Wall clock time and date at job start Mon Mar 30 2020 07:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 N 1.46898 * 109.46934 * 119.99511 * 2 1 3 5 5 C 1.46901 * 110.99855 * 84.99945 * 4 2 1 6 6 C 1.50700 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.34309 * 126.47440 * 260.02609 * 6 5 4 8 8 N 1.37001 * 109.92858 * 179.97438 * 7 6 5 9 9 C 1.37207 * 125.08802 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00128 * 158.96994 * 9 8 7 11 11 C 1.38849 * 120.00232 * 338.96882 * 9 8 7 12 12 N 1.31438 * 120.00012 * 349.15229 * 11 9 8 13 13 Si 1.86798 * 120.00231 * 169.14713 * 11 9 8 14 14 H 1.48506 * 109.47276 * 90.00239 * 13 11 9 15 15 H 1.48502 * 109.47578 * 210.00239 * 13 11 9 16 16 H 1.48496 * 109.47255 * 330.00318 * 13 11 9 17 17 C 1.38107 * 109.82199 * 0.02562 * 8 7 6 18 18 C 1.38962 * 133.42200 * 180.02562 * 17 8 7 19 19 C 1.37906 * 119.92123 * 179.32088 * 18 17 8 20 20 C 1.38748 * 120.64257 * 0.54479 * 19 18 17 21 21 C 1.37776 * 120.36876 * 359.66714 * 20 19 18 22 22 C 1.39520 * 119.65319 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.47061 * 300.00509 * 1 2 3 24 24 H 1.09010 * 109.46404 * 60.00591 * 1 2 3 25 25 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47536 * 239.99685 * 2 1 3 27 27 H 1.08996 * 109.47041 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47022 * 299.99612 * 3 2 1 29 29 H 1.08999 * 109.47146 * 59.99446 * 3 2 1 30 30 H 1.00894 * 111.00459 * 208.95837 * 4 2 1 31 31 H 1.08998 * 109.47607 * 300.00216 * 5 4 2 32 32 H 1.08996 * 109.46828 * 60.00496 * 5 4 2 33 33 H 1.07994 * 125.03498 * 0.02562 * 7 6 5 34 34 H 0.97001 * 120.00039 * 179.97438 * 12 11 9 35 35 H 1.08003 * 120.04061 * 359.97263 * 18 17 8 36 36 H 1.07995 * 119.67510 * 180.21306 * 19 18 17 37 37 H 1.08004 * 119.81593 * 179.64460 * 20 19 18 38 38 H 1.07999 * 120.17231 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 -2.1437 0.9808 6 6 2.5872 -2.8185 2.2301 7 6 3.8402 -3.2463 2.4559 8 7 3.9242 -3.8085 3.7024 9 6 5.0619 -4.3450 4.2506 10 1 5.1453 -4.4548 5.3218 11 6 6.1060 -4.7468 3.4282 12 7 5.9294 -4.8148 2.1275 13 14 7.7618 -5.1906 4.1703 14 1 7.7873 -6.6400 4.4928 15 1 8.8396 -4.8812 3.1967 16 1 7.9750 -4.4036 5.4114 17 6 2.6924 -3.7544 4.3246 18 6 2.2309 -4.1711 5.5673 19 6 0.9137 -3.9611 5.9177 20 6 0.0368 -3.3459 5.0359 21 6 0.4728 -2.9290 3.7972 22 6 1.8044 -3.1278 3.4312 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8902 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 2.9172 -0.3306 1.4849 31 1 1.0871 -2.5187 0.7426 32 1 2.7589 -2.3575 0.1533 33 1 4.6602 -3.1591 1.7585 34 1 6.6589 -5.0952 1.5530 35 1 2.9055 -4.6494 6.2620 36 1 0.5601 -4.2835 6.8859 37 1 -0.9934 -3.1932 5.3220 38 1 -0.2126 -2.4508 3.1131 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084827330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:36 Heat of formation + Delta-G solvation = 46.209776 kcal Electronic energy + Delta-G solvation = -18865.151833 eV Core-core repulsion = 16093.249630 eV Total energy + Delta-G solvation = -2771.902203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02876 -36.88012 -36.00116 -33.38295 -31.99436 -30.07375 -28.57821 -27.65577 -27.10380 -25.45405 -23.27353 -21.48935 -20.44327 -20.23156 -18.75487 -17.56018 -15.66513 -15.56169 -15.14575 -14.70713 -14.30260 -14.19097 -14.04952 -13.31960 -13.09314 -12.86330 -12.33325 -12.27335 -11.99837 -11.95381 -11.79749 -11.39430 -11.33986 -11.15330 -11.00805 -10.79169 -10.66792 -10.52870 -10.48501 -10.16212 -9.69320 -9.17921 -8.45276 -7.88147 -7.05647 -6.85693 -6.50590 -4.28727 2.26774 2.69883 2.99863 3.02299 3.07027 3.79611 3.93344 4.59180 4.84320 4.95265 5.13386 5.15354 5.24804 5.55824 5.77400 5.83589 5.88181 5.91834 5.96539 6.02496 6.04234 6.12095 6.24148 6.30187 6.43602 6.50187 6.53378 6.60941 6.95612 6.98718 7.13824 7.15836 7.24825 7.53980 7.59899 7.62912 7.71318 7.96710 8.07100 8.22617 8.46765 9.00955 9.44093 10.27748 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.006847 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.612936 B = 4088.543881 C = 5521.583792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.075 3.925 3 C -0.152 4.152 4 N -0.680 5.680 5 C 0.156 3.844 6 C -0.254 4.254 7 C 0.097 3.903 8 N -0.291 5.291 9 C -0.338 4.338 10 H 0.104 0.896 11 C 0.042 3.958 12 N -0.854 5.854 13 Si 0.938 3.062 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.265 1.265 17 C 0.051 3.949 18 C -0.111 4.111 19 C -0.138 4.138 20 C -0.174 4.174 21 C -0.075 4.075 22 C -0.091 4.091 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.339 0.661 31 H 0.062 0.938 32 H 0.023 0.977 33 H 0.167 0.833 34 H 0.278 0.722 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 6.005 -2.482 7.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 C -0.210 4.210 4 N -0.313 5.313 5 C 0.028 3.972 6 C -0.261 4.261 7 C -0.039 4.039 8 N 0.047 4.953 9 C -0.466 4.466 10 H 0.122 0.878 11 C -0.166 4.166 12 N -0.487 5.487 13 Si 0.763 3.237 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.059 4.059 18 C -0.132 4.132 19 C -0.158 4.158 20 C -0.194 4.194 21 C -0.094 4.094 22 C -0.097 4.097 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.184 0.816 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.779 5.768 -2.251 7.822 hybrid contribution 1.645 -0.482 -0.293 1.739 sum -3.135 5.287 -2.544 6.652 Atomic orbital electron populations 1.21776 0.95101 1.01702 1.00947 1.21489 0.95854 0.93965 0.92213 1.21957 1.00696 0.96328 1.01976 1.60667 1.33579 1.04407 1.32645 1.19876 0.98755 0.85576 0.92998 1.19612 0.93792 1.15955 0.96773 1.21875 0.97103 0.96447 0.88513 1.40136 1.05250 1.38630 1.11302 1.19815 0.91798 1.41044 0.93899 0.87786 1.25471 1.00737 0.95102 0.95320 1.69891 1.33171 1.42061 1.03556 0.85745 0.79720 0.79191 0.79080 1.19727 1.20155 1.18896 1.18411 0.85968 1.05752 0.95817 1.19851 0.95552 1.03272 0.94477 1.20415 0.93155 1.03276 0.98982 1.20492 0.98411 1.05212 0.95303 1.20236 0.93845 0.99587 0.95683 1.18774 0.92949 1.03698 0.94307 0.92189 0.93376 0.92839 0.94561 0.92939 0.92555 0.91914 0.84235 0.91933 0.95862 0.81576 0.91117 0.87823 0.87765 0.88035 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.42 37.16 0.35 -1.38 16 2 C 0.07 1.01 3.22 -67.71 -0.22 0.80 16 3 C -0.15 -1.75 9.18 37.16 0.34 -1.40 16 4 N -0.68 -11.32 6.30 -107.99 -0.68 -12.00 16 5 C 0.16 2.93 6.01 -4.98 -0.03 2.90 16 6 C -0.25 -5.78 5.83 -102.61 -0.60 -6.38 16 7 C 0.10 2.42 9.81 -16.63 -0.16 2.26 16 8 N -0.29 -7.64 2.92 -59.74 -0.17 -7.81 16 9 C -0.34 -8.83 9.93 -14.92 -0.15 -8.98 16 10 H 0.10 2.61 7.85 -52.48 -0.41 2.19 16 11 C 0.04 1.03 5.35 -17.49 -0.09 0.94 16 12 N -0.85 -21.90 10.85 55.49 0.60 -21.30 16 13 Si 0.94 18.98 29.56 -169.99 -5.03 13.95 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 15 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 17 C 0.05 1.28 6.75 -83.84 -0.57 0.71 16 18 C -0.11 -2.49 9.95 -39.43 -0.39 -2.88 16 19 C -0.14 -2.73 10.02 -39.51 -0.40 -3.12 16 20 C -0.17 -3.37 10.03 -39.56 -0.40 -3.77 16 21 C -0.07 -1.57 10.10 -39.27 -0.40 -1.96 16 22 C -0.09 -2.15 6.35 -105.09 -0.67 -2.82 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.05 0.71 7.45 -51.93 -0.39 0.32 16 26 H 0.04 0.50 7.80 -51.93 -0.40 0.09 16 27 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.34 5.71 8.34 -39.29 -0.33 5.38 16 31 H 0.06 1.15 7.43 -51.93 -0.39 0.76 16 32 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 33 H 0.17 4.21 6.34 -52.49 -0.33 3.87 16 34 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 36 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -27.19 317.39 -9.48 -36.67 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.61 Total: 10.81 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.38 Total: -25.10 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.25 Total: -41.11 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.19 -9.48 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084827330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.882 kcal (2) G-P(sol) polarization free energy of solvation -27.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds