Wall clock time and date at job start Mon Mar 30 2020 07:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 C 1.47196 * 109.47351 * 239.99571 * 2 1 3 5 5 N 2.60799 * 109.47183 * 239.99698 * 2 1 3 6 6 C 1.53007 * 109.46865 * 119.99838 * 2 1 3 7 7 C 1.52998 * 109.47206 * 300.00081 * 6 2 1 8 8 N 1.46495 * 109.47236 * 180.02562 * 7 6 2 9 9 C 1.38859 * 119.99920 * 180.02562 * 8 7 6 10 10 C 1.39560 * 119.84294 * 359.72193 * 9 8 7 11 11 C 1.36344 * 120.15861 * 179.71950 * 10 9 8 12 12 C 1.40884 * 119.83858 * 0.55594 * 11 10 9 13 13 C 1.41134 * 120.15673 * 179.69853 * 12 11 10 14 14 H 1.08006 * 119.99856 * 155.10648 * 13 12 11 15 15 C 1.39864 * 119.99956 * 335.10464 * 13 12 11 16 16 N 1.30899 * 120.00253 * 342.13139 * 15 13 12 17 17 Si 1.86796 * 119.99768 * 162.13060 * 15 13 12 18 18 H 1.48504 * 109.47219 * 94.65490 * 17 15 13 19 19 H 1.48502 * 109.47229 * 214.65407 * 17 15 13 20 20 H 1.48506 * 109.47275 * 334.65268 * 17 15 13 21 21 C 1.40889 * 119.68782 * 359.71677 * 12 11 10 22 22 C 1.36337 * 119.83450 * 0.02562 * 21 12 11 23 23 H 1.09005 * 109.47487 * 299.99919 * 1 2 3 24 24 H 1.09004 * 109.47102 * 60.00547 * 1 2 3 25 25 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46796 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.46621 * 299.99735 * 3 2 1 28 28 H 1.08999 * 109.47139 * 60.00092 * 3 2 1 29 29 H 1.09006 * 109.46640 * 179.97438 * 6 2 1 30 30 H 1.09001 * 109.47360 * 60.00082 * 6 2 1 31 31 H 1.08998 * 109.47148 * 59.99765 * 7 6 2 32 32 H 1.09009 * 109.47217 * 300.00110 * 7 6 2 33 33 H 0.97000 * 120.00456 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.92336 * 359.97438 * 10 9 8 35 35 H 1.07998 * 120.08188 * 180.27319 * 11 10 9 36 36 H 0.96995 * 120.00367 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.08381 * 179.97438 * 21 12 11 38 38 H 1.08005 * 119.92082 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1293 6 6 2.0399 -0.7213 1.2493 7 6 1.5299 0.0000 2.4985 8 7 2.0186 -0.6902 3.6947 9 6 1.6828 -0.2160 4.9558 10 6 0.8842 0.9218 5.0800 11 6 0.5458 1.3897 6.3151 12 6 1.0140 0.7285 7.4677 13 6 0.6730 1.2108 8.7495 14 1 0.6663 0.5389 9.5951 15 6 0.3438 2.5588 8.9247 16 7 0.6784 3.4380 8.0145 17 14 -0.5735 3.1044 10.4577 18 1 0.4003 3.5685 11.4784 19 1 -1.4966 4.2155 10.1131 20 1 -1.3535 1.9632 11.0005 21 6 1.8245 -0.4162 7.3347 22 6 2.1505 -0.8759 6.0933 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9562 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7216 1.2491 30 1 1.6766 -1.7489 1.2494 31 1 0.4399 0.0001 2.4985 32 1 1.8932 1.0278 2.4985 33 1 2.5763 -1.4789 3.6058 34 1 0.5300 1.4305 4.1956 35 1 -0.0759 2.2677 6.4097 36 1 0.4498 4.3727 8.1359 37 1 2.1872 -0.9278 8.2139 38 1 2.7721 -1.7531 5.9897 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087591899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:41 Heat of formation + Delta-G solvation = 17.483362 kcal Electronic energy + Delta-G solvation = -18075.674565 eV Core-core repulsion = 15302.526691 eV Total energy + Delta-G solvation = -2773.147874 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.00988 -39.24198 -37.01504 -35.90281 -34.48604 -31.26915 -31.13561 -29.00740 -28.25190 -26.25858 -25.29055 -23.14262 -22.19402 -21.22418 -19.09041 -18.18527 -17.52388 -16.73873 -16.20164 -16.11546 -15.58544 -15.43932 -15.16404 -14.62085 -14.41305 -14.14351 -13.87527 -13.75868 -13.71321 -13.42243 -13.12599 -12.91421 -12.77285 -12.69859 -12.61630 -12.32059 -12.13454 -11.96073 -11.81050 -11.71350 -11.50705 -11.09643 -10.96548 -10.17586 -9.32431 -8.49722 -8.07327 -5.94460 1.16993 1.25716 1.43493 1.55575 1.63557 1.68634 1.73260 2.31253 2.74603 2.90133 3.05984 3.84868 3.90509 3.92610 4.02339 4.29510 4.43054 4.53219 4.58680 4.73353 4.83238 4.87347 4.97023 5.07088 5.10084 5.12023 5.16514 5.22838 5.34693 5.38971 5.44347 5.53234 5.77452 5.87195 6.04398 6.25527 6.46935 6.51471 6.74487 6.95455 7.14696 7.23398 7.39742 8.53202 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.039187 B = 0.003643 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.358735 B = 7684.683756 C = 8139.144962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 C -0.148 4.148 4 C 0.243 3.757 5 N -0.489 5.489 6 C -0.110 4.110 7 C 0.133 3.867 8 N -0.754 5.754 9 C 0.115 3.885 10 C -0.171 4.171 11 C -0.143 4.143 12 C 0.033 3.967 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.034 3.966 16 N -0.840 5.840 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.263 1.263 21 C -0.198 4.198 22 C -0.169 4.169 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.282 0.718 37 H 0.092 0.908 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 -2.378 -12.360 12.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.042 3.958 3 C -0.207 4.207 4 C -0.074 4.074 5 N -0.165 5.165 6 C -0.149 4.149 7 C 0.008 3.992 8 N -0.389 5.389 9 C 0.016 3.984 10 C -0.193 4.193 11 C -0.163 4.163 12 C 0.030 3.970 13 C -0.539 4.539 14 H 0.082 0.918 15 C -0.178 4.178 16 N -0.468 5.468 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.192 1.192 20 H -0.187 1.187 21 C -0.218 4.218 22 C -0.191 4.191 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.230 0.770 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.377 -2.815 -13.956 14.242 hybrid contribution -0.096 0.207 1.144 1.167 sum -0.473 -2.608 -12.811 13.083 Atomic orbital electron populations 1.22036 0.90123 1.03815 1.04625 1.18296 0.97715 0.94985 0.84778 1.22037 1.02109 0.91910 1.04601 1.29567 0.91704 0.92152 0.93988 1.81233 1.10839 1.11147 1.13237 1.21697 1.02040 0.99978 0.91155 1.21310 0.98810 0.95994 0.83060 1.43905 1.59879 1.33731 1.01376 1.17424 1.00129 0.95397 0.85472 1.20284 1.04049 0.98092 0.96920 1.20879 1.02247 1.01091 0.92064 1.17816 0.92369 0.92908 0.93909 1.19570 1.44417 0.94850 0.95057 0.91792 1.26536 0.94295 0.96207 1.00780 1.69903 1.37365 1.03307 1.36270 0.85350 0.78754 0.78369 0.78100 1.19254 1.19200 1.18725 1.20741 1.03646 1.01221 0.96214 1.20109 1.05504 1.01876 0.91632 0.89052 0.90752 0.91497 0.91651 0.90720 0.89129 0.90218 0.90015 0.92066 0.92433 0.77011 0.86741 0.88291 0.90796 0.88998 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.08 71.98 0.58 -1.13 16 2 C 0.05 0.63 0.72 -53.99 -0.04 0.59 16 3 C -0.15 -1.79 8.08 71.98 0.58 -1.21 16 4 C 0.24 4.67 13.86 89.44 1.24 5.91 16 5 N -0.49 -12.37 18.54 20.00 0.37 -12.00 16 6 C -0.11 -1.67 4.34 30.60 0.13 -1.54 16 7 C 0.13 2.77 4.18 86.38 0.36 3.13 16 8 N -0.75 -21.22 5.70 -339.00 -1.93 -23.15 16 9 C 0.12 4.51 6.67 38.67 0.26 4.77 16 10 C -0.17 -7.40 9.23 22.15 0.20 -7.19 16 11 C -0.14 -7.37 8.63 22.48 0.19 -7.18 16 12 C 0.03 1.79 5.57 -21.27 -0.12 1.67 16 13 C -0.51 -28.23 9.03 23.37 0.21 -28.01 16 14 H 0.06 3.48 7.91 -2.91 -0.02 3.46 16 15 C 0.03 1.75 5.13 85.23 0.44 2.19 16 16 N -0.84 -44.85 10.98 21.81 0.24 -44.61 16 17 Si 0.97 39.55 29.59 68.60 2.03 41.58 16 18 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 19 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 C -0.20 -9.72 9.74 22.48 0.22 -9.50 16 22 C -0.17 -7.09 9.82 22.15 0.22 -6.87 16 23 H 0.09 1.00 6.43 -2.38 -0.02 0.98 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 1.06 6.43 -2.39 -0.02 1.04 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.26 6.22 -2.39 -0.01 1.25 16 32 H 0.06 1.24 6.20 -2.38 -0.01 1.22 16 33 H 0.40 9.59 8.47 -92.71 -0.79 8.81 16 34 H 0.11 4.23 6.68 -2.91 -0.02 4.21 16 35 H 0.10 5.40 6.18 -2.91 -0.02 5.38 16 36 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 37 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.11 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -64.33 317.00 5.47 -58.85 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.28 Total: 23.69 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 4.48 Total: -44.37 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.32 Total: -79.76 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -64.33 5.47 -58.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087591899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.338 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds