.418541 B = 5196.150400 C = 5922.359747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.701 5.701 3 C 0.146 3.854 4 C -0.186 4.186 5 C 0.053 3.947 6 N -0.483 5.483 7 C 0.131 3.869 8 C -0.013 4.013 9 C -0.533 4.533 10 H 0.046 0.954 11 C 0.018 3.982 12 N -0.941 5.941 13 Si 0.942 3.058 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.262 1.262 17 C 0.069 3.931 18 C -0.150 4.150 19 C -0.106 4.106 20 C -0.152 4.152 21 C -0.073 4.073 22 C -0.110 4.110 23 H 0.074 0.926 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.343 0.657 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.018 0.982 33 H 0.011 0.989 34 H 0.269 0.731 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 -7.365 -10.297 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.333 5.333 3 C 0.017 3.983 4 C -0.194 4.194 5 C -0.074 4.074 6 N -0.164 5.164 7 C 0.010 3.990 8 C -0.051 4.051 9 C -0.571 4.571 10 H 0.065 0.935 11 C -0.180 4.180 12 N -0.580 5.580 13 Si 0.766 3.234 14 H -0.189 1.189 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.038 4.038 18 C -0.171 4.171 19 C -0.125 4.125 20 C -0.171 4.171 21 C -0.092 4.092 22 C -0.115 4.115 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.160 0.840 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.201 0.799 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.149 -7.289 -10.663 21.469 hybrid contribution 0.449 1.084 1.105 1.612 sum -16.700 -6.205 -9.558 20.217 Atomic orbital electron populations 1.22226 0.86772 1.02428 1.00642 1.60419 1.08315 1.13950 1.50569 1.20061 0.87462 0.89796 1.00963 1.20235 0.95023 1.13096 0.91054 1.22103 0.81794 1.03073 1.00407 1.44358 1.06564 1.59478 1.05968 1.21670 0.85916 0.98132 0.93259 1.19744 0.95368 0.93888 0.96149 1.21190 1.13294 0.96827 1.25815 0.93548 1.25801 0.94587 1.01905 0.95727 1.70018 1.22115 1.26695 1.39202 0.85780 0.78437 0.79226 0.79933 1.18913 1.20456 1.18584 1.18684 0.96416 1.04434 0.84234 1.20311 0.96722 1.06189 0.93834 1.21079 0.98164 0.99562 0.93658 1.20921 0.91859 1.03641 1.00708 1.20457 0.99895 0.98175 0.90656 1.19322 0.91301 1.06171 0.94665 0.90693 0.95533 0.91617 0.83954 0.93672 0.90569 0.79905 0.90626 0.88600 0.96329 0.97082 0.92165 0.87209 0.83809 0.83438 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.70 127.69 1.37 1.79 16 2 N -0.70 -14.09 6.84 -541.23 -3.70 -17.80 16 3 C 0.15 3.20 6.21 85.56 0.53 3.73 16 4 C -0.19 -5.32 5.83 -18.62 -0.11 -5.43 16 5 C 0.05 1.60 11.19 83.00 0.93 2.53 16 6 N -0.48 -17.17 2.78 -515.94 -1.43 -18.61 16 7 C 0.13 5.07 5.94 86.38 0.51 5.58 16 8 C -0.01 -0.62 4.36 29.85 0.13 -0.49 16 9 C -0.53 -29.80 9.66 25.60 0.25 -29.55 16 10 H 0.05 2.79 7.99 -2.91 -0.02 2.76 16 11 C 0.02 1.05 5.47 84.66 0.46 1.52 16 12 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 13 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 14 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 17 C 0.07 2.46 6.81 39.03 0.27 2.73 16 18 C -0.15 -5.09 10.00 22.36 0.22 -4.86 16 19 C -0.11 -2.91 10.01 22.30 0.22 -2.69 16 20 C -0.15 -3.82 9.97 22.03 0.22 -3.60 16 21 C -0.07 -2.02 10.05 22.23 0.22 -1.80 16 22 C -0.11 -3.53 6.35 -20.20 -0.13 -3.66 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.34 6.67 8.81 -89.69 -0.79 5.88 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.18 4.41 8.06 -2.91 -0.02 4.38 16 30 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 31 H 0.10 3.41 8.12 -2.39 -0.02 3.39 16 32 H 0.02 0.86 7.58 -2.38 -0.02 0.84 16 33 H 0.01 0.53 7.19 -2.39 -0.02 0.52 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.11 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.02 321.50 2.34 -63.68 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.19 Total: 17.77 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 5.10 Total: -34.19 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -4.84 Total: -93.71 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -66.02 2.34 -63.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084826170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.567 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds