Wall clock time and date at job start Mon Mar 30 2020 07:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 N 1.46898 * 109.46934 * 119.99511 * 2 1 3 5 5 C 1.46901 * 110.99855 * 84.99945 * 4 2 1 6 6 C 1.50700 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.34309 * 126.47440 * 260.02609 * 6 5 4 8 8 N 1.37001 * 109.92858 * 179.97438 * 7 6 5 9 9 C 1.37207 * 125.08802 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00128 * 158.96994 * 9 8 7 11 11 C 1.38849 * 120.00232 * 338.96882 * 9 8 7 12 12 N 1.31438 * 120.00012 * 349.15229 * 11 9 8 13 13 Si 1.86798 * 120.00231 * 169.14713 * 11 9 8 14 14 H 1.48506 * 109.47276 * 90.00239 * 13 11 9 15 15 H 1.48502 * 109.47578 * 210.00239 * 13 11 9 16 16 H 1.48496 * 109.47255 * 330.00318 * 13 11 9 17 17 C 1.38107 * 109.82199 * 0.02562 * 8 7 6 18 18 C 1.38962 * 133.42200 * 180.02562 * 17 8 7 19 19 C 1.37906 * 119.92123 * 179.32088 * 18 17 8 20 20 C 1.38748 * 120.64257 * 0.54479 * 19 18 17 21 21 C 1.37776 * 120.36876 * 359.66714 * 20 19 18 22 22 C 1.39520 * 119.65319 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.47061 * 300.00509 * 1 2 3 24 24 H 1.09010 * 109.46404 * 60.00591 * 1 2 3 25 25 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47536 * 239.99685 * 2 1 3 27 27 H 1.08996 * 109.47041 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47022 * 299.99612 * 3 2 1 29 29 H 1.08999 * 109.47146 * 59.99446 * 3 2 1 30 30 H 1.00894 * 111.00459 * 208.95837 * 4 2 1 31 31 H 1.08998 * 109.47607 * 300.00216 * 5 4 2 32 32 H 1.08996 * 109.46828 * 60.00496 * 5 4 2 33 33 H 1.07994 * 125.03498 * 0.02562 * 7 6 5 34 34 H 0.97001 * 120.00039 * 179.97438 * 12 11 9 35 35 H 1.08003 * 120.04061 * 359.97263 * 18 17 8 36 36 H 1.07995 * 119.67510 * 180.21306 * 19 18 17 37 37 H 1.08004 * 119.81593 * 179.64460 * 20 19 18 38 38 H 1.07999 * 120.17231 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 -2.1437 0.9808 6 6 2.5872 -2.8185 2.2301 7 6 3.8402 -3.2463 2.4559 8 7 3.9242 -3.8085 3.7024 9 6 5.0619 -4.3450 4.2506 10 1 5.1453 -4.4548 5.3218 11 6 6.1060 -4.7468 3.4282 12 7 5.9294 -4.8148 2.1275 13 14 7.7618 -5.1906 4.1703 14 1 7.7873 -6.6400 4.4928 15 1 8.8396 -4.8812 3.1967 16 1 7.9750 -4.4036 5.4114 17 6 2.6924 -3.7544 4.3246 18 6 2.2309 -4.1711 5.5673 19 6 0.9137 -3.9611 5.9177 20 6 0.0368 -3.3459 5.0359 21 6 0.4728 -2.9290 3.7972 22 6 1.8044 -3.1278 3.4312 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8902 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 2.9172 -0.3306 1.4849 31 1 1.0871 -2.5187 0.7426 32 1 2.7589 -2.3575 0.1533 33 1 4.6602 -3.1591 1.7585 34 1 6.6589 -5.0952 1.5530 35 1 2.9055 -4.6494 6.2620 36 1 0.5601 -4.2835 6.8859 37 1 -0.9934 -3.1932 5.3220 38 1 -0.2126 -2.4508 3.1131 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084827330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:35 Heat of formation + Delta-G solvation = 32.402598 kcal Electronic energy + Delta-G solvation = -18865.750557 eV Core-core repulsion = 16093.249630 eV Total energy + Delta-G solvation = -2772.500927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79250 -38.12603 -37.69184 -35.13350 -33.59411 -31.56755 -30.30574 -29.32802 -28.10234 -27.14306 -24.90550 -23.20692 -22.15566 -21.34771 -20.49865 -19.36132 -17.45081 -17.05059 -16.52753 -16.30385 -15.92816 -15.65235 -15.28757 -15.04419 -14.69671 -14.53425 -13.91860 -13.59878 -13.36624 -13.32509 -13.01539 -12.93296 -12.84556 -12.78304 -12.34870 -12.24035 -12.10026 -12.02594 -11.90699 -11.65252 -11.33272 -10.99273 -10.18666 -9.21810 -8.82632 -8.70068 -8.29724 -6.22007 0.55806 1.03072 1.34424 1.39597 1.49586 2.08604 2.17974 2.88509 3.06899 3.35570 3.56536 4.10198 4.18408 4.22513 4.28776 4.42831 4.51274 4.53800 4.63540 4.77626 4.84000 4.87569 4.93604 5.02954 5.04159 5.08145 5.12083 5.28166 5.32902 5.36562 5.45580 5.48885 5.53890 5.80380 5.88742 6.00897 6.27287 6.40554 6.49542 6.58168 6.60884 7.16347 7.58110 8.42768 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.006847 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.612936 B = 4088.543881 C = 5521.583792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 C -0.146 4.146 4 N -0.684 5.684 5 C 0.166 3.834 6 C -0.245 4.245 7 C 0.066 3.934 8 N -0.313 5.313 9 C -0.372 4.372 10 H 0.102 0.898 11 C 0.001 3.999 12 N -0.884 5.884 13 Si 1.010 2.990 14 H -0.266 1.266 15 H -0.269 1.269 16 H -0.260 1.260 17 C 0.017 3.983 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.167 4.167 21 C -0.080 4.080 22 C -0.117 4.117 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.335 0.665 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.152 0.848 34 H 0.283 0.717 35 H 0.104 0.896 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 6.731 -2.042 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.039 4.039 3 C -0.204 4.204 4 N -0.316 5.316 5 C 0.037 3.963 6 C -0.252 4.252 7 C -0.069 4.069 8 N 0.023 4.977 9 C -0.499 4.499 10 H 0.120 0.880 11 C -0.204 4.204 12 N -0.517 5.517 13 Si 0.830 3.170 14 H -0.191 1.191 15 H -0.193 1.193 16 H -0.184 1.184 17 C -0.094 4.094 18 C -0.159 4.159 19 C -0.143 4.143 20 C -0.186 4.186 21 C -0.098 4.098 22 C -0.123 4.123 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.170 0.830 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.250 6.508 -1.821 9.205 hybrid contribution 1.911 -0.671 -0.405 2.065 sum -4.339 5.837 -2.226 7.606 Atomic orbital electron populations 1.21753 0.94063 1.01375 1.01942 1.21640 0.96623 0.94862 0.90749 1.21911 1.00639 0.94879 1.02940 1.60633 1.33351 1.03146 1.34501 1.19770 0.98603 0.86861 0.91048 1.20037 0.92902 1.14544 0.97765 1.21858 0.97829 0.98531 0.88720 1.40310 1.05806 1.39724 1.11871 1.20115 0.92985 1.42527 0.94236 0.88027 1.26446 1.03919 0.94417 0.95608 1.69996 1.34345 1.42626 1.04762 0.84699 0.74925 0.78939 0.78401 1.19147 1.19308 1.18358 1.19000 0.86145 1.06936 0.97284 1.20131 0.97154 1.04579 0.94013 1.20898 0.91782 1.01152 1.00435 1.20988 1.00244 1.03189 0.94161 1.20548 0.92907 0.99466 0.96900 1.19141 0.94184 1.04526 0.94422 0.92624 0.90943 0.93810 0.94557 0.93063 0.90337 0.92142 0.84685 0.91368 0.96086 0.83035 0.90732 0.87739 0.83917 0.83875 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.42 71.98 0.68 -2.41 16 2 C 0.07 1.82 3.22 44.92 0.14 1.96 16 3 C -0.15 -3.09 9.18 71.98 0.66 -2.43 16 4 N -0.68 -22.54 6.30 -495.57 -3.12 -25.66 16 5 C 0.17 6.28 6.01 85.56 0.51 6.80 16 6 C -0.25 -11.48 5.83 -18.56 -0.11 -11.59 16 7 C 0.07 3.46 9.81 82.99 0.81 4.28 16 8 N -0.31 -17.27 2.92 -342.90 -1.00 -18.27 16 9 C -0.37 -20.32 9.93 84.00 0.83 -19.49 16 10 H 0.10 5.35 7.85 -2.91 -0.02 5.33 16 11 C 0.00 0.03 5.35 84.90 0.45 0.48 16 12 N -0.88 -47.16 10.85 21.64 0.23 -46.93 16 13 Si 1.01 39.62 29.56 68.60 2.03 41.65 16 14 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 15 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 16 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 17 C 0.02 0.85 6.75 38.93 0.26 1.11 16 18 C -0.14 -6.20 9.95 22.36 0.22 -5.97 16 19 C -0.12 -4.53 10.02 22.31 0.22 -4.30 16 20 C -0.17 -5.87 10.03 22.28 0.22 -5.65 16 21 C -0.08 -3.19 10.10 22.47 0.23 -2.97 16 22 C -0.12 -5.56 6.35 -20.17 -0.13 -5.69 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.04 1.09 7.45 -2.39 -0.02 1.07 16 26 H 0.04 0.95 7.80 -2.39 -0.02 0.93 16 27 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.34 11.43 8.34 -89.70 -0.75 10.68 16 31 H 0.07 2.48 7.43 -2.39 -0.02 2.47 16 32 H 0.02 0.79 8.05 -2.39 -0.02 0.78 16 33 H 0.15 8.22 6.34 -2.91 -0.02 8.20 16 34 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -60.90 317.39 3.46 -57.44 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.30 Total: 37.63 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 5.02 Total: -45.87 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -3.89 Total: -90.85 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -60.90 3.46 -57.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084827330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.842 kcal (2) G-P(sol) polarization free energy of solvation -60.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds