Wall clock time and date at job start Mon Mar 30 2020 07:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47334 * 2 1 4 4 H 1.09006 * 109.46682 * 304.99502 * 3 2 1 5 5 N 1.46896 * 109.47383 * 64.99250 * 3 2 1 6 6 C 1.53003 * 109.47241 * 184.99842 * 3 2 1 7 7 C 1.50694 * 109.47061 * 174.99750 * 6 3 2 8 8 C 1.34309 * 126.47735 * 265.02231 * 7 6 3 9 9 N 1.37003 * 109.93372 * 179.75682 * 8 7 6 10 10 C 1.37205 * 125.08661 * 180.26534 * 9 8 7 11 11 H 1.08007 * 119.99456 * 158.96441 * 10 9 8 12 12 C 1.38850 * 120.00263 * 338.96197 * 10 9 8 13 13 N 1.31439 * 120.00148 * 349.15991 * 12 10 9 14 14 Si 1.86807 * 119.99844 * 169.16290 * 12 10 9 15 15 H 1.48494 * 109.47333 * 59.99799 * 14 12 10 16 16 H 1.48498 * 109.46970 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46968 * 299.99837 * 14 12 10 18 18 C 1.38109 * 109.81740 * 0.24291 * 9 8 7 19 19 C 1.38956 * 133.42117 * 180.02562 * 18 9 8 20 20 C 1.37898 * 119.92397 * 179.97438 * 19 18 9 21 21 C 1.38747 * 120.64457 * 359.95720 * 20 19 18 22 22 C 1.37776 * 120.36873 * 0.03965 * 21 20 19 23 23 C 1.39519 * 119.65424 * 359.97438 * 22 21 20 24 24 H 1.08991 * 109.47357 * 300.00720 * 1 2 3 25 25 H 1.09002 * 109.46850 * 60.00499 * 1 2 3 26 26 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47047 * 239.99303 * 2 1 3 28 28 H 1.09002 * 109.46850 * 119.99500 * 2 1 3 29 29 H 1.00904 * 110.99771 * 60.00211 * 5 3 2 30 30 H 1.00897 * 111.00158 * 183.95635 * 5 3 2 31 31 H 1.09004 * 109.46764 * 54.99738 * 6 3 2 32 32 H 1.08996 * 109.46742 * 294.99722 * 6 3 2 33 33 H 1.08001 * 125.03025 * 0.02562 * 8 7 6 34 34 H 0.97000 * 119.99700 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.03844 * 359.95532 * 19 18 9 36 36 H 1.07999 * 119.67775 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.81629 * 180.02562 * 21 20 19 38 38 H 1.08003 * 120.17612 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6513 2.0993 1.2551 6 6 3.5649 1.4443 -0.1257 7 6 4.0570 2.8632 -0.2493 8 6 4.3179 3.5213 -1.3906 9 7 4.7416 4.7936 -1.1098 10 6 5.0866 5.7347 -2.0467 11 1 5.0803 6.7830 -1.7867 12 6 5.4439 5.3395 -3.3289 13 7 5.6592 4.0693 -3.5891 14 14 5.6188 6.6133 -4.6842 15 1 6.6655 7.5968 -4.3071 16 1 6.0049 5.9395 -5.9499 17 1 4.3243 7.3160 -4.8730 18 6 4.7689 4.9869 0.2574 19 6 5.1120 6.0661 1.0627 20 6 5.0346 5.9525 2.4348 21 6 4.6155 4.7683 3.0239 22 6 4.2707 3.6862 2.2439 23 6 4.3441 3.7857 0.8542 24 1 -0.3633 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0421 1.6180 2.0512 30 1 1.9203 3.0718 1.2527 31 1 3.8571 0.8799 -1.0113 32 1 4.0029 0.9836 0.7597 33 1 4.2057 3.1100 -2.3829 34 1 5.9084 3.7932 -4.4850 35 1 5.4391 6.9927 0.6145 36 1 5.3026 6.7937 3.0570 37 1 4.5595 4.6942 4.0999 38 1 3.9453 2.7658 2.7057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091005236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:18 Heat of formation + Delta-G solvation = 33.925606 kcal Electronic energy + Delta-G solvation = -19139.310869 eV Core-core repulsion = 16366.875985 eV Total energy + Delta-G solvation = -2772.434884 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.17410 -36.70435 -36.10941 -33.27791 -31.72089 -30.34160 -29.15806 -28.37659 -26.91643 -24.79611 -22.92636 -21.59314 -20.55369 -20.15437 -18.65532 -17.63251 -15.80437 -15.69227 -15.00667 -14.76743 -14.33252 -14.19651 -13.77907 -13.23785 -13.14337 -12.97670 -12.82924 -12.44190 -11.98850 -11.82248 -11.58138 -11.38818 -11.21349 -11.06453 -10.95370 -10.71324 -10.57255 -10.51688 -10.32128 -10.11351 -9.72818 -9.21725 -8.55183 -8.16755 -7.14883 -6.89081 -6.53534 -4.33424 2.14589 2.60642 2.98077 3.00470 3.02748 3.76445 3.94302 4.66053 4.78845 5.03141 5.12953 5.26745 5.46083 5.64197 5.73437 5.78514 5.82818 5.97939 6.00884 6.13006 6.19004 6.26399 6.35724 6.41622 6.44396 6.59179 6.60888 6.71448 6.90580 6.92939 7.05524 7.09099 7.18122 7.45363 7.52222 7.63013 7.74257 7.96215 8.01033 8.14126 8.42309 8.95296 9.37941 10.23737 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.007464 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.957672 B = 3750.229132 C = 5173.754875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.095 3.905 4 H 0.075 0.925 5 N -0.841 5.841 6 C -0.056 4.056 7 C -0.256 4.256 8 C 0.095 3.905 9 N -0.288 5.288 10 C -0.341 4.341 11 H 0.104 0.896 12 C 0.043 3.957 13 N -0.852 5.852 14 Si 0.939 3.061 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.267 1.267 18 C 0.052 3.948 19 C -0.107 4.107 20 C -0.139 4.139 21 C -0.170 4.170 22 C -0.087 4.087 23 C -0.109 4.109 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.327 0.673 30 H 0.349 0.651 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.169 0.831 34 H 0.280 0.720 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 -3.337 4.517 6.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.017 4.017 4 H 0.093 0.907 5 N -0.370 5.370 6 C -0.096 4.096 7 C -0.262 4.262 8 C -0.040 4.040 9 N 0.050 4.950 10 C -0.469 4.469 11 H 0.122 0.878 12 C -0.166 4.166 13 N -0.484 5.484 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.192 1.192 18 C -0.060 4.060 19 C -0.127 4.127 20 C -0.159 4.159 21 C -0.189 4.189 22 C -0.106 4.106 23 C -0.115 4.115 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.164 0.836 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.186 0.814 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.756 -3.389 3.804 6.969 hybrid contribution 1.443 0.764 -0.649 1.757 sum -3.313 -2.625 3.155 5.274 Atomic orbital electron populations 1.21650 0.95821 1.00059 1.02388 1.21560 0.96213 0.96424 1.01146 1.21507 0.93108 0.93853 0.93253 0.90701 1.59094 1.66546 1.07854 1.03518 1.20423 0.95413 0.92957 1.00839 1.19728 1.19007 0.96138 0.91372 1.21892 0.98418 0.84867 0.98852 1.40158 1.42552 1.10036 1.02226 1.19785 1.46892 0.89454 0.90721 0.87787 1.25482 0.94459 0.97466 0.99153 1.69880 1.40419 1.15429 1.22662 0.85792 0.79398 0.79608 0.78856 1.19285 1.20210 1.19189 1.18373 1.07128 0.96208 0.84246 1.19887 1.03394 0.96724 0.92665 1.20421 1.04466 0.97618 0.93403 1.20480 1.06261 0.94205 0.97984 1.20184 1.01398 0.97330 0.91700 1.18847 1.06484 0.93817 0.92305 0.91695 0.93343 0.94111 0.92226 0.92652 0.86134 0.83619 0.92218 0.93029 0.81430 0.90958 0.87736 0.87663 0.87936 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.80 37.16 0.36 -1.41 16 2 C -0.12 -1.53 5.58 -26.73 -0.15 -1.68 16 3 C 0.09 1.50 2.79 -67.71 -0.19 1.31 16 4 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 5 N -0.84 -13.07 8.62 -4.67 -0.04 -13.11 16 6 C -0.06 -1.00 5.39 -27.88 -0.15 -1.15 16 7 C -0.26 -5.59 5.10 -102.61 -0.52 -6.11 16 8 C 0.10 2.34 9.81 -16.63 -0.16 2.18 16 9 N -0.29 -7.42 2.92 -59.73 -0.17 -7.59 16 10 C -0.34 -8.81 9.93 -14.92 -0.15 -8.96 16 11 H 0.10 2.57 7.85 -52.48 -0.41 2.16 16 12 C 0.04 1.05 5.35 -17.49 -0.09 0.96 16 13 N -0.85 -21.73 10.85 55.49 0.60 -21.12 16 14 Si 0.94 18.88 29.57 -169.99 -5.03 13.85 16 15 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 C 0.05 1.25 6.75 -83.84 -0.57 0.68 16 19 C -0.11 -2.30 9.95 -39.44 -0.39 -2.70 16 20 C -0.14 -2.62 10.02 -39.52 -0.40 -3.02 16 21 C -0.17 -3.08 10.03 -39.56 -0.40 -3.47 16 22 C -0.09 -1.67 9.25 -39.27 -0.36 -2.04 16 23 C -0.11 -2.40 5.44 -105.09 -0.57 -2.97 16 24 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.33 4.66 8.68 -39.29 -0.34 4.32 16 30 H 0.35 6.15 6.64 -39.29 -0.26 5.89 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.17 4.23 6.34 -52.49 -0.33 3.90 16 34 H 0.28 6.63 8.31 -40.82 -0.34 6.30 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.10 1.67 7.74 -52.48 -0.41 1.26 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -26.17 312.94 -9.18 -35.35 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -5.52 Total: 16.29 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -3.74 Total: -28.37 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.39 Total: -41.83 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.17 -9.18 -35.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091005236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.275 kcal (2) G-P(sol) polarization free energy of solvation -26.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds